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Clc01G02110 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGTAAATTAAAAAAAGAGGGGGTGAGAATAATAATAAATTGGAAAAAAGAGGGAAGAGAAGAAGGGGCTTAGTGGAGAAGTCAATGATGCCCTTGAAAATAAATAAGTGCAGAGAAAAGACTTTGTAAAAGAAATCCATTTTCTGATCGTCTACCCAAACCCAACGCGTTTCTTTCTCCGCCCGTCATTAAAACCACTTCCTCTGTTTCTTCTTCTTCTTCTTCCTCACCGGCAAAAATGGCGAGCCCTAAATTCAGCAAATCCAAATCCTCTCAATCCGCCGTCGTTTGGGACTGTGGAAGCTCCCTTTACGATTCCTTCGAACTCAATTCCCTCAAACGCCAACTCGATTCCGCTATTGCTTCAAGAACCCTGTCCATGCCTCATCTCCCTACCCGCCGCTGCCTTCTTCCTCCTCCTCCTCCACTGCCGCCCTCCAAAAAGCCCTCCAAGATTTCCAGGTCTCTGCACAAATTTCTCCGGTCGGTCTTCGGGCACAAGCCGAATTCGAGCCCTACCTTCGAAGCTAATCCGGAACGAGTCGATGCTGGATTCTACGTTCTGTACGAAGATGAGCCGAATTCAGTTTCTGCGGTTCCGGAGGTTGGATTCGCCGGAATTTCGCCCGAAATTGGCTCTTTGGTTCGCCGGACTGCGTCCGAGAGATTCACGGGGGCCACTTCTATGGGTATTTCTTGTGCTTGAAGGAGCCTTCTTAGAATATGTAAATTAGTTAAGTTTCTTACAAATAATTTTTAACAATTATAACCTCTTTTTTTT TGTAAATTAAAAAAAGAGGGGGTGAGAATAATAATAAATTGGAAAAAAGAGGGAAGAGAAGAAGGGGCTTAGTGGAGAAGTCAATGATGCCCTTGAAAATAAATAAGTGCAGAGAAAAGACTTTGTAAAAGAAATCCATTTTCTGATCGTCTACCCAAACCCAACGCGTTTCTTTCTCCGCCCGTCATTAAAACCACTTCCTCTGTTTCTTCTTCTTCTTCTTCCTCACCGGCAAAAATGGCGAGCCCTAAATTCAGCAAATCCAAATCCTCTCAATCCGCCGTCGTTTGGGACTGTGGAAGCTCCCTTTACGATTCCTTCGAACTCAATTCCCTCAAACGCCAACTCGATTCCGCTATTGCTTCAAGAACCCTGTCCATGCCTCATCTCCCTACCCGCCGCTGCCTTCTTCCTCCTCCTCCTCCACTGCCGCCCTCCAAAAAGCCCTCCAAGATTTCCAGGTCTCTGCACAAATTTCTCCGGTCGGTCTTCGGGCACAAGCCGAATTCGAGCCCTACCTTCGAAGCTAATCCGGAACGAGTCGATGCTGGATTCTACGTTCTGTACGAAGATGAGCCGAATTCAGTTTCTGCGGTTCCGGAGGTTGGATTCGCCGGAATTTCGCCCGAAATTGGCTCTTTGGTTCGCCGGACTGCGTCCGAGAGATTCACGGGGGCCACTTCTATGGGTATTTCTTGTGCTTGAAGGAGCCTTCTTAGAATATGTAAATTAGTTAAGTTTCTTACAAATAATTTTTAACAATTATAACCTCTTTTTTTT ATGGCGAGCCCTAAATTCAGCAAATCCAAATCCTCTCAATCCGCCGTCGTTTGGGACTGTGGAAGCTCCCTTTACGATTCCTTCGAACTCAATTCCCTCAAACGCCAACTCGATTCCGCTATTGCTTCAAGAACCCTGTCCATGCCTCATCTCCCTACCCGCCGCTGCCTTCTTCCTCCTCCTCCTCCACTGCCGCCCTCCAAAAAGCCCTCCAAGATTTCCAGGTCTCTGCACAAATTTCTCCGGTCGGTCTTCGGGCACAAGCCGAATTCGAGCCCTACCTTCGAAGCTAATCCGGAACGAGTCGATGCTGGATTCTACGTTCTGTACGAAGATGAGCCGAATTCAGTTTCTGCGGTTCCGGAGGTTGGATTCGCCGGAATTTCGCCCGAAATTGGCTCTTTGGTTCGCCGGACTGCGTCCGAGAGATTCACGGGGGCCACTTCTATGGGTATTTCTTGTGCTTGA MASPKFSKSKSSQSAVVWDCGSSLYDSFELNSLKRQLDSAIASRTLSMPHLPTRRCLLPPPPPLPPSKKPSKISRSLHKFLRSVFGHKPNSSPTFEANPERVDAGFYVLYEDEPNSVSAVPEVGFAGISPEIGSLVRRTASERFTGATSMGISCA Homology
BLAST of Clc01G02110 vs. NCBI nr
Match: XP_038875345.1 (uncharacterized protein LOC120067824 [Benincasa hispida]) HSP 1 Score: 264.6 bits (675), Expect = 5.3e-67 Identity = 138/157 (87.90%), Postives = 145/157 (92.36%), Query Frame = 0
BLAST of Clc01G02110 vs. NCBI nr
Match: XP_022929008.1 (uncharacterized protein LOC111435738 [Cucurbita moschata] >XP_023551387.1 uncharacterized protein LOC111809224 [Cucurbita pepo subsp. pepo] >KAG6579550.1 hypothetical protein SDJN03_23998, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017009.1 hypothetical protein SDJN02_22120, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 261.2 bits (666), Expect = 5.9e-66 Identity = 134/155 (86.45%), Postives = 143/155 (92.26%), Query Frame = 0
BLAST of Clc01G02110 vs. NCBI nr
Match: XP_008437381.1 (PREDICTED: uncharacterized protein LOC103482814 [Cucumis melo] >KAA0042691.1 putative inactive serine/threonine-protein kinase slob1 isoform X1 [Cucumis melo var. makuwa] >TYK06094.1 putative inactive serine/threonine-protein kinase slob1 isoform X1 [Cucumis melo var. makuwa]) HSP 1 Score: 254.6 bits (649), Expect = 5.5e-64 Identity = 135/158 (85.44%), Postives = 141/158 (89.24%), Query Frame = 0
BLAST of Clc01G02110 vs. NCBI nr
Match: XP_022970102.1 (uncharacterized protein LOC111469095 [Cucurbita maxima]) HSP 1 Score: 254.2 bits (648), Expect = 7.2e-64 Identity = 131/155 (84.52%), Postives = 141/155 (90.97%), Query Frame = 0
BLAST of Clc01G02110 vs. NCBI nr
Match: XP_011654703.1 (uncharacterized protein LOC105435436 [Cucumis sativus] >KGN50029.1 hypothetical protein Csa_000541 [Cucumis sativus]) HSP 1 Score: 245.7 bits (626), Expect = 2.5e-61 Identity = 134/161 (83.23%), Postives = 139/161 (86.34%), Query Frame = 0
BLAST of Clc01G02110 vs. ExPASy TrEMBL
Match: A0A6J1EQS3 (uncharacterized protein LOC111435738 OS=Cucurbita moschata OX=3662 GN=LOC111435738 PE=4 SV=1) HSP 1 Score: 261.2 bits (666), Expect = 2.8e-66 Identity = 134/155 (86.45%), Postives = 143/155 (92.26%), Query Frame = 0
BLAST of Clc01G02110 vs. ExPASy TrEMBL
Match: A0A5D3C469 (Putative inactive serine/threonine-protein kinase slob1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001950 PE=4 SV=1) HSP 1 Score: 254.6 bits (649), Expect = 2.7e-64 Identity = 135/158 (85.44%), Postives = 141/158 (89.24%), Query Frame = 0
BLAST of Clc01G02110 vs. ExPASy TrEMBL
Match: A0A1S3AU09 (uncharacterized protein LOC103482814 OS=Cucumis melo OX=3656 GN=LOC103482814 PE=4 SV=1) HSP 1 Score: 254.6 bits (649), Expect = 2.7e-64 Identity = 135/158 (85.44%), Postives = 141/158 (89.24%), Query Frame = 0
BLAST of Clc01G02110 vs. ExPASy TrEMBL
Match: A0A6J1HY70 (uncharacterized protein LOC111469095 OS=Cucurbita maxima OX=3661 GN=LOC111469095 PE=4 SV=1) HSP 1 Score: 254.2 bits (648), Expect = 3.5e-64 Identity = 131/155 (84.52%), Postives = 141/155 (90.97%), Query Frame = 0
BLAST of Clc01G02110 vs. ExPASy TrEMBL
Match: A0A0A0KMF8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G150470 PE=4 SV=1) HSP 1 Score: 245.7 bits (626), Expect = 1.2e-61 Identity = 134/161 (83.23%), Postives = 139/161 (86.34%), Query Frame = 0
BLAST of Clc01G02110 vs. TAIR 10
Match: AT5G41810.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64340.1); Has 876 Blast hits to 690 proteins in 132 species: Archae - 0; Bacteria - 38; Metazoa - 180; Fungi - 112; Plants - 59; Viruses - 2; Other Eukaryotes - 485 (source: NCBI BLink). ) HSP 1 Score: 120.2 bits (300), Expect = 1.5e-27 Identity = 80/171 (46.78%), Postives = 102/171 (59.65%), Query Frame = 0
BLAST of Clc01G02110 vs. TAIR 10
Match: AT5G41810.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64340.1); Has 514 Blast hits to 437 proteins in 98 species: Archae - 0; Bacteria - 21; Metazoa - 115; Fungi - 53; Plants - 52; Viruses - 5; Other Eukaryotes - 268 (source: NCBI BLink). ) HSP 1 Score: 120.2 bits (300), Expect = 1.5e-27 Identity = 80/171 (46.78%), Postives = 102/171 (59.65%), Query Frame = 0
BLAST of Clc01G02110 vs. TAIR 10
Match: AT1G64340.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 90.1 bits (222), Expect = 1.7e-18 Identity = 65/157 (41.40%), Postives = 90/157 (57.32%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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