Clc01G02190 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc01G02190
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr01: 1904833 .. 1905691 (-)
RNA-Seq Expression	Clc01G02190
Synteny	Clc01G02190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAGGAGAAAAGCCACCATTGAGGTAAAAGAAGTTATCATTGCATTCATTTACATGTAAAGTTCAGTTCCATGAGATCATATTAGAGAAAGAAAAATGAAAAGACCATATTGTCTATGATAAATTCTTCAAACCCATTTGACATTCCTGCTCTGCGATATCTGAATCTGAATTCAATTTATAAATTGATAGAAAGGTCCGCTGAATGGATAATGTAGGTGAGCACCAAGGCCAACAACATCAATACATAGGCAATCCCTTGGTCTATGCTTGTCCCTGCAAATCAAAGTTATAATAGTTCTCATCAGTTGCATTATATAACCCATCCGTTTGATATTATTATTTATTGATCAGGCAAGAAGAAGAAGAAGTAACCATCGCTAGCAGCAGGAGGTTGAGCCGGAGCCAAAGATTGAGCATGAGCAGAGGAAAGCATAGCCAAAAGCAAAGCAACAGCAAACAAAGGGACCTTATAAGCAACGACCGCCATTGTAGAAAGTTGTAAGTGAAAATTAAAAAGAAAGAGAAAAAAAAAAAAAAAGAGGGAATGAAATCTCTCTCTGCAACGTCTCTCTCAGAAATGGAAGAAGTAGAGAGGAAAGCTCCGGAGAGGCGAAGCAGAGAGAGATATTATTAGAAAATTAAAGTAGTATCTAGGCTGATAATTGATAAATGGTTTTGAAACTGTCAAAAGGGGAGGGGGCTAGCCGAACCACCACCAATTGACAGTTTCAATGAAGAAGACGACGATGACGGCGTGGCAATGGCGGTGTGCCTCTCAACCAATGGGGCTATGGATTTTATAGCCTTCATTTGGTTTGGAATGTTGCAATTGCCAACTACAATGGCCGTCTAA

mRNA sequence

ATGGATAGGAGAAAAGCCACCATTGAGGTAAAAGAAGTTATCATTGCATTCATTTACATGCAAGAAGAAGAAGAAGTAACCATCGCTAGCAGCAGGAGGTTGAGCCGGAGCCAAAGATTGAGCATGAGCAGAGGAAAGCATAGCCAAAAGCAAAGCAACAGCAAACAAAGGGACCTTATAAGCAACGACCGCCATTGTAGAAAGTTTTTCAATGAAGAAGACGACGATGACGGCGTGGCAATGGCGGTGTGCCTCTCAACCAATGGGGCTATGGATTTTATAGCCTTCATTTGGTTTGGAATGTTGCAATTGCCAACTACAATGGCCGTCTAA

Coding sequence (CDS)

ATGGATAGGAGAAAAGCCACCATTGAGGTAAAAGAAGTTATCATTGCATTCATTTACATGCAAGAAGAAGAAGAAGTAACCATCGCTAGCAGCAGGAGGTTGAGCCGGAGCCAAAGATTGAGCATGAGCAGAGGAAAGCATAGCCAAAAGCAAAGCAACAGCAAACAAAGGGACCTTATAAGCAACGACCGCCATTGTAGAAAGTTTTTCAATGAAGAAGACGACGATGACGGCGTGGCAATGGCGGTGTGCCTCTCAACCAATGGGGCTATGGATTTTATAGCCTTCATTTGGTTTGGAATGTTGCAATTGCCAACTACAATGGCCGTCTAA

Protein sequence

MDRRKATIEVKEVIIAFIYMQEEEEVTIASSRRLSRSQRLSMSRGKHSQKQSNSKQRDLISNDRHCRKFFNEEDDDDGVAMAVCLSTNGAMDFIAFIWFGMLQLPTTMAV

Homology

The following BLAST results are available for this feature:

BLAST of Clc01G02190 vs.


Match Name	E-value	Identity	Description

BLAST of Clc01G02190 vs.


Match Name	E-value	Identity	Description

BLAST of Clc01G02190 vs.


Match Name	E-value	Identity	Description

BLAST of Clc01G02190 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc01G02190.1	Clc01G02190.1	mRNA