Clc01G02180 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc01G02180
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Arabinogalactan protein
Location	ClcChr01: 1904599 .. 1905830 (+)
RNA-Seq Expression	Clc01G02180
Synteny	Clc01G02180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTTGTACTGCATCTTTTACAAAAAAACAAATGCCCCTAAATGAATGGTGGTAACAATTACTTCTAAAGTATTCACTTAGTTTCAAAAATACTCTTTCATCTTTCAAAATTTGCTATATTAACCCATGACATAAGAATCCAAAAGAAAGAAAAAGGAAATGGAAGCACGAGAACGAAAAAGAAGCCTATAGACTATTTCAAGGAAACCCAAAAAAAGAGTAAGAAATGAGCGATTTAGACGGCCATTGTAGTTGGCAATTGCAACATTCCAAACCAAATGAAGGCTATAAAATCCATAGCCCCATTGGTTGAGAGGCACACCGCCATTGCCACGCCGTCATCGTCGTCTTCTTCATTGAAACTGTCAATTGGTGGTGGTTCGGCTAGCCCCCTCCCCTTTTGACAGTTTCAAAACCATTTATCAATTATCAGCCTAGATACTACTTTAATTTTCTAATAATATCTCTCTCTGCTTCGCCTCTCCGGAGCTTTCCTCTCTACTTCTTCCATTTCTGAGAGAGACGTTGCAGAGAGAGATTTCATTCCCTCTTTTTTTTTTTTTTTCTCTTTCTTTTTAATTTTCACTTACAACTTTCTACAATGGCGGTCGTTGCTTATAAGGTCCCTTTGTTTGCTGTTGCTTTGCTTTTGGCTATGCTTTCCTCTGCTCATGCTCAATCTTTGGCTCCGGCTCAACCTCCTGCTGCTAGCGATGGTTACTTCTTCTTCTTCTTGCCTGATCAATAAATAATAATATCAAACGGATGGGTTATATAATGCAACTGATGAGAACTATTATAACTTTGATTTGCAGGGACAAGCATAGACCAAGGGATTGCCTATGTATTGATGTTGTTGGCCTTGGTGCTCACCTACATTATCCATTCAGCGGACCTTTCTATCAATTTATAAATTGAATTCAGATTCAGATATCGCAGAGCAGGAATGTCAAATGGGTTTGAAGAATTTATCATAGACAATATGGTCTTTTCATTTTTCTTTCTCTAATATGATCTCATGGAACTGAACTTTACATGTAAATGAATGCAATGATAACTTCTTTTACCTCAATGGTGGCTTTTCTCCTATCCATTATCCATTGCCAATTCTGTTTCTTTTTAAATCAACTGTTGTTTAATAGTTATTGGTAGATTTGATGAGTTTTTAACTTGTTGAGAAAATAGAAATCATGAAAATGAAACATAAATAAAAACTGTATAACCCTTAGGCCC

mRNA sequence

GGTTGTACTGCATCTTTTACAAAAAAACAAATGCCCCTAAATGAATGGTGGTAACAATTACTTCTAAAGTATTCACTTAGTTTCAAAAATACTCTTTCATCTTTCAAAATTTGCTATATTAACCCATGACATAAGAATCCAAAAGAAAGAAAAAGGAAATGGAAGCACGAGAACGAAAAAGAAGCCTATAGACTATTTCAAGGAAACCCAAAAAAAGAGTAAGAAATGAGCGATTTAGACGGCCATTGTAGTTGGCAATTGCAACATTCCAAACCAAATGAAGGCTATAAAATCCATAGCCCCATTGGTTGAGAGGCACACCGCCATTGCCACGCCGTCATCGTCGTCTTCTTCATTGAAACTGTCAATTGGTGGTGGTTCGGCTAGCCCCCTCCCCTTTTGACAGTTTCAAAACCATTTATCAATTATCAGCCTAGATACTACTTTAATTTTCTAATAATATCTCTCTCTGCTTCGCCTCTCCGGAGCTTTCCTCTCTACTTCTTCCATTTCTGAGAGAGACGTTGCAGAGAGAGATTTCATTCCCTCTTTTTTTTTTTTTTTCTCTTTCTTTTTAATTTTCACTTACAACTTTCTACAATGGCGGTCGTTGCTTATAAGGTCCCTTTGTTTGCTGTTGCTTTGCTTTTGGCTATGCTTTCCTCTGCTCATGCTCAATCTTTGGCTCCGGCTCAACCTCCTGCTGCTAGCGATGGGACAAGCATAGACCAAGGGATTGCCTATGTATTGATGTTGTTGGCCTTGGTGCTCACCTACATTATCCATTCAGCGGACCTTTCTATCAATTTATAAATTGAATTCAGATTCAGATATCGCAGAGCAGGAATGTCAAATGGGTTTGAAGAATTTATCATAGACAATATGGTCTTTTCATTTTTCTTTCTCTAATATGATCTCATGGAACTGAACTTTACATGTAAATGAATGCAATGATAACTTCTTTTACCTCAATGGTGGCTTTTCTCCTATCCATTATCCATTGCCAATTCTGTTTCTTTTTAAATCAACTGTTGTTTAATAGTTATTGGTAGATTTGATGAGTTTTTAACTTGTTGAGAAAATAGAAATCATGAAAATGAAACATAAATAAAAACTGTATAACCCTTAGGCCC

Coding sequence (CDS)

ATGGCGGTCGTTGCTTATAAGGTCCCTTTGTTTGCTGTTGCTTTGCTTTTGGCTATGCTTTCCTCTGCTCATGCTCAATCTTTGGCTCCGGCTCAACCTCCTGCTGCTAGCGATGGGACAAGCATAGACCAAGGGATTGCCTATGTATTGATGTTGTTGGCCTTGGTGCTCACCTACATTATCCATTCAGCGGACCTTTCTATCAATTTATAA

Protein sequence

MAVVAYKVPLFAVALLLAMLSSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSINL

Homology

[Close]

BLAST of Clc01G02180 vs. NCBI nr
Match: XP_004143956.1 (arabinogalactan protein 41 [Cucumis sativus] >KGN50035.1 hypothetical protein Csa_000543 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 1.9e-16
Identity = 58/74 (78.38%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 1  MAVVAYKVP----LFAVALLLAMLSSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLALV 60
          MAVVA KVP    LF VAL+L  LSSA+AQSL+PAQPPA  DGTSIDQGIAYVLMLLALV
Sbjct: 1  MAVVACKVPFGGILFVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALV 60

Query: 61 LTYIIHSADLSINL 71
          LTYIIHSADL ++L
Sbjct: 61 LTYIIHSADLYVSL 74

[Close]

BLAST of Clc01G02180 vs. NCBI nr
Match: KAG7017004.1 (Arabinogalactan peptide 16 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 94.0 bits (232), Expect = 5.6e-16
Identity = 57/72 (79.17%), Postives = 61/72 (84.72%), Query Frame = 0


Query: 1  MAVVAYKVP---LFAVALLLAMLSSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVL 60
          MAVVA K+P    F V  +LAM+  A AQSLAPAQPPAASDGTSIDQGIAYVLMLLALVL
Sbjct: 1  MAVVANKIPFGVFFGVVFVLAMILPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVL 60

Query: 61 TYIIHSADLSIN 70
          TYIIHSADLSI+
Sbjct: 61 TYIIHSADLSIS 72

[Close]

BLAST of Clc01G02180 vs. NCBI nr
Match: KAG6579545.1 (Arabinogalactan protein 16, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.4 bits (228), Expect = 1.6e-15
Identity = 57/72 (79.17%), Postives = 60/72 (83.33%), Query Frame = 0


Query: 1  MAVVAYKVP---LFAVALLLAMLSSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVL 60
          MAVVA K+P      V  +LAML  A AQSLAPAQPPAASDGTSIDQGIAYVLMLLALVL
Sbjct: 1  MAVVANKIPFGVFIGVVFVLAMLLPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVL 60

Query: 61 TYIIHSADLSIN 70
          TYIIHSADLSI+
Sbjct: 61 TYIIHSADLSIS 72

[Close]

BLAST of Clc01G02180 vs. NCBI nr
Match: XP_008437371.1 (PREDICTED: arabinogalactan peptide 22-like [Cucumis melo] >KAA0042697.1 arabinogalactan peptide 22-like [Cucumis melo var. makuwa] >TYK06101.1 arabinogalactan peptide 22-like [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 1.8e-14
Identity = 55/74 (74.32%), Postives = 60/74 (81.08%), Query Frame = 0


Query: 1  MAVVAYKVP----LFAVALLLAMLSSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLALV 60
          MAVVA K+P    LF VAL+L  LS A AQSL+PAQPPA SDGTSIDQGIAY LMLLALV
Sbjct: 1  MAVVACKIPFSGILFVVALVLTRLSPACAQSLSPAQPPATSDGTSIDQGIAYALMLLALV 60

Query: 61 LTYIIHSADLSINL 71
          LTYIIHSAD  ++L
Sbjct: 61 LTYIIHSADRYVSL 74

[Close]

BLAST of Clc01G02180 vs. NCBI nr
Match: XP_022996281.1 (arabinogalactan peptide 22-like [Cucurbita maxima])

HSP 1 Score: 77.8 bits (190), Expect = 4.1e-11
Identity = 54/76 (71.05%), Postives = 61/76 (80.26%), Query Frame = 0


Query: 1  MAVVAY-KVP---LFAVALLLAML--SSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLA 60
          M VVAY KVP   L AVA +LAML  +SA   SL+PAQPP ASDGTS+DQGIAYVLMLLA
Sbjct: 1  MEVVAYIKVPYGVLVAVAFVLAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLA 60

Query: 61 LVLTYIIHSADLSINL 71
          L+LTYIIH A+L I+L
Sbjct: 61 LLLTYIIHLAELPISL 76

[Close]

BLAST of Clc01G02180 vs. ExPASy Swiss-Prot
Match: O82337 (Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-08
Identity = 35/49 (71.43%), Postives = 40/49 (81.63%), Query Frame = 0


Query: 19 MLSSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLS 68
          +LS A AQSLAPA P   SDGTSIDQGIAY+LM++ALVLTY+IH  D S
Sbjct: 20 ILSLAGAQSLAPA-PAPTSDGTSIDQGIAYLLMVVALVLTYLIHPLDAS 67

[Close]

BLAST of Clc01G02180 vs. ExPASy Swiss-Prot
Match: Q8L9T8 (Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 7.6e-08
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 13 VALLLA-MLSSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIH 63
          V+++ A +L  AHAQS APA P   SDGT+IDQGIAYVLML+ALVLTY+IH
Sbjct: 14 VSIIFAILLPMAHAQSAAPA-PAPTSDGTTIDQGIAYVLMLVALVLTYLIH 63

[Close]

BLAST of Clc01G02180 vs. ExPASy Swiss-Prot
Match: Q9M373 (Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.9e-07
Identity = 39/67 (58.21%), Postives = 47/67 (70.15%), Query Frame = 0


Query: 1  MAVVAYKVPLFAVALLLAMLSSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYI 60
          +AV+A    +FAV     +   A AQSLAPA P   SDGTSIDQGIAY+LM++ALVLTY+
Sbjct: 7  VAVIALFAFVFAV-----ISPFAGAQSLAPA-PSPTSDGTSIDQGIAYLLMVVALVLTYL 66

Query: 61 IHSADLS 68
          IH  D S
Sbjct: 67 IHPLDAS 67

[Close]

BLAST of Clc01G02180 vs. ExPASy Swiss-Prot
Match: Q9FK16 (Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 3.5e-05
Identity = 31/63 (49.21%), Postives = 45/63 (71.43%), Query Frame = 0


Query: 1  MAVVAYKVPLFAVALLLAMLSSAHAQSLAPAQPPA-ASDGTSIDQGIAYVLMLLALVLTY 60
          MA + + + + AV ++++++    AQS + +  PA  SDGTSIDQGIAYVLM++AL LTY
Sbjct: 1  MASLKFPLEILAVFVIISVILLPIAQSHSSSPAPAPTSDGTSIDQGIAYVLMMVALALTY 60

Query: 61 IIH 63
           IH
Sbjct: 61 FIH 63

[Close]

BLAST of Clc01G02180 vs. ExPASy TrEMBL
Match: A0A0A0KK44 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G151510 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 9.3e-17
Identity = 58/74 (78.38%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 1  MAVVAYKVP----LFAVALLLAMLSSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLALV 60
          MAVVA KVP    LF VAL+L  LSSA+AQSL+PAQPPA  DGTSIDQGIAYVLMLLALV
Sbjct: 1  MAVVACKVPFGGILFVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALV 60

Query: 61 LTYIIHSADLSINL 71
          LTYIIHSADL ++L
Sbjct: 61 LTYIIHSADLYVSL 74

[Close]

BLAST of Clc01G02180 vs. ExPASy TrEMBL
Match: A0A5D3C2F1 (Arabinogalactan peptide 22-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G002020 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 8.7e-15
Identity = 55/74 (74.32%), Postives = 60/74 (81.08%), Query Frame = 0


Query: 1  MAVVAYKVP----LFAVALLLAMLSSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLALV 60
          MAVVA K+P    LF VAL+L  LS A AQSL+PAQPPA SDGTSIDQGIAY LMLLALV
Sbjct: 1  MAVVACKIPFSGILFVVALVLTRLSPACAQSLSPAQPPATSDGTSIDQGIAYALMLLALV 60

Query: 61 LTYIIHSADLSINL 71
          LTYIIHSAD  ++L
Sbjct: 61 LTYIIHSADRYVSL 74

[Close]

BLAST of Clc01G02180 vs. ExPASy TrEMBL
Match: A0A1S3ATI9 (arabinogalactan peptide 22-like OS=Cucumis melo OX=3656 GN=LOC103482805 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 8.7e-15
Identity = 55/74 (74.32%), Postives = 60/74 (81.08%), Query Frame = 0


Query: 1  MAVVAYKVP----LFAVALLLAMLSSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLALV 60
          MAVVA K+P    LF VAL+L  LS A AQSL+PAQPPA SDGTSIDQGIAY LMLLALV
Sbjct: 1  MAVVACKIPFSGILFVVALVLTRLSPACAQSLSPAQPPATSDGTSIDQGIAYALMLLALV 60

Query: 61 LTYIIHSADLSINL 71
          LTYIIHSAD  ++L
Sbjct: 61 LTYIIHSADRYVSL 74

[Close]

BLAST of Clc01G02180 vs. ExPASy TrEMBL
Match: A0A6J1K4A3 (arabinogalactan peptide 22-like OS=Cucurbita maxima OX=3661 GN=LOC111491553 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.0e-11
Identity = 54/76 (71.05%), Postives = 61/76 (80.26%), Query Frame = 0


Query: 1  MAVVAY-KVP---LFAVALLLAML--SSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLA 60
          M VVAY KVP   L AVA +LAML  +SA   SL+PAQPP ASDGTS+DQGIAYVLMLLA
Sbjct: 1  MEVVAYIKVPYGVLVAVAFVLAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLA 60

Query: 61 LVLTYIIHSADLSINL 71
          L+LTYIIH A+L I+L
Sbjct: 61 LLLTYIIHLAELPISL 76

[Close]

BLAST of Clc01G02180 vs. ExPASy TrEMBL
Match: A0A6J1CXM0 (arabinogalactan peptide 22-like OS=Momordica charantia OX=3673 GN=LOC111015367 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-09
Identity = 40/59 (67.80%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 11 FAVALLLAMLSSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSIN 70
          F +   L + + A  +S++PAQP A SDGTSIDQGIAY LMLLALVLTYIIHSADLSI+
Sbjct: 21 FVLGAFLPVQAHAQPESMSPAQPLATSDGTSIDQGIAYALMLLALVLTYIIHSADLSIS 79

[Close]

BLAST of Clc01G02180 vs. TAIR 10
Match: AT2G46330.1 (arabinogalactan protein 16 )

HSP 1 Score: 60.1 bits (144), Expect = 8.3e-10
Identity = 35/49 (71.43%), Postives = 40/49 (81.63%), Query Frame = 0


Query: 19 MLSSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLS 68
          +LS A AQSLAPA P   SDGTSIDQGIAY+LM++ALVLTY+IH  D S
Sbjct: 20 ILSLAGAQSLAPA-PAPTSDGTSIDQGIAYLLMVVALVLTYLIHPLDAS 67

[Close]

BLAST of Clc01G02180 vs. TAIR 10
Match: AT5G24105.1 (arabinogalactan protein 41 )

HSP 1 Score: 57.4 bits (137), Expect = 5.4e-09
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 13 VALLLA-MLSSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIH 63
          V+++ A +L  AHAQS APA P   SDGT+IDQGIAYVLML+ALVLTY+IH
Sbjct: 14 VSIIFAILLPMAHAQSAAPA-PAPTSDGTTIDQGIAYVLMLVALVLTYLIH 63

[Close]

BLAST of Clc01G02180 vs. TAIR 10
Match: AT3G61640.1 (arabinogalactan protein 20 )

HSP 1 Score: 55.5 bits (132), Expect = 2.1e-08
Identity = 39/67 (58.21%), Postives = 47/67 (70.15%), Query Frame = 0


Query: 1  MAVVAYKVPLFAVALLLAMLSSAHAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYI 60
          +AV+A    +FAV     +   A AQSLAPA P   SDGTSIDQGIAY+LM++ALVLTY+
Sbjct: 7  VAVIALFAFVFAV-----ISPFAGAQSLAPA-PSPTSDGTSIDQGIAYLLMVVALVLTYL 66

Query: 61 IHSADLS 68
          IH  D S
Sbjct: 67 IHPLDAS 67

[Close]

BLAST of Clc01G02180 vs. TAIR 10
Match: AT5G53250.1 (arabinogalactan protein 22 )

HSP 1 Score: 48.5 bits (114), Expect = 2.5e-06
Identity = 31/63 (49.21%), Postives = 45/63 (71.43%), Query Frame = 0


Query: 1  MAVVAYKVPLFAVALLLAMLSSAHAQSLAPAQPPA-ASDGTSIDQGIAYVLMLLALVLTY 60
          MA + + + + AV ++++++    AQS + +  PA  SDGTSIDQGIAYVLM++AL LTY
Sbjct: 1  MASLKFPLEILAVFVIISVILLPIAQSHSSSPAPAPTSDGTSIDQGIAYVLMMVALALTY 60

Query: 61 IIH 63
           IH
Sbjct: 61 FIH 63

The following BLAST results are available for this feature:

BLAST of Clc01G02180 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143956.1	1.9e-16	78.38	arabinogalactan protein 41 [Cucumis sativus] >KGN50035.1 hypothetical protein Cs...	[more]
KAG7017004.1	5.6e-16	79.17	Arabinogalactan peptide 16 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6579545.1	1.6e-15	79.17	Arabinogalactan protein 16, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_008437371.1	1.8e-14	74.32	PREDICTED: arabinogalactan peptide 22-like [Cucumis melo] >KAA0042697.1 arabinog...	[more]
XP_022996281.1	4.1e-11	71.05	arabinogalactan peptide 22-like [Cucurbita maxima]	[more]

BLAST of Clc01G02180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82337	1.2e-08	71.43	Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1	[more]
Q8L9T8	7.6e-08	68.63	Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1	[more]
Q9M373	2.9e-07	58.21	Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1	[more]
Q9FK16	3.5e-05	49.21	Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1	[more]

BLAST of Clc01G02180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KK44	9.3e-17	78.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G151510 PE=4 SV=1	[more]
A0A5D3C2F1	8.7e-15	74.32	Arabinogalactan peptide 22-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3ATI9	8.7e-15	74.32	arabinogalactan peptide 22-like OS=Cucumis melo OX=3656 GN=LOC103482805 PE=4 SV=...	[more]
A0A6J1K4A3	2.0e-11	71.05	arabinogalactan peptide 22-like OS=Cucurbita maxima OX=3661 GN=LOC111491553 PE=4...	[more]
A0A6J1CXM0	1.1e-09	67.80	arabinogalactan peptide 22-like OS=Momordica charantia OX=3673 GN=LOC111015367 P...	[more]

BLAST of Clc01G02180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46330.1	8.3e-10	71.43	arabinogalactan protein 16	[more]
AT5G24105.1	5.4e-09	68.63	arabinogalactan protein 41	[more]
AT3G61640.1	2.1e-08	58.21	arabinogalactan protein 20	[more]
AT5G53250.1	2.5e-06	49.21	arabinogalactan protein 22	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009424	Arabinogalactan protein 16/20/22/41	PFAM	PF06376	AGP	coord: 29..62 e-value: 3.2E-17 score: 62.1
IPR009424	Arabinogalactan protein 16/20/22/41	PANTHER	PTHR33374	ARABINOGALACTAN PROTEIN 20	coord: 1..68
None	No IPR available	PANTHER	PTHR33374:SF38	ARABINOGALACTAN PROTEIN 41	coord: 1..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc01G02180.1	Clc01G02180.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane