Clc01G02090 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc01G02090
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Myb-like domain-containing protein
Location	ClcChr01: 1846528 .. 1848317 (+)
RNA-Seq Expression	Clc01G02090
Synteny	Clc01G02090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCAAATTTCCCGAAAGTTGGCGTGTATTTTGGCTTTCAGTGAATATCGTCTCGCTAGTCTCGTTCTCTCTGGTATCTTTTCGTCTCTATGGTATTGTCACTCTCGCTCTCACTCTCGCTAGTCTCGCTCTCTATGGTATTGTGAGCGGGATCAACGACGATAACATTGAGACGAAAGGATACCAGATAGAGCGAGACCAACAAGAGTGAGACGATATTCACTGAAAGCCAAAATACACACCAACTTTCAAGAAATTTGGGCATTCTGTGACTTTTCCCGTAAGATCTTGTTAGAAACCTTGCGAAAAAAGTCACACAATGCCCAAATTTTCCAAAAGTTGGCGTGTATTTGGGCATCCTGTCACTTTTCCTATCAACTTTTTCAACTTATGGGAAACATGAATTTACAAAAAAAATGACAGCAAGCAAAAAAACGCACACCAAATTCTTTTTCTTTCTGATTTTAGACATTTCCTACACATATTAGACCTCCTCTACTTGAAAATTTTGGATTTACTTTTTCGTTTTTTACCGCCAACTATTTGAAAACCTAAATTTCTACAAATCAGCGTTTCAAAGAAGTTTTTTGTGAATTTATTTCCAGAAAATTAGGTCACATAGGATGGGTTTTACTACAAATGACATAAATTAGGAAGTACTGTAAAAAAAAAGTGGATTCTAATGAAGAAGACGATGTGGTTTGAGTGTTGAGGAAGATGGTTTTTAGGGGTATTCACGTTATTTCATCATGTGGGACCCATCTCTAAAATTCTAAAAAGTTGAAAAATGAGTTAGAAAAATAAGTTTTTAAAAAAGAGGTTAGTTTTGTCCCATAAAAAACTTTTTGGGTTAGAAATAGCAATTTCCGTCAACCTTTCAAACTAGTATCAAAGGACAAGCACACCCAACTGATTCTATGAACAAAATGGATGAATGCAAGTAGATCGGTTCGATTTGATTTTTGGTCAAAATTTACGTCGTACCCAGATATTCAAATTTTGATTTTTACTTTTACCTATAATCAGGGGTAATATTCTCTTTACCACAGTGGTAGAAACTCTAAGAATATATGAAAAAGTAAAAGAGAAGAGAAGGGTCAAGAGGTCAAACATTTGAAGCTTGATAACTACAAGTCAATGGCTAATCAGTTGTTTGCTTGTTTGGTTACACTGGTCGTTCCAGTTGAGTTCAAAGAGCTAGCTACAGCTAAGGGAAAAAGAAACTACCAATCTTCAACAAATAAATAAGCAACAAATCTTCAGAGAAACTGAAACCGGGTTCTCATTTTCCACCAAAAGAGTTGCATTCTGAGGCAATGGAATCCGAAGCTAAGAAGACTGCAAAACAGCCACGAAAACAGTCCAAGAGCAGGAACTCGAGCTCGGAAGGTGTCTTGATTTTTCTGGTTTTTCTGCCATGGCTACTGAGAAGTGAGAACTTTTTTGGTTGGTAAAGGAAGTTGTTATAGCTGTTTTTCATTTTTAATGTGTTTGTTTTGTAGAAGTTACCAGTTTGGAATGGGAGGTCGTTCAAATCAGTGAGCAGGAGGAGGATCTCATTCATAGAATGCACAGACTTGTTGGAGACAGGTTCTATGTCTCTCTCTTTCAAATGGCTCTCTCTTTTTCTACGAAAAATTCGATGATTCTCCGCCATCAACATTCTCGTTCTGAACATGTTTTATTACTGTTACATTGAACTTCAGGTGGGATTTGATCGCGGGACGAATTCCAGGACGAACTGCAGTAGAAATTGAGAGGTTTTGGATATTGAAACATGGTTCCTGA

mRNA sequence

ATGCTCAAATTTCCCGAAAGTTGGCGTGTATTTTGGCTTTCAGTGAATATCGTCTCGCTAGTCTCGTTCTCTCTGGTATCTTTTCGTCTCTATGGTATTGTCACTCTCGCTCTCACTCTCGCTAGTCTCGCTCTCTATGGTATTGTGAGCGGGATCAACGACGATAACATTGAGACGAAAGGATACCAGATAGAGCGAGACCAACAAGACAACAAATCTTCAGAGAAACTGAAACCGGGTTCTCATTTTCCACCAAAAGAGTTGCATTCTGAGGCAATGGAATCCGAAGCTAAGAAGACTGCAAAACAGCCACGAAAACAGTCCAAGAGCAGGAACTCGAGCTCGGAAGGTGTCTTGATTTTTCTGGTTTTTCTGCCATGGCTACTGAGAAAAGTTACCAGTTTGGAATGGGAGGTCGTTCAAATCAGTGAGCAGGAGGAGGATCTCATTCATAGAATGCACAGACTTGTTGGAGACAGGTGGGATTTGATCGCGGGACGAATTCCAGGACGAACTGCAGTAGAAATTGAGAGGTTTTGGATATTGAAACATGGTTCCTGA

Coding sequence (CDS)

ATGCTCAAATTTCCCGAAAGTTGGCGTGTATTTTGGCTTTCAGTGAATATCGTCTCGCTAGTCTCGTTCTCTCTGGTATCTTTTCGTCTCTATGGTATTGTCACTCTCGCTCTCACTCTCGCTAGTCTCGCTCTCTATGGTATTGTGAGCGGGATCAACGACGATAACATTGAGACGAAAGGATACCAGATAGAGCGAGACCAACAAGACAACAAATCTTCAGAGAAACTGAAACCGGGTTCTCATTTTCCACCAAAAGAGTTGCATTCTGAGGCAATGGAATCCGAAGCTAAGAAGACTGCAAAACAGCCACGAAAACAGTCCAAGAGCAGGAACTCGAGCTCGGAAGGTGTCTTGATTTTTCTGGTTTTTCTGCCATGGCTACTGAGAAAAGTTACCAGTTTGGAATGGGAGGTCGTTCAAATCAGTGAGCAGGAGGAGGATCTCATTCATAGAATGCACAGACTTGTTGGAGACAGGTGGGATTTGATCGCGGGACGAATTCCAGGACGAACTGCAGTAGAAATTGAGAGGTTTTGGATATTGAAACATGGTTCCTGA

Protein sequence

MLKFPESWRVFWLSVNIVSLVSFSLVSFRLYGIVTLALTLASLALYGIVSGINDDNIETKGYQIERDQQDNKSSEKLKPGSHFPPKELHSEAMESEAKKTAKQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKHGS

Homology

[Close]

BLAST of Clc01G02090 vs. NCBI nr
Match: XP_038874276.1 (transcription factor CPC-like [Benincasa hispida])

HSP 1 Score: 140.2 bits (352), Expect = 1.8e-29
Identity = 72/94 (76.60%), Postives = 77/94 (81.91%), Query Frame = 0


Query: 93  MESEAKKTAKQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHR 152
           ME EAKKTAKQP+KQSK R S+SE              +VTSLEWEV+QIS+QEEDLIHR
Sbjct: 1   MEIEAKKTAKQPQKQSKRRKSNSE--------------EVTSLEWEVIQISDQEEDLIHR 60

Query: 153 MHRLVGDRWDLIAGRIPGRTAVEIERFWILKHGS 187
           MHRLVGDRWDLIAGRIPGRTAVEIERFWILKHGS
Sbjct: 61  MHRLVGDRWDLIAGRIPGRTAVEIERFWILKHGS 80

[Close]

BLAST of Clc01G02090 vs. NCBI nr
Match: XP_022146038.1 (transcription factor CPC-like isoform X2 [Momordica charantia])

HSP 1 Score: 132.9 bits (333), Expect = 2.9e-27
Identity = 69/94 (73.40%), Postives = 75/94 (79.79%), Query Frame = 0


Query: 93  MESEAKKTAKQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHR 152
           ME EAKK  KQP+KQSKSRNSSSE              +VTSLEW+++QISEQEEDLI R
Sbjct: 1   MEDEAKKMEKQPQKQSKSRNSSSE--------------EVTSLEWKLIQISEQEEDLICR 60

Query: 153 MHRLVGDRWDLIAGRIPGRTAVEIERFWILKHGS 187
           MH+LVGDRWDLIAGRIPGRTAVEIERFWILKH S
Sbjct: 61  MHKLVGDRWDLIAGRIPGRTAVEIERFWILKHAS 80

[Close]

BLAST of Clc01G02090 vs. NCBI nr
Match: XP_038680402.1 (transcription factor CPC-like [Tripterygium wilfordii])

HSP 1 Score: 107.5 bits (267), Expect = 1.3e-19
Identity = 50/84 (59.52%), Postives = 67/84 (79.76%), Query Frame = 0


Query: 102 KQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHRLVGDRW 161
           K+PRKQ+K+R+++SE              +V+S+EWE ++++EQEEDLI+RMHRLVGD+W
Sbjct: 4   KRPRKQAKTRSTTSE--------------EVSSIEWEFIKMTEQEEDLIYRMHRLVGDKW 63

Query: 162 DLIAGRIPGRTAVEIERFWILKHG 186
           DLIAGRIPGR A EIERFWI++HG
Sbjct: 64  DLIAGRIPGRKAEEIERFWIMRHG 73

[Close]

BLAST of Clc01G02090 vs. NCBI nr
Match: XP_038725413.1 (transcription factor CPC-like [Tripterygium wilfordii])

HSP 1 Score: 103.6 bits (257), Expect = 1.9e-18
Identity = 49/84 (58.33%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 102 KQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHRLVGDRW 161
           K+PRKQ+K+R+++SE              +V+S+EWE V+++EQEEDLI+RM+RLVGD+W
Sbjct: 4   KRPRKQAKTRSTNSE--------------EVSSIEWEFVKMTEQEEDLIYRMYRLVGDKW 63

Query: 162 DLIAGRIPGRTAVEIERFWILKHG 186
           DLIAGRIPGR   EIERFWI++HG
Sbjct: 64  DLIAGRIPGRKPEEIERFWIMRHG 73

[Close]

BLAST of Clc01G02090 vs. NCBI nr
Match: XP_030467108.1 (MYB-like transcription factor ETC3 [Syzygium oleosum])

HSP 1 Score: 102.8 bits (255), Expect = 3.2e-18
Identity = 43/55 (78.18%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 131 KVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKHG 186
           +V+S+EWE + ++EQEEDLIHRMHRLVG+RWDLIAGRIPGR+A EIERFWI+KHG
Sbjct: 22  EVSSIEWEHINMTEQEEDLIHRMHRLVGERWDLIAGRIPGRSAAEIERFWIMKHG 76

[Close]

BLAST of Clc01G02090 vs. ExPASy Swiss-Prot
Match: O22059 (Transcription factor CPC OS=Arabidopsis thaliana OX=3702 GN=CPC PE=1 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.6e-20
Identity = 49/90 (54.44%), Postives = 67/90 (74.44%), Query Frame = 0


Query: 96  EAKKTAKQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHR 155
           +A+K  K+ R+QSK++ S SE              +V+S+EWE V++SE+EEDLI RM++
Sbjct: 6   KAEKMDKRRRRQSKAKASCSE--------------EVSSIEWEAVKMSEEEEDLISRMYK 65

Query: 156 LVGDRWDLIAGRIPGRTAVEIERFWILKHG 186
           LVGDRW+LIAGRIPGRT  EIER+W++KHG
Sbjct: 66  LVGDRWELIAGRIPGRTPEEIERYWLMKHG 81

[Close]

BLAST of Clc01G02090 vs. ExPASy Swiss-Prot
Match: Q9M157 (MYB-like transcription factor ETC3 OS=Arabidopsis thaliana OX=3702 GN=ETC3 PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-18
Identity = 47/86 (54.65%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 99  KTAKQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHRLVG 158
           +  KQP+  S   +SS E               V+SLEWEVV +S++EEDL+ RMH+LVG
Sbjct: 5   RRTKQPKTNSIVTSSSEE---------------VSSLEWEVVNMSQEEEDLVSRMHKLVG 64

Query: 159 DRWDLIAGRIPGRTAVEIERFWILKH 185
           DRW+LIAGRIPGRTA EIERFW++K+
Sbjct: 65  DRWELIAGRIPGRTAGEIERFWVMKN 75

[Close]

BLAST of Clc01G02090 vs. ExPASy Swiss-Prot
Match: Q9LNI5 (MYB-like transcription factor ETC1 OS=Arabidopsis thaliana OX=3702 GN=ETC1 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.3e-17
Identity = 37/54 (68.52%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 131 KVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKH 185
           +V+SLEWE + ++++EEDLI RM++LVG+RWDLIAGRIPGRTA EIERFW++K+
Sbjct: 23  EVSSLEWEEIAMAQEEEDLICRMYKLVGERWDLIAGRIPGRTAEEIERFWVMKN 76

[Close]

BLAST of Clc01G02090 vs. ExPASy Swiss-Prot
Match: Q8GV05 (Transcription factor TRY OS=Arabidopsis thaliana OX=3702 GN=TRY PE=1 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-16
Identity = 36/54 (66.67%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 131 KVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKH 185
           +V+S+EWE + ++EQEEDLI RM+RLVGDRWDLIAGR+PGR   EIER+WI+++
Sbjct: 22  EVSSIEWEFINMTEQEEDLIFRMYRLVGDRWDLIAGRVPGRQPEEIERYWIMRN 75

[Close]

BLAST of Clc01G02090 vs. ExPASy Swiss-Prot
Match: B3H4X8 (MYB-like transcription factor TCL2 OS=Arabidopsis thaliana OX=3702 GN=TCL2 PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 6.9e-16
Identity = 35/54 (64.81%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 131 KVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKH 185
           +V S++WE + ++EQEEDLI RMHRLVGDRWDLIAGR+ GR A +IER+WI+++
Sbjct: 25  EVNSVKWEFINMTEQEEDLIFRMHRLVGDRWDLIAGRVVGREAKDIERYWIMRN 78

[Close]

BLAST of Clc01G02090 vs. ExPASy TrEMBL
Match: A0A6J1CXI2 (transcription factor CPC-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111015344 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.4e-27
Identity = 69/94 (73.40%), Postives = 75/94 (79.79%), Query Frame = 0


Query: 93  MESEAKKTAKQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHR 152
           ME EAKK  KQP+KQSKSRNSSSE              +VTSLEW+++QISEQEEDLI R
Sbjct: 1   MEDEAKKMEKQPQKQSKSRNSSSE--------------EVTSLEWKLIQISEQEEDLICR 60

Query: 153 MHRLVGDRWDLIAGRIPGRTAVEIERFWILKHGS 187
           MH+LVGDRWDLIAGRIPGRTAVEIERFWILKH S
Sbjct: 61  MHKLVGDRWDLIAGRIPGRTAVEIERFWILKHAS 80

[Close]

BLAST of Clc01G02090 vs. ExPASy TrEMBL
Match: A0A4V6A0D9 (Transcription factor TRY-like OS=Populus alba OX=43335 GN=D5086_0000305490 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 3.5e-18
Identity = 50/83 (60.24%), Postives = 61/83 (73.49%), Query Frame = 0


Query: 102 KQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHRLVGDRW 161
           ++ RKQ+K  NS SE              +V+S+EWE + +SEQEEDLIHRM+RLVG+RW
Sbjct: 5   RRRRKQAKINNSESE--------------EVSSIEWEFINMSEQEEDLIHRMYRLVGERW 64

Query: 162 DLIAGRIPGRTAVEIERFWILKH 185
           DLIAGRIPGR A EIERFWI+KH
Sbjct: 65  DLIAGRIPGRKAEEIERFWIMKH 73

[Close]

BLAST of Clc01G02090 vs. ExPASy TrEMBL
Match: A0A061G715 (Homeodomain-like superfamily protein OS=Theobroma cacao OX=3641 GN=TCM_016428 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 7.7e-18
Identity = 47/84 (55.95%), Postives = 65/84 (77.38%), Query Frame = 0


Query: 102 KQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHRLVGDRW 161
           ++P+KQ+K   S+SE              +V+S+EWE ++++EQEEDL++R++RLVGDRW
Sbjct: 3   ERPQKQAKILKSTSE--------------EVSSIEWEFIKMTEQEEDLVYRIYRLVGDRW 62

Query: 162 DLIAGRIPGRTAVEIERFWILKHG 186
           DLIAGRIPGRTA EIERFWI++HG
Sbjct: 63  DLIAGRIPGRTAEEIERFWIMRHG 72

[Close]

BLAST of Clc01G02090 vs. ExPASy TrEMBL
Match: A0A2I4E811 (transcription factor CPC-like OS=Juglans regia OX=51240 GN=LOC108987132 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.0e-17
Identity = 47/84 (55.95%), Postives = 62/84 (73.81%), Query Frame = 0


Query: 102 KQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHRLVGDRW 161
           K+PRKQ+KS  SS+               +V+S+EWE ++++EQEEDLI RM++LVGDRW
Sbjct: 3   KRPRKQAKSTKSSTS-------------EEVSSIEWEFIKMTEQEEDLIFRMYKLVGDRW 62

Query: 162 DLIAGRIPGRTAVEIERFWILKHG 186
           DLIAGR+PGR   EIERFWI++HG
Sbjct: 63  DLIAGRVPGRKPEEIERFWIMRHG 73

[Close]

BLAST of Clc01G02090 vs. ExPASy TrEMBL
Match: A0A654F2G6 (SANT domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=AN1_LOCUS11163 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.3e-17
Identity = 49/90 (54.44%), Postives = 67/90 (74.44%), Query Frame = 0


Query: 96  EAKKTAKQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHR 155
           +A+K  K+ R+QSK++ S SE              +V+S+EWE V++SE+EEDLI RM++
Sbjct: 6   KAEKMDKRRRRQSKAKASCSE--------------EVSSIEWEAVKMSEEEEDLISRMYK 65

Query: 156 LVGDRWDLIAGRIPGRTAVEIERFWILKHG 186
           LVGDRW+LIAGRIPGRT  EIER+W++KHG
Sbjct: 66  LVGDRWELIAGRIPGRTPEEIERYWLMKHG 81

[Close]

BLAST of Clc01G02090 vs. TAIR 10
Match: AT2G46410.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 99.8 bits (247), Expect = 2.5e-21
Identity = 49/90 (54.44%), Postives = 67/90 (74.44%), Query Frame = 0


Query: 96  EAKKTAKQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHR 155
           +A+K  K+ R+QSK++ S SE              +V+S+EWE V++SE+EEDLI RM++
Sbjct: 6   KAEKMDKRRRRQSKAKASCSE--------------EVSSIEWEAVKMSEEEEDLISRMYK 65

Query: 156 LVGDRWDLIAGRIPGRTAVEIERFWILKHG 186
           LVGDRW+LIAGRIPGRT  EIER+W++KHG
Sbjct: 66  LVGDRWELIAGRIPGRTPEEIERYWLMKHG 81

[Close]

BLAST of Clc01G02090 vs. TAIR 10
Match: AT4G01060.1 (CAPRICE-like MYB3 )

HSP 1 Score: 95.9 bits (237), Expect = 3.6e-20
Identity = 49/86 (56.98%), Postives = 62/86 (72.09%), Query Frame = 0


Query: 99  KTAKQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHRLVG 158
           +  KQP K +    SSSEG             +V+SLEWEVV +S++EEDL+ RMH+LVG
Sbjct: 5   RRTKQP-KTNSIVTSSSEGT------------EVSSLEWEVVNMSQEEEDLVSRMHKLVG 64

Query: 159 DRWDLIAGRIPGRTAVEIERFWILKH 185
           DRW+LIAGRIPGRTA EIERFW++K+
Sbjct: 65  DRWELIAGRIPGRTAGEIERFWVMKN 77

[Close]

BLAST of Clc01G02090 vs. TAIR 10
Match: AT4G01060.2 (CAPRICE-like MYB3 )

HSP 1 Score: 95.5 bits (236), Expect = 4.8e-20
Identity = 40/54 (74.07%), Postives = 51/54 (94.44%), Query Frame = 0


Query: 131 KVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKH 185
           +V+SLEWEVV +S++EEDL+ RMH+LVGDRW+LIAGRIPGRTA EIERFW++K+
Sbjct: 21  EVSSLEWEVVNMSQEEEDLVSRMHKLVGDRWELIAGRIPGRTAGEIERFWVMKN 74

[Close]

BLAST of Clc01G02090 vs. TAIR 10
Match: AT4G01060.3 (CAPRICE-like MYB3 )

HSP 1 Score: 94.7 bits (234), Expect = 8.1e-20
Identity = 47/86 (54.65%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 99  KTAKQPRKQSKSRNSSSEGVLIFLVFLPWLLRKVTSLEWEVVQISEQEEDLIHRMHRLVG 158
           +  KQP+  S   +SS E               V+SLEWEVV +S++EEDL+ RMH+LVG
Sbjct: 5   RRTKQPKTNSIVTSSSEE---------------VSSLEWEVVNMSQEEEDLVSRMHKLVG 64

Query: 159 DRWDLIAGRIPGRTAVEIERFWILKH 185
           DRW+LIAGRIPGRTA EIERFW++K+
Sbjct: 65  DRWELIAGRIPGRTAGEIERFWVMKN 75

[Close]

BLAST of Clc01G02090 vs. TAIR 10
Match: AT1G01380.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 89.0 bits (219), Expect = 4.5e-18
Identity = 37/54 (68.52%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 131 KVTSLEWEVVQISEQEEDLIHRMHRLVGDRWDLIAGRIPGRTAVEIERFWILKH 185
           +V+SLEWE + ++++EEDLI RM++LVG+RWDLIAGRIPGRTA EIERFW++K+
Sbjct: 23  EVSSLEWEEIAMAQEEEDLICRMYKLVGERWDLIAGRIPGRTAEEIERFWVMKN 76

The following BLAST results are available for this feature:

BLAST of Clc01G02090 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038874276.1	1.8e-29	76.60	transcription factor CPC-like [Benincasa hispida]	[more]
XP_022146038.1	2.9e-27	73.40	transcription factor CPC-like isoform X2 [Momordica charantia]	[more]
XP_038680402.1	1.3e-19	59.52	transcription factor CPC-like [Tripterygium wilfordii]	[more]
XP_038725413.1	1.9e-18	58.33	transcription factor CPC-like [Tripterygium wilfordii]	[more]
XP_030467108.1	3.2e-18	78.18	MYB-like transcription factor ETC3 [Syzygium oleosum]	[more]

BLAST of Clc01G02090 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22059	3.6e-20	54.44	Transcription factor CPC OS=Arabidopsis thaliana OX=3702 GN=CPC PE=1 SV=1	[more]
Q9M157	1.1e-18	54.65	MYB-like transcription factor ETC3 OS=Arabidopsis thaliana OX=3702 GN=ETC3 PE=2 ...	[more]
Q9LNI5	6.3e-17	68.52	MYB-like transcription factor ETC1 OS=Arabidopsis thaliana OX=3702 GN=ETC1 PE=2 ...	[more]
Q8GV05	1.1e-16	66.67	Transcription factor TRY OS=Arabidopsis thaliana OX=3702 GN=TRY PE=1 SV=1	[more]
B3H4X8	6.9e-16	64.81	MYB-like transcription factor TCL2 OS=Arabidopsis thaliana OX=3702 GN=TCL2 PE=1 ...	[more]

BLAST of Clc01G02090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CXI2	1.4e-27	73.40	transcription factor CPC-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A4V6A0D9	3.5e-18	60.24	Transcription factor TRY-like OS=Populus alba OX=43335 GN=D5086_0000305490 PE=4 ...	[more]
A0A061G715	7.7e-18	55.95	Homeodomain-like superfamily protein OS=Theobroma cacao OX=3641 GN=TCM_016428 PE...	[more]
A0A2I4E811	1.0e-17	55.95	transcription factor CPC-like OS=Juglans regia OX=51240 GN=LOC108987132 PE=4 SV=...	[more]
A0A654F2G6	1.3e-17	54.44	SANT domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=AN1_LOCUS11163...	[more]

BLAST of Clc01G02090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46410.1	2.5e-21	54.44	Homeodomain-like superfamily protein	[more]
AT4G01060.1	3.6e-20	56.98	CAPRICE-like MYB3	[more]
AT4G01060.2	4.8e-20	74.07	CAPRICE-like MYB3	[more]
AT4G01060.3	8.1e-20	54.65	CAPRICE-like MYB3	[more]
AT1G01380.1	4.5e-18	68.52	Homeodomain-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 138..186 e-value: 1.9E-5 score: 34.1
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 143..180 e-value: 2.09589E-6 score: 41.0218
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 143..180 e-value: 8.8E-7 score: 29.0
None	No IPR available	GENE3D	1.10.10.60		coord: 143..183 e-value: 1.5E-8 score: 36.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..111
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..103
None	No IPR available	PANTHER	PTHR47998	TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1	coord: 114..185
None	No IPR available	PANTHER	PTHR47998:SF13	MYB-LIKE TRANSCRIPTION FACTOR ETC2-RELATED	coord: 114..185
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 143..181

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc01G02090.1	Clc01G02090.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009913	epidermal cell differentiation
biological_process	GO:0010063	positive regulation of trichoblast fate specification
biological_process	GO:0010376	stomatal complex formation
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0000976	transcription cis-regulatory region binding