Clc01G01730 (gene) Watermelon (cordophanus) v2

Overview
NameClc01G01730
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr01: 1578339 .. 1583573 (+)
RNA-Seq ExpressionClc01G01730
SyntenyClc01G01730
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACGGCGGAGGCGGACTGGGACGACAAGACAACGCTGTGATTGTTTGGCGGCGGAGCGGAGAATCTCCGGTGTGATAACTTTTTGGGATGTTTCTTGCAGTAGAGACGCCATTGTCGATCACGACGGTCTGAGCAACCACGAAGAGTTTATCGAATTTGTGGGTTTTAGTTTTAGGGCTTTAGGTGGGATTTTCGTATGGATGGCCTTAAAGTTAAAAATACAAATAAAAAATGGTCTTCCATTCATTTCAACTATACTGAAAATACCCATTTAACCTAAAAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTCACTCTAGTTTCTTTCTTTAGCTTCTAGATTCTCACTATAACTTCTCGATTCTTGTTCTTTCTTCTAGTTTCTTATAAGACACAACTATAATTTTTTTCTTCAATTTTTTCTTTTGTTTGGATTCTTGCTCTAGCTTTTCGCTTATCACTTTTTGCTCTAACTTCTCAATTATCGCTCCTTCCTCTAGTTTCTCATCAAACACAACTACAATTTTTTACATTTGTTCGAATTCGCGCACTAGCTTCTTAATTCTCGCTCTTGCTTCTCGATTCTCACTCTAGTTCCTCGTCAGACACAACTACAATTTTTTTTTCGTAAAAAAACTGTAGAATGAAGAAGGGAAAAAAAAACTACAAAACGAATAAGAAAAAAAACACTTTAAGAATGAAGAAGAAGAAGATGAAGAAGACAACAATGGATATACAGCAAAAATAGTAGAATAATAAGAAGTGGAAGAAGAATGCAAAAGAAAAGAAGATGAATAGAAAAATAATAATAATAAAATAAAACGTAGATTTTTTCCAAATCGAACAACTGCAAGACGAGAAATAGAAGGAAGAAATACATTTGAGTTTAAAATGATAATTTTTTATATCATTGATATAAGCAAAATGCCAAAAAATTTATTCAGCTTTAAATTTGGGGGTAGATTTTGATTTGGGCCCAATAAAGGGGGGTAGATTTTGATTTGGGCCCAATAAAAAGGCCCTCAGTGCAATTCTTCCCTTTATGGTCCAATCAACAAGGTTTTCTTTCGAGAACAATTAATAATTACAAGGTAACTTTTATGAAAAGAATTATCCTTTGATTAGAAATTTCTTAGGAAGTTTGAAGAACATTGATACTCCAAAATTGTCTAAATTTTCTTTTTAGGTCAGTATAGCATCATTTGTATATCTCAATGCATGTTAAGAATGTTAAAAATTTATACTCTGAAAGTATTTTTTAAATATTTATAAAAATTCAAGAGTGATATTGTTATTTTTAAAAATATATGAGTATTTTTTAGACAGATGACAAAGTTCAAAAGCATATTTTCTGTAGTTTAAGAAACAAAAATATGCACAACTTACAAATACTTATTGGTTTGTTTTCGTTTTTTTATTTGTAAAATTAAGCTTACAAATACTTTTAAGTTTTTAATAAAATTCTCAAAATTCATGCTAAATTTTAAAACTATAAAATAATGATTTTTTTTTTTTCTCTTTTTCTTTTGAGAAATGGATCTATTTTCAAAGTTAGTTTTTTTTCTCTTTCAAAACTTAGCATAGATTTCGAAAATATAGTGAGGGTAAATAATAAAATAAATAAATTTATAGGTGAAATTAGTGTTTATAAGCTTAATCTTCAAAAATTAAATGATTATCAAACAAAAATGTAATTTATTTTTTTTTTTTTTTTGAAAATTGACTAACAATATTCAAATATAGCACATATAAGAATACTATTAAAGAAATTGTAAAAAAGCAAGTAGAATTAAAAAAAAAAAAAATCAAAATTTATCAAATGAGTGGTTTTTTCAACTCTGGTGAGTAAAAAATTAACCTTTCTACTTCTCTAATTTAATAATAAAATTTTAGTAAATAGTAACTTACTGAAGTTTTTATGTTTTAAAGCTTGGTATAATTTTTATCATGAAAAATTCTATCATAACGAAGTCTCAACTTTTATTTAGTAACTGAATGAAGAAAGTTGGTTCATTAATTTAGAGATGTACATGTGCAAACAATCTCACGGGATCTAGATAATATTTTTCGCAATATGAACTAGCATTACACATTTTAAAGCACACGACCTATTTGGAGCAAGTTATTATATGCTCCAAACAATGACAAAGACACTTCTCTTTTACTCAATTACCAAAAAAATATATGGTATCAAATGGCATTGGCACAGCTTGAAAAACAAAAAGACGAAGAAGATGATGAAGGAAAGCAATGGAATGAATGAAAAAACAATAGATTGTCTCTTTTACACACGTAGCAACATTTATAGTACTACTTAATAGACAACAACCAAATATATAGTAACATTTTTTAAAAATTGCAAATATAGCAAAGTCTATCCATGATAGATTTCTATAACTGATAGACTCTCATGGTCTAGTCTATCACTGATAGACTTGTTAATATTTTGAATTTGATTGTTATACTTGTCATTGTCCATAATATTCAATACATCATTAGATAATTTATTATTATTAATTATAATATGTGGGTTGAGGGAATGGAACCTCTCAGTTTGAGTTGGTAGCAGAATTCACATGAAAATTGAATTATGCTCATTTTAAATAGATGATGTATTATTTTAATCTTGTCCCACATAAAGCTTAAATATTTCTTTTATGGCAAGAACGAATAAGGTAATATGGAAAATATTTTACAAAAATTAACTACAATAAAACAATAACAATAGAAAAAGAAAACAAAAACATGTTTTCTTACGAAGTTTTTATTTCCATAAAATTGAGGCATTTTTTAACATTGGTTTAGAGCTAAAACGCAGTCAAGTTGCACCGTATTGGTTCCCTCCGTCGCCATTTGCTTGAAATCGCCGTCACTTTCACGAAGATCTTCCTCAACCATCTGCGCAGACTGATCCCACAGAACCCCACCAACAAAACCGACCCATCGGCGATCGATATGGGTGGAGCCCAGGCCATCAGAAGGATTCCTCGCATCAAGTTCCCCAAACGACATCCCAACCCCTCTGGTCCGCCTCCCGCTTCCCTTTTTCCTCATTACTCTTCTTTATTTTGATCCATGATCTTCCTCAAACTAACCAAATCTTCAATACCCATATGAAAACCTTCGTTTGTTTGAGTGTTTTCCCCCTTTTTTCCCGCTGGTGTTTGTGTTCGATCATCTCCCTGTTCTTTCTTTCGTTGATCTTTGACTCGTATTTATGCCTTTGATTCTGTTCTTGATCGCTTAGAGTTGGGGTTTTCTCTCTAGTACGGTTAGATGCTTAGCCTGGTTTAGCTTTTTAATGAAGATTCTGGTGCATTAATGTGAACTGATGTAGGGACTAAAGATTTTTCTTCTTTTCAGTTTATTGGTTTTCTCTTATCTTTGGTTTTTCCACATTTGATTAGCATTTTGTTAACCTTGATTTTGAAATCTAATGACCCAGATTAGTAACCCAAGCTTCAGAGAGTTTGGAATGAAACATGATTTAAAAGTGGGGAGGAAAGGATTTTGTGAGAATTTCAAGTTGACTCAATAGATTTTGTTTATTTGAAGAGGTTTATATGATAGGGAAGTTGATTTTTATGCCTTTTTCTGATTCTATTATAGAAGCTTTATTATCTAAGGACTACTCTTGGAATGCTTAGAATTGAGGCTCAAGTAGTACTACCTATTTTTGTTTGGCCTAAATGCATACTTTTATTGGTACCTTGTGAAATTTAGAAATCCTTCTATACATATTTGTATGCCTATTTCAGAATGTCTATTGCTATTCAATGTAATCTATTTGACAAGTCTGTTTACCTAACAGTACCATCTCTTTGAAAAGAAAGAAAAAGGAGCTTGGCCATGTATAGAATTGTTTATTTGTTGCTGACTTGATTTAATAGACACCAACCTGATGCTGTTAGACGATCGTTGATGAGTTGAAGCGTCGTATAATATATCGATTGATGAATTCTGCCTTTGTGATGTGTTTTCTAAAGTTATCTGTCAGTCATTTTATAGAAGTAGTCAATACTGAAGAAAGTTTTACAGGTTCCACTTCCAAGACTCCATCAACCAGTCGGGGGGATGATCAAATTTTCTTCTCATCTTCAGAACAAACTGCCTCCAAAACTGTTGGAGGAAAAGCCTCCCTTCAGCCTAAAAGGACACCCTTATCCAATGAGGAGATTGAGGCTATTTTGGTAATGGAACCTATTCCTATTTGGTGGTTGCTTGCTTTAATAATTGCTGATCGATCTGTTGTTTCTTATAATGCAATGTGCTTCAAGCATTCAATTTGGACTCTTCTTATTGCTAGAGAAGCAAACAAATCGCCATGAGATACAAACCTTAAACCTTAGAAAATGTCATCTGGTCTTATTATGTGCTTTAATTTAAGTAACATTGTCAAGGTAATGACTAGCGAGTTGAAAGCACACATCATTCGTTTGTGATTAGAAAGTTGTGTTTAGTTCGTTCATGGAACGAGGAGTTGATGCCTTTTTTGTCGAGTAGTATACATTTCACTTGGATGTGGAAACGTTAACTTCTAGCATGGCAATGTACATTCTAGCACCTAAGAATCACAAACACTTTAATTTGGTTAGCCACATCCATGTCTAGCACCCTTATAACCCCTGAACACTCGAACCCTTGTTGGACATGTATTGGATACTTCTTAGTACAATAGATGTGTTAGACGCTAGTTGTACAAATTCAAAATAGGTCCAACATTTGTTAGACATGCATCAAGCACTTGTTAAGTAGAAATATCATATGACAAATAATAAATTTTGAGAGTGAAATACATCAAACTAACGTTTAAGCGTATAAATGCATAAACTCATTAACTTTGAATTTCCTAATATAAAAATGGCATATATTTTAATAGATATATCTTGTCATGTCCATGTTGTTGGTTTTGAAAAAAGATGACGTGTTGCCGTGTTAATGTTGTGTCATATTCGTGCTTCTTAGCTTAGTACCAAGCTTGTATGCTCCGCCTCCACCCATGAAATCATTTCAAGTTTTGGTTTCTAGAATGCTCTTCATTCTATGAATCAATTATTCCTTGATTTGCTTTTGCTGGGATATTTTTACTCACAATTCTACTACTTATTTGCAGCTTGGTGGCTGCATCTGATGAGAGCTTTGAGATTGAATAATACTATGGTTGTGGTCATTCTTTTCTACTATTTCATGTTATAGTTACAATTTTTGAACTTGAATCATAGCATGTCATAA

mRNA sequence

ATGGCACGGCGGAGGCGGACTGGGACGACAAGACAACGCTGTGATTGTTTGGCGGCGGAGCGGAGAATCTCCGGTGTGATAACTTTTTGGGATGTTTCTTGCAGTAGAGACGCCATTGTCGATCACGACGTCAAGTTGCACCGTATTGGTTCCCTCCGTCGCCATTTGCTTGAAATCGCCGTCACTTTCACGAAGATCTTCCTCAACCATCTGCGCAGACTGATCCCACAGAACCCCACCAACAAAACCGACCCATCGGCGATCGATATGGGTGGAGCCCAGGCCATCAGAAGGATTCCTCGCATCAAGTTCCCCAAACGACATCCCAACCCCTCTGAAGTAGTCAATACTGAAGAAAGTTTTACAGGTTCCACTTCCAAGACTCCATCAACCAGTCGGGGGGATGATCAAATTTTCTTCTCATCTTCAGAACAAACTGCCTCCAAAACTGTTGGAGGAAAAGCCTCCCTTCAGCCTAAAAGGACACCCTTATCCAATGAGGAGATTGAGGCTATTTTGTTACAATTTTTGAACTTGAATCATAGCATGTCATAA

Coding sequence (CDS)

ATGGCACGGCGGAGGCGGACTGGGACGACAAGACAACGCTGTGATTGTTTGGCGGCGGAGCGGAGAATCTCCGGTGTGATAACTTTTTGGGATGTTTCTTGCAGTAGAGACGCCATTGTCGATCACGACGTCAAGTTGCACCGTATTGGTTCCCTCCGTCGCCATTTGCTTGAAATCGCCGTCACTTTCACGAAGATCTTCCTCAACCATCTGCGCAGACTGATCCCACAGAACCCCACCAACAAAACCGACCCATCGGCGATCGATATGGGTGGAGCCCAGGCCATCAGAAGGATTCCTCGCATCAAGTTCCCCAAACGACATCCCAACCCCTCTGAAGTAGTCAATACTGAAGAAAGTTTTACAGGTTCCACTTCCAAGACTCCATCAACCAGTCGGGGGGATGATCAAATTTTCTTCTCATCTTCAGAACAAACTGCCTCCAAAACTGTTGGAGGAAAAGCCTCCCTTCAGCCTAAAAGGACACCCTTATCCAATGAGGAGATTGAGGCTATTTTGTTACAATTTTTGAACTTGAATCATAGCATGTCATAA

Protein sequence

MARRRRTGTTRQRCDCLAAERRISGVITFWDVSCSRDAIVDHDVKLHRIGSLRRHLLEIAVTFTKIFLNHLRRLIPQNPTNKTDPSAIDMGGAQAIRRIPRIKFPKRHPNPSEVVNTEESFTGSTSKTPSTSRGDDQIFFSSSEQTASKTVGGKASLQPKRTPLSNEEIEAILLQFLNLNHSMS
Homology
[Close]
BLAST of Clc01G01730 vs. NCBI nr
Match: XP_038875405.1 (uncharacterized protein LOC120067868 [Benincasa hispida])

HSP 1 Score: 126.3 bits (316), Expect = 2.7e-25
Identity = 70/85 (82.35%), Postives = 72/85 (84.71%), Query Frame = 0 

Query: 90  MGGAQAIRRIPRIKFPKRHPNPSEVVNTEESFTGSTSKTPSTSRGDDQIFFSSSEQTASK 149
           MGGAQAI+RIPRIKFPKRHPNPS          GSTSKTPS+S  DDQIFFSS EQTASK
Sbjct: 1   MGGAQAIKRIPRIKFPKRHPNPS----------GSTSKTPSSSGVDDQIFFSSLEQTASK 60

Query: 150 TVGGKASLQPKRTPLSNEEIEAILL 175
           TVGGKASLQPKRTPLSNEEIEAILL
Sbjct: 61  TVGGKASLQPKRTPLSNEEIEAILL 75

[Close]
BLAST of Clc01G01730 vs. NCBI nr
Match: XP_008437426.1 (PREDICTED: uncharacterized protein LOC103482844 [Cucumis melo])

HSP 1 Score: 115.5 bits (288), Expect = 4.7e-22
Identity = 64/85 (75.29%), Postives = 69/85 (81.18%), Query Frame = 0 

Query: 90  MGGAQAIRRIPRIKFPKRHPNPSEVVNTEESFTGSTSKTPSTSRGDDQIFFSSSEQTASK 149
           MGGAQAI+RIPRIKFPKRHP+ S          GSTSKTPS++ GDD IFFSS E+ ASK
Sbjct: 1   MGGAQAIKRIPRIKFPKRHPSSS----------GSTSKTPSSNGGDDHIFFSSLEKDASK 60

Query: 150 TVGGKASLQPKRTPLSNEEIEAILL 175
           TVGGKASLQPKR PLSNEEIEAILL
Sbjct: 61  TVGGKASLQPKRIPLSNEEIEAILL 75

[Close]
BLAST of Clc01G01730 vs. NCBI nr
Match: XP_004143853.1 (uncharacterized protein LOC101205349 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 3.1e-21
Identity = 63/85 (74.12%), Postives = 68/85 (80.00%), Query Frame = 0 

Query: 90  MGGAQAIRRIPRIKFPKRHPNPSEVVNTEESFTGSTSKTPSTSRGDDQIFFSSSEQTASK 149
           MGGAQAI+RIPRIKFPKRH + S          GSTSKTPS+  GDD +FFSS E+ ASK
Sbjct: 1   MGGAQAIKRIPRIKFPKRHLSSS----------GSTSKTPSSHGGDDHVFFSSLEKDASK 60

Query: 150 TVGGKASLQPKRTPLSNEEIEAILL 175
           TVGGKASLQPKRTPLSNEEIEAILL
Sbjct: 61  TVGGKASLQPKRTPLSNEEIEAILL 75

[Close]
BLAST of Clc01G01730 vs. NCBI nr
Match: XP_023534508.1 (uncharacterized protein LOC111796047 [Cucurbita pepo subsp. pepo] >KAG6605594.1 hypothetical protein SDJN03_02911, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 109.0 bits (271), Expect = 4.4e-20
Identity = 58/85 (68.24%), Postives = 67/85 (78.82%), Query Frame = 0 

Query: 90  MGGAQAIRRIPRIKFPKRHPNPSEVVNTEESFTGSTSKTPSTSRGDDQIFFSSSEQTASK 149
           MGGAQA++RIPRIKFPKRHPNPS          GSTS+TP++   DDQ+ F S  + ASK
Sbjct: 1   MGGAQALKRIPRIKFPKRHPNPS----------GSTSQTPTSIGVDDQVLFLSLNEKASK 60

Query: 150 TVGGKASLQPKRTPLSNEEIEAILL 175
           T+GGKASLQPKRTP+SNEEIEAILL
Sbjct: 61  TIGGKASLQPKRTPMSNEEIEAILL 75

[Close]
BLAST of Clc01G01730 vs. NCBI nr
Match: KAG7035504.1 (hypothetical protein SDJN02_02300 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 108.2 bits (269), Expect = 7.5e-20
Identity = 57/94 (60.64%), Postives = 72/94 (76.60%), Query Frame = 0 

Query: 90  MGGAQAIRRIPRIKFPKRHPNPSEVVNTEESFTGSTSKTPSTSRGDDQIFFSSSEQTASK 149
           MGGAQA++RIPRIKFPKRHPNPS          GSTS+TP++   DDQ+ F S  + ASK
Sbjct: 1   MGGAQALKRIPRIKFPKRHPNPS----------GSTSQTPTSIGVDDQVLFLSLNEKASK 60

Query: 150 TVGGKASLQPKRTPLSNEEIEAILLQFLNLNHSM 184
           T+GGKASLQPKRTP+SNEEIEAIL+ +++ +  +
Sbjct: 61  TIGGKASLQPKRTPMSNEEIEAILVTWVDASDEL 84

[Close]
BLAST of Clc01G01730 vs. ExPASy TrEMBL
Match: A0A1S3AUJ6 (uncharacterized protein LOC103482844 OS=Cucumis melo OX=3656 GN=LOC103482844 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.3e-22
Identity = 64/85 (75.29%), Postives = 69/85 (81.18%), Query Frame = 0 

Query: 90  MGGAQAIRRIPRIKFPKRHPNPSEVVNTEESFTGSTSKTPSTSRGDDQIFFSSSEQTASK 149
           MGGAQAI+RIPRIKFPKRHP+ S          GSTSKTPS++ GDD IFFSS E+ ASK
Sbjct: 1   MGGAQAIKRIPRIKFPKRHPSSS----------GSTSKTPSSNGGDDHIFFSSLEKDASK 60

Query: 150 TVGGKASLQPKRTPLSNEEIEAILL 175
           TVGGKASLQPKR PLSNEEIEAILL
Sbjct: 61  TVGGKASLQPKRIPLSNEEIEAILL 75

[Close]
BLAST of Clc01G01730 vs. ExPASy TrEMBL
Match: A0A0A0KMD8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G148700 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.5e-21
Identity = 63/85 (74.12%), Postives = 68/85 (80.00%), Query Frame = 0 

Query: 90  MGGAQAIRRIPRIKFPKRHPNPSEVVNTEESFTGSTSKTPSTSRGDDQIFFSSSEQTASK 149
           MGGAQAI+RIPRIKFPKRH + S          GSTSKTPS+  GDD +FFSS E+ ASK
Sbjct: 1   MGGAQAIKRIPRIKFPKRHLSSS----------GSTSKTPSSHGGDDHVFFSSLEKDASK 60

Query: 150 TVGGKASLQPKRTPLSNEEIEAILL 175
           TVGGKASLQPKRTPLSNEEIEAILL
Sbjct: 61  TVGGKASLQPKRTPLSNEEIEAILL 75

[Close]
BLAST of Clc01G01730 vs. ExPASy TrEMBL
Match: A0A6J1K8D8 (uncharacterized protein LOC111491585 OS=Cucurbita maxima OX=3661 GN=LOC111491585 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.4e-19
Identity = 57/85 (67.06%), Postives = 66/85 (77.65%), Query Frame = 0 

Query: 90  MGGAQAIRRIPRIKFPKRHPNPSEVVNTEESFTGSTSKTPSTSRGDDQIFFSSSEQTASK 149
           MG AQA++RIPRIKFPKRHPNPS          GSTS+TP++   DDQ+ F S  + ASK
Sbjct: 1   MGVAQALKRIPRIKFPKRHPNPS----------GSTSQTPTSIGVDDQVLFLSLNEKASK 60

Query: 150 TVGGKASLQPKRTPLSNEEIEAILL 175
           T+GGKASLQPKRTP+SNEEIEAILL
Sbjct: 61  TIGGKASLQPKRTPMSNEEIEAILL 75

[Close]
BLAST of Clc01G01730 vs. ExPASy TrEMBL
Match: A0A6J1H0Q6 (uncharacterized protein LOC111459363 OS=Cucurbita moschata OX=3662 GN=LOC111459363 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.4e-19
Identity = 57/85 (67.06%), Postives = 66/85 (77.65%), Query Frame = 0 

Query: 90  MGGAQAIRRIPRIKFPKRHPNPSEVVNTEESFTGSTSKTPSTSRGDDQIFFSSSEQTASK 149
           MG AQA++RIPRIKFPKRHPNPS          GSTS+TP++   DDQ+ F S  + ASK
Sbjct: 1   MGVAQALKRIPRIKFPKRHPNPS----------GSTSQTPTSIGVDDQVLFLSLNEKASK 60

Query: 150 TVGGKASLQPKRTPLSNEEIEAILL 175
           T+GGKASLQPKRTP+SNEEIEAILL
Sbjct: 61  TIGGKASLQPKRTPMSNEEIEAILL 75

[Close]
BLAST of Clc01G01730 vs. ExPASy TrEMBL
Match: A0A6J1DS43 (uncharacterized protein LOC111023342 OS=Momordica charantia OX=3673 GN=LOC111023342 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.2e-18
Identity = 58/85 (68.24%), Postives = 64/85 (75.29%), Query Frame = 0 

Query: 90  MGGAQAIRRIPRIKFPKRHPNPSEVVNTEESFTGSTSKTPSTSRGDDQIFFSSSEQTASK 149
           MGGAQAI+RIPRIKFPKRHPNPS          GSTS+TPS    DDQ+ FS+      K
Sbjct: 1   MGGAQAIKRIPRIKFPKRHPNPS----------GSTSQTPSNLGVDDQVIFSTG--NVLK 60

Query: 150 TVGGKASLQPKRTPLSNEEIEAILL 175
           TVGGKASLQPKRTP+SNEEIEA+LL
Sbjct: 61  TVGGKASLQPKRTPMSNEEIEAVLL 73

[Close]
BLAST of Clc01G01730 vs. TAIR 10
Match: AT4G23885.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24165.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 65.5 bits (158), Expect = 5.2e-11
Identity = 40/85 (47.06%), Postives = 48/85 (56.47%), Query Frame = 0 

Query: 90  MGGAQAIRRIPRIKFPKRHPNPSEVVNTEESFTGSTSKTPSTSRGDDQIFFSSSEQTASK 149
           M     ++RIPRIKFP+RH NP            S S+  S    +    F S+     K
Sbjct: 1   MNVVHGLKRIPRIKFPQRHINP------------SASEGKSQVANEADTLFFSNLNNIQK 60

Query: 150 TVGGKASLQPKRTPLSNEEIEAILL 175
           T GGKAS QPKRTP+SNEE+EAILL
Sbjct: 61  TTGGKASSQPKRTPVSNEEMEAILL 73

[Close]
BLAST of Clc01G01730 vs. TAIR 10
Match: AT5G24165.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23885.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 52.8 bits (125), Expect = 3.5e-07
Identity = 38/81 (46.91%), Postives = 46/81 (56.79%), Query Frame = 0 

Query: 96  IRRIPRIKFPKRHPNPSEVVNTEESFTGSTSKTPSTSRGDDQIFFSSSEQTASKTV--GG 155
           +RRIPRIKFP+RH   S          GS     S S     +  SS    A K    GG
Sbjct: 1   MRRIPRIKFPQRHSISS----------GSGPAPGSVSGVKKNVTASSDVPAAPKNTADGG 60

Query: 156 KASLQPKRTPLSNEEIEAILL 175
           KASLQPKRTP+S++EIE+I+L
Sbjct: 61  KASLQPKRTPVSDKEIESIML 71

The following BLAST results are available for this feature:
BLAST of Clc01G01730 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038875405.12.7e-2582.35uncharacterized protein LOC120067868 [Benincasa hispida][more]
XP_008437426.14.7e-2275.29PREDICTED: uncharacterized protein LOC103482844 [Cucumis melo][more]
XP_004143853.13.1e-2174.12uncharacterized protein LOC101205349 [Cucumis sativus][more]
XP_023534508.14.4e-2068.24uncharacterized protein LOC111796047 [Cucurbita pepo subsp. pepo] >KAG6605594.1 ... [more]
KAG7035504.17.5e-2060.64hypothetical protein SDJN02_02300 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Clc01G01730 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc01G01730 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3AUJ62.3e-2275.29uncharacterized protein LOC103482844 OS=Cucumis melo OX=3656 GN=LOC103482844 PE=... [more]
A0A0A0KMD81.5e-2174.12Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G148700 PE=4 SV=1[more]
A0A6J1K8D82.4e-1967.06uncharacterized protein LOC111491585 OS=Cucurbita maxima OX=3661 GN=LOC111491585... [more]
A0A6J1H0Q62.4e-1967.06uncharacterized protein LOC111459363 OS=Cucurbita moschata OX=3662 GN=LOC1114593... [more]
A0A6J1DS431.2e-1868.24uncharacterized protein LOC111023342 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
BLAST of Clc01G01730 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G23885.15.2e-1147.06unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G24165.13.5e-0746.91unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 114..137
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 143..162
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 104..137
NoneNo IPR availablePANTHERPTHR35751:SF3OS06G0530200 PROTEINcoord: 91..176
NoneNo IPR availablePANTHERPTHR35751FAMILY NOT NAMEDcoord: 91..176

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc01G01730.2Clc01G01730.2mRNA