Clc01G01460 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GAAACTTCTAGGAATTTGAAATCCTCAAACAAGGAAGGAATTCCTTATAAAATCCCCTTCTCATTCCTCAACTCTCACCAAACTCCTCACCAACAAACTCTCAATCCAAACAACAATTCAAGAAATTCAACCAATTTTCAGAAGAAGATGAATTCCATGTTCAGTTTCTTCGATGCCTTCGCCGCCGAATTGCTCCTCGGCAAATTCGTTAGGGATTCTTCCTCTGTTCCTTCCTTCACTCCTAACAACGGCGGCTCCGCCTCTTCCGCCGCTTCCGCCTCCCCGAAGTCGCTGCCGAACAAGAAAGAAGAAGCTAATTCCAAGAATTCGTCGATGAAGCCGAGATTTGCTCTGGAGTTAGATGGCCTCAATTGCTTCGAGACTCTCGTCCCGAATTGAGGTCTCTTTCGAAATCTAACTCATAATATTCTTCTCATTCTTTCAATTTTAGGGTTTCAAAATTTAGGTCATACGAGAATCGAGGATTGGGAATTTTAGTATATATGAATACAAAGTGTTCTTCCCTTTCTGTTCTTCTGTTCATGGAATTAGATAATTGATTCTGTTCTTTGGTTTTATAATTTGTTATGAAATTTGATACTATTCGTTTGATTCATTACTCTTCTTCTTCCTTCATGGTTTTCTTGTTCGTTACTTGTTTATATGTTCAAGATTTTACAATATTCTGAATCTCGATGGGCAATAGAATTGAGAATTATTTTATTTTCAAATTTGCAATTATATTCATGGGTACTTTGATGGGAATTGTCGGGACAACGAAAAGCATATTATTATAAGTTGGGAACATAAAAGGAAAGAAGCAGTGGCATGGCTCACAAATTAAGGAAAATAAATAATCAAACAAAATATAAAATATTTTCTAAATTCAAAACAGATTAAAATTAAATAAAATCAAGAAAAAGAAGGAGATTGCTTAACTTGGACTTGGAGACACATATGTTATCATTTTACACGTGTGATTGAACTGGAAGAAAATAATTAATAAAATTAGCAAGTGAGCTTTTATTTGTTACCAAAATTACAAAAAAATCAAGTTATCCAAATGAGCATTAGGTTTTTCCTTAAATAACAATTTTGTTTGACTTACCTCAAATTTATAGTTTCATCCTTTGAATTTATATTCAATTTTCAATTAAAAAGATCATTAAAAATAAGGTTGTTTGCCTATTTTGATAATTATTTTATTTTTAAAAATTGTGCTAAGGATTAAATAAAATATTAATCTAATTACCATTTTAAAGGTCAAAATTATTGAACTAAAAGAAACAATGTAAAGTGTCTACGAATGAACCTCAAAACTTATTCCCCATACTAAACACATATTCCACAGTGGTAGTGATTTTCAAGTGGTTAAAAATAATTTTTTTCTTATATTTAAAATCATTCAAAAAAAGAAAGAAAAAAAAACCTTTAATCATTCCATATCAATTCAGTACTTGATCGTTCACTTTTAAACACGGTTTTTATAAATCAAAACTTATTTCGAAGGATTAAAAATATTTGTCGAAGTAATTTTATAGACGACCAAAAGTGATTTAAACTATTCAAGATTTGTTTTAAAAGCCCAAATCAAGGCCCAATTGTGTCGAACTTAGGCTCAATTTCACGTTAATTAATCATTAAGCAGACTTCATAATAGCCCACCCCAGAAAAATAACAAAACACGTACACTGCACGTGTGTGTGTGTTTTTTTTTTCTTTTCGTAATACCTATTGTGTGACTTTTTCGTAATATTTATTTTGTCCTTAGTTTGTATGATCGAAATATTAATTATAGTGTAGTGGGGAGCTTGTATAATAATCAAGAAATAAATAAGTGTAATTGAGAAAATTGTTGGATGGCAAAATCAGCATCATCTCGTGAATTTCGACCTTTTTTTAATTCAAATTTATTTTTAATATTAAAAATAGATTTTCATAACTAATTTTTCAATTAATTCAAAATAATCCAATTTATTTCTTACCGCATTTTTTAGTTTAGATTATTTTTAGAAAAATTATAATATATAATAAATATTAAATTATTTACAATTATAGAAAAATTTCATTGTCTATCGGCGATTGATTATAACGATAGATCACTTTTTTCATTTCAGTGATAGAAGTTTGACTCGCTCTATTAATCAAGCGATAAAAGTCTATCCGGTCTATTACCAATAGATAGTAAAACTCTTTCTATGTTTGTAAATAATTTAACTCATTTTTGCTATATTTGAAAACAACTCTTATTATTATTATCAAATTACATTTTATCCTAGTAATCAACAATATTCTAAATTTTTTGTCAATAATATTTCTTATGGTGAGATCACATCTTAATGGTTTTCATTATTTTATACATACATATATATATTTTTATCAAATTTCTTACATATTTTTCATATTTCATTTTAACCGTTTATATCACGTGTATATTTTTATATTATTTTTTTTTAGAGTTTTTGAGATAGATTCACAATCTCAACAAAATTGGTTGTTATCTACGACTAAATAAGTATTGTATTTCAGCTTATGATATTTTCTTTTGGTTTTCTTCTTAAGTTATTGCTTTTGGTTTTCTTCTTAATGTATTGTTTTTGTTATGACTTTACAACGAATTAGACTCTTGTTTAATGGTAGGTGGGGTGAAAAGTCACATTATCATGATTTTCGAGTTGTTGAGGCATTCTATCAGATTCAACCTTTTAACAATTTGTTGAATATATCTAAGGTGAGTTTTTTTCCTCTGGCAATCTATGTATATCTTGATTGACAATGTATAGGGATGGTTCTAGTAGTTCGAATATGATTAAGATTGTTGAAGGCAAGGATATTTCATGATTGATGACAGTTTTATCTAACTCCCCATAATGATTTATGTGTAGTGATTGACCACACCTCTTCTAGTAATTCGATTTCTAGAAATATAATGTATTTCAATAATGAGTTAGTAGGAACAAATCCTTCTCTCCAACCTTTTGAGCCTATTTATGAAATTATTGATTTTCAAAATTTTGAGTCTTGTCAATCTGGTATTTTCATTAAAGAAAGTCTGTATTAGTAAATGGCTAGGATGATTTACTTTTGCCCTTTTCTACCCAAAGATAGTTTGTGTAAACCCTAATTTATTTTGATTTGAAATATTTGTTTTAGTTTTGAATTAATTTCTTTTAATTGAAACTTTGTTTAACGTGATGATAATTACTTATGAGTAGATAAGATATTTGTCATAATACATTGCACAACATGATAATTATGTGGGTAGAGTGTATTTGTAATTTTTGGAATGATTTTGAAACCTTCTACCTCCTTATTAAAACGTTACCTATGGGGTTTATTGGGGTAATTTTGGCAATTTCTACTTATTATTTTAATCATTTG GAAACTTCTAGGAATTTGAAATCCTCAAACAAGGAAGGAATTCCTTATAAAATCCCCTTCTCATTCCTCAACTCTCACCAAACTCCTCACCAACAAACTCTCAATCCAAACAACAATTCAAGAAATTCAACCAATTTTCAGAAGAAGATGAATTCCATGTTCAGTTTCTTCGATGCCTTCGCCGCCGAATTGCTCCTCGGCAAATTCGTTAGGGATTCTTCCTCTGTTCCTTCCTTCACTCCTAACAACGGCGGCTCCGCCTCTTCCGCCGCTTCCGCCTCCCCGAAGTCGCTGCCGAACAAGAAAGAAGAAGCTAATTCCAAGAATTCGTCGATGAAGCCGAGATTTGCTCTGGAGTTAGATGGCCTCAATTGCTTCGAGACTCTCGTCCCGAATTGAGGTGGGGTGAAAAGTCACATTATCATGATTTTCGAGTTGTTGAGGCATTCTATCAGATTCAACCTTTTAACAATTTGTTGAATATATCTAAGGTGAGTTTTTTTCCTCTGGCAATCTATGTATATCTTGATTGACAATGTATAGGGATGGTTCTAGTAGTTCGAATATGATTAAGATTGTTGAAGGCAAGGATATTTCATGATTGATGACAGTTTTATCTAACTCCCCATAATGATTTATGTGTAGTGATTGACCACACCTCTTCTAGTAATTCGATTTCTAGAAATATAATGTATTTCAATAATGAGTTAGTAGGAACAAATCCTTCTCTCCAACCTTTTGAGCCTATTTATGAAATTATTGATTTTCAAAATTTTGAGTCTTGTCAATCTGGTATTTTCATTAAAGAAAGTCTGTATTAGTAAATGGCTAGGATGATTTACTTTTGCCCTTTTCTACCCAAAGATAGTTTGTGTAAACCCTAATTTATTTTGATTTGAAATATTTGTTTTAGTTTTGAATTAATTTCTTTTAATTGAAACTTTGTTTAACGTGATGATAATTACTTATGAGTAGATAAGATATTTGTCATAATACATTGCACAACATGATAATTATGTGGGTAGAGTGTATTTGTAATTTTTGGAATGATTTTGAAACCTTCTACCTCCTTATTAAAACGTTACCTATGGGGTTTATTGGGGTAATTTTGGCAATTTCTACTTATTATTTTAATCATTTG ATGAATTCCATGTTCAGTTTCTTCGATGCCTTCGCCGCCGAATTGCTCCTCGGCAAATTCGTTAGGGATTCTTCCTCTGTTCCTTCCTTCACTCCTAACAACGGCGGCTCCGCCTCTTCCGCCGCTTCCGCCTCCCCGAAGTCGCTGCCGAACAAGAAAGAAGAAGCTAATTCCAAGAATTCGTCGATGAAGCCGAGATTTGCTCTGGAGTTAGATGGCCTCAATTGCTTCGAGACTCTCGTCCCGAATTGA MNSMFSFFDAFAAELLLGKFVRDSSSVPSFTPNNGGSASSAASASPKSLPNKKEEANSKNSSMKPRFALELDGLNCFETLVPN Homology
BLAST of Clc01G01460 vs. NCBI nr
Match: XP_023522684.1 (uncharacterized protein LOC111786686 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 122.1 bits (305), Expect = 2.3e-24 Identity = 68/87 (78.16%), Postives = 74/87 (85.06%), Query Frame = 0
BLAST of Clc01G01460 vs. NCBI nr
Match: KAG6579594.1 (hypothetical protein SDJN03_24042, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 121.7 bits (304), Expect = 3.0e-24 Identity = 69/87 (79.31%), Postives = 73/87 (83.91%), Query Frame = 0
BLAST of Clc01G01460 vs. NCBI nr
Match: XP_022929066.1 (uncharacterized protein LOC111435766 [Cucurbita moschata] >KAG7017054.1 hypothetical protein SDJN02_22166, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 121.7 bits (304), Expect = 3.0e-24 Identity = 69/87 (79.31%), Postives = 73/87 (83.91%), Query Frame = 0
BLAST of Clc01G01460 vs. NCBI nr
Match: XP_011654674.1 (uncharacterized protein LOC105435432 [Cucumis sativus]) HSP 1 Score: 114.0 bits (284), Expect = 6.2e-22 Identity = 65/84 (77.38%), Postives = 69/84 (82.14%), Query Frame = 0
BLAST of Clc01G01460 vs. NCBI nr
Match: KAA0042638.1 (uncharacterized protein E6C27_scaffold44G001360 [Cucumis melo var. makuwa] >TYK06039.1 uncharacterized protein E5676_scaffold376G001400 [Cucumis melo var. makuwa]) HSP 1 Score: 110.5 bits (275), Expect = 6.8e-21 Identity = 64/85 (75.29%), Postives = 71/85 (83.53%), Query Frame = 0
BLAST of Clc01G01460 vs. ExPASy TrEMBL
Match: A0A6J1EM23 (uncharacterized protein LOC111435766 OS=Cucurbita moschata OX=3662 GN=LOC111435766 PE=4 SV=1) HSP 1 Score: 121.7 bits (304), Expect = 1.4e-24 Identity = 69/87 (79.31%), Postives = 73/87 (83.91%), Query Frame = 0
BLAST of Clc01G01460 vs. ExPASy TrEMBL
Match: A0A0A0KJT8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G146930 PE=4 SV=1) HSP 1 Score: 114.0 bits (284), Expect = 3.0e-22 Identity = 65/84 (77.38%), Postives = 69/84 (82.14%), Query Frame = 0
BLAST of Clc01G01460 vs. ExPASy TrEMBL
Match: A0A5D3C6N3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001400 PE=4 SV=1) HSP 1 Score: 110.5 bits (275), Expect = 3.3e-21 Identity = 64/85 (75.29%), Postives = 71/85 (83.53%), Query Frame = 0
BLAST of Clc01G01460 vs. ExPASy TrEMBL
Match: A0A6J1E0L6 (uncharacterized protein LOC111026066 OS=Momordica charantia OX=3673 GN=LOC111026066 PE=4 SV=1) HSP 1 Score: 70.5 bits (171), Expect = 3.8e-09 Identity = 45/82 (54.88%), Postives = 54/82 (65.85%), Query Frame = 0
BLAST of Clc01G01460 vs. ExPASy TrEMBL
Match: A0A178WK55 (Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=At1g32928 PE=4 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 8.8e-06 Identity = 43/84 (51.19%), Postives = 53/84 (63.10%), Query Frame = 0
BLAST of Clc01G01460 vs. TAIR 10
Match: AT1G32928.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 59.3 bits (142), Expect = 1.7e-09 Identity = 43/84 (51.19%), Postives = 53/84 (63.10%), Query Frame = 0
BLAST of Clc01G01460 vs. TAIR 10
Match: AT1G32920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to wounding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32928.1); Has 42 Blast hits to 42 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 51.2 bits (121), Expect = 4.6e-07 Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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