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Clc01G02100 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGATAACCCATCTCTGTTCTCTTCGTCATTCTCCAACCTCCCCATTCTTCTCAAATTTTCTGAGTTCTTCTCCTTCTTCCCTCAATGTTGGAGCAAACCCACGCAGGATTTCAATTGAGCTCCACCCTCTCAGAAACAGAAGCTTCAACAGTAAAAGAAATGGGATTATTTGTGGGGCAATTTTGCCTGTGGATCCATGGGCGCCCAACATCGATTCTCAGAGCATAGCCTCCCAGATTTTTGCCTTTTCCCTGTTTCCTTACATTGGTTTCTTGTACTTCATCACCAAATCAAAGACGGCTCCCAAGCTGACTCTCTTCGGTTTCTATTTCTTGCTTGCCTTTGTGGGTGCTACCAGTGAGTTCCCATCTCCTTTGTTTTCGTTTTTAATTTGATTTACAGTTCTATATGAATAATCGTTTCCCCTTTGTTTCAATTATCCATTGAAATGGGTGACACTACTTCTTCAATTTTAGAGCAATTAGCATGTGGGTCTATGAATTACCACCGATTTTGAGGCTCTGAGTTACTACATTAGGAGGATATATCTACCCATATGTATCTGTTTGCAGAAGAATTGGCATTTGTATCCATTTTGTTCAAGTTTACAAAACAGTAAGCACAGTGTTTGAAATGTTGTTAGGATATCTATTAGAAATATCGTTTGCATACTGAGGCTTTTTTTTCGTGTTTTTGAGTTCATTCAACAATTGTGGAACTGTGTGGGTGGATGGAACCGTCGACCTTTGAGATGATAATTTTTCATATTTGGGCATACTAGTGATTAGCAACGATTAAAACATCAATGTCAATATGATATTGGAATTTCGATTTTAAGGATATATTGATAAAATGTCGATATCAATGGATATTTAGGTAAATCAACAAATTTATAAAAATTATTTAAATTATTGATTAAGTTGTTTTTACTTTCAAACTTAGTTTTTGATCTTGTCATTAATATTCATATTCATATTTGAATCAATAGAATATATTTTTTAAGTTTTATGTATGTTTATAAAAGATAACGAAGATATCAATTGAAGAATTGATCTTTAGTATTGACATCGAACCCTCCGATTTACAAGTGTATCGACAGACATTTCAATCCTTGGATATTAGAAAATGGGTTGTAATAGGGTGGGTTAGGGAGAACAAGGAGTAGGCCGTTTGCAGAAACGGTTTGTTGAGGAGTTCAAACCTCTCGAAATGCTTGGGATATTATAACTTTTTCCTTACCAGTACCATTTTCTGTTAGTTTCCATTTTGATTTTTGGTTTCTTTCACAAGAACTTTCTCCAAATCTGGTTGAAATTCCACAACTCCCATATGGGGTTCATTATATTTATAATAATTCTTTTAACAGTTTTTGGGTGCAAATTTTTGTCCTAATGCCTATTATTTATTGCTGATAACTACTTGATTTCAACTCATGGTGGCTACAACTCTGCAGTCCCTGCTGGAATATATGGTAAGTATTACTCATCAAACAACATTTTCTATTCACATTGCTTTCATTTTTTTTTCATAGATGGCCAAATTTCTTAAATTCCAATTCTTTTGCTCTCTTGGAACAGCAAAGGTTCATTATGGAACTTCCTTGTCTAATGTTGATTGGTTACATGGAGGAGCTGAATCACTTCTCACTCTGACAAATCTATTCATTGTGTTGGGTTTGAGAAGAGCTCTTAGGAAATATGGGGAGGCTGAAAACTCTACATCCTCACCTGTTCTAGAGTTGGAAAAAGAGAAGGCTGTGTTAGATAAGTAGTTGCACATTCCAAACCCTTCTGTTGAAATATTTGTTTCTATGGGCTTGGTGCCATGTAAATATAGGATGAAAAATCGAGGGATGTTAAAAGTGTGCATTCTCGCTTTTCTCTCTCCGCTACTGTTACATAAACTGCCCCTTTGAGTTGTATGAACTGTCACTGATCGACCATTATAATTGTGAATCTGTCCTGGATTTTCTTTATTGAAACTTCCGGCCAACTTCTTAGCATTTGCACAATTTTAAGGTCTTTTAGGTTTCAACAAAATTCTCCATTGTGGACTACTTTGATGCCTTTACTGCAGCAGCATGCTGCTGTCTATTGTACATGCTTTACTTACTCTGGTCATTGCTTTTTGTTAAGAACGTTTTCTCTGAATTACAGTAGCTACAAGGAACTATTCTAAGTTCCTACCGATCTGTCTCTTAGTTCTAATCCATCTTTTGTATTGTTTTGGAATTTGAGGTTTAAAGAAATGACATATACCTTCTGGAAGACAATCCAAAAGTATGCCAATAATTTTCTAAGCAAAGCTCGTTCTACTGCTGCAGAGGCAATTCCCACACTGATGATCTTGGGTTAAATAATCATCCTTTGGTGGTATATCTTACATCAATCTCACTCAGTTTTAGAACTGTCGATGCAGTTTGTCATCTATGAATTTTATCGGTTCTTGCAAGTAGGGCATGACGATCCTCACTTGTCTGCTTCAAAGTGATATTTGGAAAGCATTGTTTCTCTTTTTCTTCATTCCACAGTTGCTCCAAAGCTTATTTTACATTATCATATTGGTGTGGTGGACTACGAGCTAGAATTGATAATCTACGTTCTACAAGTGTTCCATTGTTGTATTTTCTTTGGTGTTTCTTTGATTCTGCAAGTGCTATGTTAATATGAGTGCAAAAACTCCTATTGTACAGAAAAAGTGTTAAATATATTGAACTTGAACCATGTTTGAGTCTTGCTCCTTCTCTAATGAGCCAATTGTTGATTCAAATGCAGTTGTTAGCGTTTTTCTCATGGTTTCAGATTCTTTTGGACAACCTCACTGTTGTTTGAGATTATATGAAAACAAATGATCCATTATATCTGTTTAGTCTATAAAGAAGTGTGCTTTCTTTTAACTTTGTTCAGATACAAGTGGATTTGGATTGGACACGCTGA ATGATAACCCATCTCTGTTCTCTTCGTCATTCTCCAACCTCCCCATTCTTCTCAAATTTTCTGAGTTCTTCTCCTTCTTCCCTCAATGTTGGAGCAAACCCACGCAGGATTTCAATTGAGCTCCACCCTCTCAGAAACAGAAGCTTCAACAGTAAAAGAAATGGGATTATTTGTGGGGCAATTTTGCCTGTGGATCCATGGGCGCCCAACATCGATTCTCAGAGCATAGCCTCCCAGATTTTTGCCTTTTCCCTGTTTCCTTACATTGGTTTCTTGTACTTCATCACCAAATCAAAGACGGCTCCCAAGCTGACTCTCTTCGGTTTCTATTTCTTGCTTGCCTTTGTGGGTGCTACCATCCCTGCTGGAATATATGCAAAGGTTCATTATGGAACTTCCTTGTCTAATGTTGATTGGTTACATGGAGGAGCTGAATCACTTCTCACTCTGACAAATCTATTCATTGTGTTGGGTTTGAGAAGAGCTCTTAGGAAATATGGGGAGGCTGAAAACTCTACATCCTCACCTGTTCTAGAGTTGGAAAAAGAGAAGGCTGTAGGCAATTCCCACACTGATGATCTTGGGTTAAATAATCATCCTTTGGTGATACAAGTGGATTTGGATTGGACACGCTGA ATGATAACCCATCTCTGTTCTCTTCGTCATTCTCCAACCTCCCCATTCTTCTCAAATTTTCTGAGTTCTTCTCCTTCTTCCCTCAATGTTGGAGCAAACCCACGCAGGATTTCAATTGAGCTCCACCCTCTCAGAAACAGAAGCTTCAACAGTAAAAGAAATGGGATTATTTGTGGGGCAATTTTGCCTGTGGATCCATGGGCGCCCAACATCGATTCTCAGAGCATAGCCTCCCAGATTTTTGCCTTTTCCCTGTTTCCTTACATTGGTTTCTTGTACTTCATCACCAAATCAAAGACGGCTCCCAAGCTGACTCTCTTCGGTTTCTATTTCTTGCTTGCCTTTGTGGGTGCTACCATCCCTGCTGGAATATATGCAAAGGTTCATTATGGAACTTCCTTGTCTAATGTTGATTGGTTACATGGAGGAGCTGAATCACTTCTCACTCTGACAAATCTATTCATTGTGTTGGGTTTGAGAAGAGCTCTTAGGAAATATGGGGAGGCTGAAAACTCTACATCCTCACCTGTTCTAGAGTTGGAAAAAGAGAAGGCTGTAGGCAATTCCCACACTGATGATCTTGGGTTAAATAATCATCCTTTGGTGATACAAGTGGATTTGGATTGGACACGCTGA MITHLCSLRHSPTSPFFSNFLSSSPSSLNVGANPRRISIELHPLRNRSFNSKRNGIICGAILPVDPWAPNIDSQSIASQIFAFSLFPYIGFLYFITKSKTAPKLTLFGFYFLLAFVGATIPAGIYAKVHYGTSLSNVDWLHGGAESLLTLTNLFIVLGLRRALRKYGEAENSTSSPVLELEKEKAVGNSHTDDLGLNNHPLVIQVDLDWTR Homology
BLAST of Clc01G02100 vs. NCBI nr
Match: TYK06093.1 (1-acyl-sn-glycerol-3-phosphate acyltransferase delta isoform 1 [Cucumis melo var. makuwa]) HSP 1 Score: 340.1 bits (871), Expect = 1.4e-89 Identity = 174/187 (93.05%), Postives = 177/187 (94.65%), Query Frame = 0
BLAST of Clc01G02100 vs. NCBI nr
Match: XP_038876261.1 (uncharacterized protein LOC120068528 isoform X2 [Benincasa hispida]) HSP 1 Score: 339.3 bits (869), Expect = 2.3e-89 Identity = 172/186 (92.47%), Postives = 175/186 (94.09%), Query Frame = 0
BLAST of Clc01G02100 vs. NCBI nr
Match: XP_004143873.1 (uncharacterized protein LOC101210365 isoform X1 [Cucumis sativus] >KGN50028.1 hypothetical protein Csa_000626 [Cucumis sativus]) HSP 1 Score: 338.6 bits (867), Expect = 3.9e-89 Identity = 174/187 (93.05%), Postives = 177/187 (94.65%), Query Frame = 0
BLAST of Clc01G02100 vs. NCBI nr
Match: XP_038876260.1 (uncharacterized protein LOC120068528 isoform X1 [Benincasa hispida]) HSP 1 Score: 329.3 bits (843), Expect = 2.4e-86 Identity = 171/200 (85.50%), Postives = 175/200 (87.50%), Query Frame = 0
BLAST of Clc01G02100 vs. NCBI nr
Match: KAA0042690.1 (DUF3593 domain-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 320.1 bits (819), Expect = 1.4e-83 Identity = 167/187 (89.30%), Postives = 170/187 (90.91%), Query Frame = 0
BLAST of Clc01G02100 vs. ExPASy TrEMBL
Match: A0A5D3C2E2 (1-acyl-sn-glycerol-3-phosphate acyltransferase delta isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001940 PE=4 SV=1) HSP 1 Score: 340.1 bits (871), Expect = 6.5e-90 Identity = 174/187 (93.05%), Postives = 177/187 (94.65%), Query Frame = 0
BLAST of Clc01G02100 vs. ExPASy TrEMBL
Match: A0A0A0KKE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G150460 PE=4 SV=1) HSP 1 Score: 338.6 bits (867), Expect = 1.9e-89 Identity = 174/187 (93.05%), Postives = 177/187 (94.65%), Query Frame = 0
BLAST of Clc01G02100 vs. ExPASy TrEMBL
Match: A0A5A7TH63 (DUF3593 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G001880 PE=4 SV=1) HSP 1 Score: 320.1 bits (819), Expect = 7.0e-84 Identity = 167/187 (89.30%), Postives = 170/187 (90.91%), Query Frame = 0
BLAST of Clc01G02100 vs. ExPASy TrEMBL
Match: A0A6J1EL81 (uncharacterized protein LOC111435592 OS=Cucurbita moschata OX=3662 GN=LOC111435592 PE=4 SV=1) HSP 1 Score: 312.0 bits (798), Expect = 1.9e-81 Identity = 162/185 (87.57%), Postives = 167/185 (90.27%), Query Frame = 0
BLAST of Clc01G02100 vs. ExPASy TrEMBL
Match: A0A6J1HZP6 (uncharacterized protein LOC111469097 OS=Cucurbita maxima OX=3661 GN=LOC111469097 PE=4 SV=1) HSP 1 Score: 311.6 bits (797), Expect = 2.5e-81 Identity = 161/185 (87.03%), Postives = 167/185 (90.27%), Query Frame = 0
BLAST of Clc01G02100 vs. TAIR 10
Match: AT1G64355.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3593 (InterPro:IPR021995); Has 301 Blast hits to 301 proteins in 96 species: Archae - 0; Bacteria - 143; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink). ) HSP 1 Score: 207.6 bits (527), Expect = 9.7e-54 Identity = 113/169 (66.86%), Postives = 130/169 (76.92%), Query Frame = 0
BLAST of Clc01G02100 vs. TAIR 10
Match: AT1G64355.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3593 (InterPro:IPR021995); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 134.4 bits (337), Expect = 1.0e-31 Identity = 78/138 (56.52%), Postives = 94/138 (68.12%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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