Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACTTGGATCTTTGCAGAAGAATTACGAGGAGGTCAAAGCCATTTATGAGAAGCAAGAATCAAGGGTTTATCAATATGAAGCCAAACTCCAGAGCTTGGCCACTGGCTACCTCATGTTAGAACGCTTCTTCTTCTTTGGCATCTCTCCAATTCCTTCCTTCGGCTTCAACTGCAACCATTGGTGGGTCATTTTGGCTTTAAGTCTTTTGTGTACCCTTCTCTACTTTTTGCTTTTCATTGATGTTGTCATTGAGTTACATAAGATTCAGCATCACCATGACATGATCTGTAAGAAATTAGCTGAAATTAGCCAACAAATTTTGGCAGCAAAAGGCCAAGATGGTGTTGGTTTATCATTGGAGGATGGAGGGGAATTTGGTGATTATGGATTTGAATTGAGTTTCCATGAGAAGATTCTCTTGCTTGAGAAGTTTAGAATTGGTTGGAGGAAAGTTTTCATCTACTTCAGTGCCTGTGTTTTGCTTGCTGTTACTGCTGTTGACTTATATGCTTGCAAGTACTTGTTATGCAGCTGA
mRNA sequence
ATGGCACTTGGATCTTTGCAGAAGAATTACGAGGAGGTCAAAGCCATTTATGAGAAGCAAGAATCAAGGGTTTATCAATATGAAGCCAAACTCCAGAGCTTGGCCACTGGCTACCTCATGTTAGAACGCTTCTTCTTCTTTGGCATCTCTCCAATTCCTTCCTTCGGCTTCAACTGCAACCATTGGTGGGTCATTTTGGCTTTAAGTCTTTTGTGTACCCTTCTCTACTTTTTGCTTTTCATTGATGTTGTCATTGAGTTACATAAGATTCAGCATCACCATGACATGATCTGTAAGAAATTAGCTGAAATTAGCCAACAAATTTTGGCAGCAAAAGGCCAAGATGGTGTTGGTTTATCATTGGAGGATGGAGGGGAATTTGGTGATTATGGATTTGAATTGAGTTTCCATGAGAAGATTCTCTTGCTTGAGAAGTTTAGAATTGGTTGGAGGAAAGTTTTCATCTACTTCAGTGCCTGTGTTTTGCTTGCTGTTACTGCTGTTGACTTATATGCTTGCAAGTACTTGTTATGCAGCTGA
Coding sequence (CDS)
ATGGCACTTGGATCTTTGCAGAAGAATTACGAGGAGGTCAAAGCCATTTATGAGAAGCAAGAATCAAGGGTTTATCAATATGAAGCCAAACTCCAGAGCTTGGCCACTGGCTACCTCATGTTAGAACGCTTCTTCTTCTTTGGCATCTCTCCAATTCCTTCCTTCGGCTTCAACTGCAACCATTGGTGGGTCATTTTGGCTTTAAGTCTTTTGTGTACCCTTCTCTACTTTTTGCTTTTCATTGATGTTGTCATTGAGTTACATAAGATTCAGCATCACCATGACATGATCTGTAAGAAATTAGCTGAAATTAGCCAACAAATTTTGGCAGCAAAAGGCCAAGATGGTGTTGGTTTATCATTGGAGGATGGAGGGGAATTTGGTGATTATGGATTTGAATTGAGTTTCCATGAGAAGATTCTCTTGCTTGAGAAGTTTAGAATTGGTTGGAGGAAAGTTTTCATCTACTTCAGTGCCTGTGTTTTGCTTGCTGTTACTGCTGTTGACTTATATGCTTGCAAGTACTTGTTATGCAGCTGA
Protein sequence
MALGSLQKNYEEVKAIYEKQESRVYQYEAKLQSLATGYLMLERFFFFGISPIPSFGFNCNHWWVILALSLLCTLLYFLLFIDVVIELHKIQHHHDMICKKLAEISQQILAAKGQDGVGLSLEDGGEFGDYGFELSFHEKILLLEKFRIGWRKVFIYFSACVLLAVTAVDLYACKYLLCS
Homology
BLAST of Clc01G00840 vs. NCBI nr
Match:
XP_022157182.1 (uncharacterized protein LOC111023958 [Momordica charantia] >XP_022157183.1 uncharacterized protein LOC111023958 [Momordica charantia])
HSP 1 Score: 194.9 bits (494), Expect = 6.0e-46
Identity = 104/179 (58.10%), Postives = 131/179 (73.18%), Query Frame = 0
Query: 1 MALGSLQKNYEEVKAIYEKQESRVYQYEAKLQSLATGYLMLERFFFFGISPIPSFGFNCN 60
MALG L++ +EE+K I EKQESRV YE K+Q++ GYL+ R FFFGIS S FNC
Sbjct: 1 MALGELERKFEELKDINEKQESRVRYYETKVQNIVFGYLIFTRLFFFGISQTSS-SFNCK 60
Query: 61 HWWVILALSLLCTLLYFLLFIDVVIELHKIQHHHDMICKKLAEISQQILAAKGQDGVGLS 120
WWVILALSLLC+ +YFLLF+D V L + Q+ D+ICK+L E+ QQIL +K QD VGLS
Sbjct: 61 DWWVILALSLLCSFIYFLLFLDAVAMLFRTQYQLDIICKELKELFQQILVSKNQDDVGLS 120
Query: 121 LEDGGEFGDYGFELSFHEKILLLEKFRIGWRKVFIYFSACVLLAVTAVDLYACKYLLCS 180
+E G G GFE FHEK+L+L+ FRI RKV+IYF+ LLAVTA++LY KY+LC+
Sbjct: 121 METGESSG--GFEFGFHEKMLMLDHFRIVGRKVYIYFTVSALLAVTAIELYVSKYVLCN 176
BLAST of Clc01G00840 vs. NCBI nr
Match:
XP_022157176.1 (uncharacterized protein LOC111023953 isoform X2 [Momordica charantia])
HSP 1 Score: 184.9 bits (468), Expect = 6.2e-43
Identity = 99/179 (55.31%), Postives = 131/179 (73.18%), Query Frame = 0
Query: 1 MALGSLQKNYEEVKAIYEKQESRVYQYEAKLQSLATGYLMLERFFFFGISPIPSFGFNCN 60
MA+G L++ + E+K I EKQESRV +EAK Q + +GYL+L R FFFGIS S C+
Sbjct: 1 MAVGELRRKFGELKDINEKQESRVRYHEAKFQKIVSGYLILTRLFFFGISQTSS--SKCH 60
Query: 61 HWWVILALSLLCTLLYFLLFIDVVIELHKIQHHHDMICKKLAEISQQILAAKGQDGVGLS 120
WWVIL+LSLLC+ +YFLLF+D L++ + DMICK+L E+ QQIL A+ QD V L+
Sbjct: 61 DWWVILSLSLLCSFVYFLLFLDAATRLYQTKGQLDMICKELIEVCQQILVAQNQDDVDLA 120
Query: 121 LEDGGEFGDYGFELSFHEKILLLEKFRIGWRKVFIYFSACVLLAVTAVDLYACKYLLCS 180
+E GG+F D GFE FHEK+L+L+ FR RKV+IYF+ C L+AVTA++LY KYLLC+
Sbjct: 121 ME-GGDFSD-GFEFGFHEKMLVLDHFRFVGRKVYIYFTVCALVAVTAIELYVSKYLLCN 175
BLAST of Clc01G00840 vs. NCBI nr
Match:
KAA0042579.1 (WD repeat-containing protein 91-like protein [Cucumis melo var. makuwa] >TYK05983.1 WD repeat-containing protein 91-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 162.5 bits (410), Expect = 3.3e-36
Identity = 95/179 (53.07%), Postives = 123/179 (68.72%), Query Frame = 0
Query: 3 LGSLQKNYEEVKAIYEKQESRVYQYEAKLQSLATGYLMLERFFFFGISPIPSFGFNCNHW 62
LG L++N+ +K I + QE+ + E KLQ++ GYL R FFFG+ SF F C W
Sbjct: 47 LGDLRRNFVLLKDINDNQETSLRYCETKLQNVVLGYLSWGRLFFFGV----SFSFKCKDW 106
Query: 63 WVILALSLLCTLLYFLLFIDVVIELHKIQHHHDMICKKLAEISQQILAAKGQDGVGLSLE 122
WVILAL+L T YFLLF+D VI L + D+I K+LAEI QQIL A+ QD VGLS+E
Sbjct: 107 WVILALTLFYTFFYFLLFMDAVIMLSRTHDQLDIIRKELAEICQQILVAQNQDNVGLSME 166
Query: 123 DGGEFGDYGFELSFHEKILLLEKFRI--GWRKVFIYFSACVLLAVTAVDLYACKYLLCS 180
GE D GFELSFHE++ +L++FR+ RKV+IYF C LLA+TA++LYACK LLC+
Sbjct: 167 -AGEDSD-GFELSFHERMFMLDQFRVVETGRKVYIYFIVCPLLAITAIELYACKCLLCN 219
BLAST of Clc01G00840 vs. NCBI nr
Match:
KAE8647812.1 (hypothetical protein Csa_000331 [Cucumis sativus])
HSP 1 Score: 151.0 bits (380), Expect = 9.9e-33
Identity = 89/179 (49.72%), Postives = 118/179 (65.92%), Query Frame = 0
Query: 3 LGSLQKNYEEVKAIYEKQESRVYQYEAKLQSLATGYLMLERFFFFGISPIPSFGFNCNHW 62
LG L+KN+ +K I + QE+ + E KLQ++ GYL R FFFG SF F C W
Sbjct: 4 LGDLRKNFVLLKHINDNQETSLRYCETKLQNIVLGYLSWGRLFFFGF----SFSFKCKDW 63
Query: 63 WVILALSLLCTLLYFLLFIDVVIELHKIQHHHDMICKKLAEISQQILAAKGQDGVGLSLE 122
WV+L+L+LL T LY LLF+D V+ L + +I K+L EI QQIL A+ QD V LS+E
Sbjct: 64 WVVLSLTLLSTFLYLLLFMDAVVMLSRTHDQLGIIRKELTEICQQILVAQNQDTVDLSME 123
Query: 123 DGGEFGDYGFELSFHEKILLLEKFRI--GWRKVFIYFSACVLLAVTAVDLYACKYLLCS 180
GGE D GFELSFHE++ +L++F + RK +IYF C LL +TA++LYACK LLC+
Sbjct: 124 -GGECCD-GFELSFHERMFMLDQFSVVENGRKGYIYFIVCALLVITAIELYACKRLLCN 176
BLAST of Clc01G00840 vs. NCBI nr
Match:
KAG6579338.1 (hypothetical protein SDJN03_23786, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 151.0 bits (380), Expect = 9.9e-33
Identity = 85/178 (47.75%), Postives = 119/178 (66.85%), Query Frame = 0
Query: 1 MALGSLQKNYEEVKAIYEKQESRVYQYEAKLQSLATGYLMLERFFFFGISPIPSFGFNCN 60
MA G L++ ++E+ + EKQE++V ++ K+Q++ GYL+ R F +GIS + F CN
Sbjct: 1 MAHGELKRRFKELIDVNEKQETKVCYHKNKVQNIVFGYLIWVRLFIYGIS--QALSFKCN 60
Query: 61 HWWVILALSLLCTLLYFLLFIDVVIELHKIQHHHDMICKKLAEISQQILAAKGQDGVGLS 120
+WWVILALSLL +YFLLF+D + LH+ Q+ D+ICK+L E QQ L K +D +
Sbjct: 61 NWWVILALSLLWNFIYFLLFLDAMTMLHRAQYQLDIICKELIEFCQQNLIPKNRD--DMD 120
Query: 121 LEDGGEFGDYGFELSFHEKILLLEKFRIGWRKVFIYFSACVLLAVTAVDLYACKYLLC 179
L + GE D GFE FH+K+L+L+ I R V+IYF C LLAV A++LYA KYLLC
Sbjct: 121 LVEAGESRD-GFEFGFHKKMLMLDHSTIVGRNVYIYFIVCALLAVAAIELYAYKYLLC 173
BLAST of Clc01G00840 vs. ExPASy TrEMBL
Match:
A0A6J1DSQ0 (uncharacterized protein LOC111023958 OS=Momordica charantia OX=3673 GN=LOC111023958 PE=4 SV=1)
HSP 1 Score: 194.9 bits (494), Expect = 2.9e-46
Identity = 104/179 (58.10%), Postives = 131/179 (73.18%), Query Frame = 0
Query: 1 MALGSLQKNYEEVKAIYEKQESRVYQYEAKLQSLATGYLMLERFFFFGISPIPSFGFNCN 60
MALG L++ +EE+K I EKQESRV YE K+Q++ GYL+ R FFFGIS S FNC
Sbjct: 1 MALGELERKFEELKDINEKQESRVRYYETKVQNIVFGYLIFTRLFFFGISQTSS-SFNCK 60
Query: 61 HWWVILALSLLCTLLYFLLFIDVVIELHKIQHHHDMICKKLAEISQQILAAKGQDGVGLS 120
WWVILALSLLC+ +YFLLF+D V L + Q+ D+ICK+L E+ QQIL +K QD VGLS
Sbjct: 61 DWWVILALSLLCSFIYFLLFLDAVAMLFRTQYQLDIICKELKELFQQILVSKNQDDVGLS 120
Query: 121 LEDGGEFGDYGFELSFHEKILLLEKFRIGWRKVFIYFSACVLLAVTAVDLYACKYLLCS 180
+E G G GFE FHEK+L+L+ FRI RKV+IYF+ LLAVTA++LY KY+LC+
Sbjct: 121 METGESSG--GFEFGFHEKMLMLDHFRIVGRKVYIYFTVSALLAVTAIELYVSKYVLCN 176
BLAST of Clc01G00840 vs. ExPASy TrEMBL
Match:
A0A6J1DX74 (uncharacterized protein LOC111023953 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111023953 PE=4 SV=1)
HSP 1 Score: 184.9 bits (468), Expect = 3.0e-43
Identity = 99/179 (55.31%), Postives = 131/179 (73.18%), Query Frame = 0
Query: 1 MALGSLQKNYEEVKAIYEKQESRVYQYEAKLQSLATGYLMLERFFFFGISPIPSFGFNCN 60
MA+G L++ + E+K I EKQESRV +EAK Q + +GYL+L R FFFGIS S C+
Sbjct: 1 MAVGELRRKFGELKDINEKQESRVRYHEAKFQKIVSGYLILTRLFFFGISQTSS--SKCH 60
Query: 61 HWWVILALSLLCTLLYFLLFIDVVIELHKIQHHHDMICKKLAEISQQILAAKGQDGVGLS 120
WWVIL+LSLLC+ +YFLLF+D L++ + DMICK+L E+ QQIL A+ QD V L+
Sbjct: 61 DWWVILSLSLLCSFVYFLLFLDAATRLYQTKGQLDMICKELIEVCQQILVAQNQDDVDLA 120
Query: 121 LEDGGEFGDYGFELSFHEKILLLEKFRIGWRKVFIYFSACVLLAVTAVDLYACKYLLCS 180
+E GG+F D GFE FHEK+L+L+ FR RKV+IYF+ C L+AVTA++LY KYLLC+
Sbjct: 121 ME-GGDFSD-GFEFGFHEKMLVLDHFRFVGRKVYIYFTVCALVAVTAIELYVSKYLLCN 175
BLAST of Clc01G00840 vs. ExPASy TrEMBL
Match:
A0A5A7TMJ1 (WD repeat-containing protein 91-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00790 PE=4 SV=1)
HSP 1 Score: 162.5 bits (410), Expect = 1.6e-36
Identity = 95/179 (53.07%), Postives = 123/179 (68.72%), Query Frame = 0
Query: 3 LGSLQKNYEEVKAIYEKQESRVYQYEAKLQSLATGYLMLERFFFFGISPIPSFGFNCNHW 62
LG L++N+ +K I + QE+ + E KLQ++ GYL R FFFG+ SF F C W
Sbjct: 47 LGDLRRNFVLLKDINDNQETSLRYCETKLQNVVLGYLSWGRLFFFGV----SFSFKCKDW 106
Query: 63 WVILALSLLCTLLYFLLFIDVVIELHKIQHHHDMICKKLAEISQQILAAKGQDGVGLSLE 122
WVILAL+L T YFLLF+D VI L + D+I K+LAEI QQIL A+ QD VGLS+E
Sbjct: 107 WVILALTLFYTFFYFLLFMDAVIMLSRTHDQLDIIRKELAEICQQILVAQNQDNVGLSME 166
Query: 123 DGGEFGDYGFELSFHEKILLLEKFRI--GWRKVFIYFSACVLLAVTAVDLYACKYLLCS 180
GE D GFELSFHE++ +L++FR+ RKV+IYF C LLA+TA++LYACK LLC+
Sbjct: 167 -AGEDSD-GFELSFHERMFMLDQFRVVETGRKVYIYFIVCPLLAITAIELYACKCLLCN 219
BLAST of Clc01G00840 vs. ExPASy TrEMBL
Match:
A0A0A0KJZ3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139810 PE=4 SV=1)
HSP 1 Score: 151.0 bits (380), Expect = 4.8e-33
Identity = 89/179 (49.72%), Postives = 118/179 (65.92%), Query Frame = 0
Query: 3 LGSLQKNYEEVKAIYEKQESRVYQYEAKLQSLATGYLMLERFFFFGISPIPSFGFNCNHW 62
LG L+KN+ +K I + QE+ + E KLQ++ GYL R FFFG SF F C W
Sbjct: 81 LGDLRKNFVLLKHINDNQETSLRYCETKLQNIVLGYLSWGRLFFFGF----SFSFKCKDW 140
Query: 63 WVILALSLLCTLLYFLLFIDVVIELHKIQHHHDMICKKLAEISQQILAAKGQDGVGLSLE 122
WV+L+L+LL T LY LLF+D V+ L + +I K+L EI QQIL A+ QD V LS+E
Sbjct: 141 WVVLSLTLLSTFLYLLLFMDAVVMLSRTHDQLGIIRKELTEICQQILVAQNQDTVDLSME 200
Query: 123 DGGEFGDYGFELSFHEKILLLEKFRI--GWRKVFIYFSACVLLAVTAVDLYACKYLLCS 180
GGE D GFELSFHE++ +L++F + RK +IYF C LL +TA++LYACK LLC+
Sbjct: 201 -GGECCD-GFELSFHERMFMLDQFSVVENGRKGYIYFIVCALLVITAIELYACKRLLCN 253
BLAST of Clc01G00840 vs. ExPASy TrEMBL
Match:
A0A6J1DS87 (uncharacterized protein LOC111023927 OS=Momordica charantia OX=3673 GN=LOC111023927 PE=4 SV=1)
HSP 1 Score: 147.1 bits (370), Expect = 6.9e-32
Identity = 83/179 (46.37%), Postives = 116/179 (64.80%), Query Frame = 0
Query: 1 MALGSLQKNYEEVKAIYEKQESRVYQYEAKLQSLATGYLMLERFFFFGISPIPSFGFNCN 60
M G L++N+E +K + EKQESRV +E++ Q++ YL+ R FFF IS S C
Sbjct: 1 MEFGELKRNFEALKDLVEKQESRVQYHESRAQNITMAYLIWGRLFFFAISQTSSSLLKCI 60
Query: 61 HWWVILALSLLCTLLYFLLFIDVVIELHKIQHHHDMICKKLAEISQQILAAKGQ-DGVGL 120
WW++L LS+ C +YFL F++ V L+++QH D+ICK+ AEI QQIL A+ Q D V L
Sbjct: 61 DWWMVLGLSVSCAFVYFLFFLEAVTMLYRVQHQMDIICKEQAEICQQILVARSQLDDVDL 120
Query: 121 SLEDGGEFGDYGFELSFHEKILLLEKFRIGWRKVFIYFSACVLLAVTAVDLYACKYLLC 179
++E G+ D GF+ SFH K+L FRI RK +I + LLAVTA++LYAC +L C
Sbjct: 121 AME-AGDSSD-GFQFSFHVKLLEYGAFRIVERKFYICATVSALLAVTAIELYACSWLYC 177
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022157182.1 | 6.0e-46 | 58.10 | uncharacterized protein LOC111023958 [Momordica charantia] >XP_022157183.1 uncha... | [more] |
XP_022157176.1 | 6.2e-43 | 55.31 | uncharacterized protein LOC111023953 isoform X2 [Momordica charantia] | [more] |
KAA0042579.1 | 3.3e-36 | 53.07 | WD repeat-containing protein 91-like protein [Cucumis melo var. makuwa] >TYK0598... | [more] |
KAE8647812.1 | 9.9e-33 | 49.72 | hypothetical protein Csa_000331 [Cucumis sativus] | [more] |
KAG6579338.1 | 9.9e-33 | 47.75 | hypothetical protein SDJN03_23786, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1DSQ0 | 2.9e-46 | 58.10 | uncharacterized protein LOC111023958 OS=Momordica charantia OX=3673 GN=LOC111023... | [more] |
A0A6J1DX74 | 3.0e-43 | 55.31 | uncharacterized protein LOC111023953 isoform X2 OS=Momordica charantia OX=3673 G... | [more] |
A0A5A7TMJ1 | 1.6e-36 | 53.07 | WD repeat-containing protein 91-like protein OS=Cucumis melo var. makuwa OX=1194... | [more] |
A0A0A0KJZ3 | 4.8e-33 | 49.72 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139810 PE=4 SV=1 | [more] |
A0A6J1DS87 | 6.9e-32 | 46.37 | uncharacterized protein LOC111023927 OS=Momordica charantia OX=3673 GN=LOC111023... | [more] |
Match Name | E-value | Identity | Description | |