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Clc01G00370 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTTTCATTTATCATCTAGGAGAGATTAATTTATATTTAAGAAAAAAACTTTGTGTTGTCAAATACGTAAACAAACAAAGTTTAAAGAAGAAGAGACTTAAAACCAAAGTTAACGATTGGAAAAATATAGCATATAAAAAAATAGAGAAGATGAAAAAAGAAAATAGAGAGGCTTTGGATGAAATGAAGAATGAGAAAATGTTGGGTCTAACAATTTTCCTTTAATTAATTAATTAATTAATAATAATAATAATAATAAGTAAAAAAAAAAAAAAAAAAAAAAGGATTAATTTTGTGAGATGAAGTTTTGAATTGGTCATTGTGATCTAATAATAGAAATTGGAAAAATGAAGAAATTGAAAAAAGGGAAAACCCCAAAAATTGTCTTCCTGTTTGACCCTTCTTCCATTGTCTTCTTCGCTGATTTTGTGTGTGTTTCCACAGAAGACCCAAGGCAGGCAAGAGGAAGAAGAAATCCGCCATAGCCATGGAGAATCAAAGCACCTGCTTGTCCTATGAGAAGCTCAACGGAATGGCCACCTGGGTCGGAACCAGCGTCGCCTCCGCTTTCTTCGCCTCTCTTGAGCGATGTTCCTGCATCAATCTCTCCACCTCCGACGACCACGAAGATTCCGAAGAGGCTCATGATCGCCCTCTCATGTACTGTACCTCCACTTCTTCCTCCGTCGTTATTCGCAGCTTCGAACCGCTTCCTCCTCCGGTCAATGATGTCGCCAATCTCCCCGTCTGACCGCCGCTCTCCCTGGATCTGAGGTCCTTTCCAAATTAGGTTTTCTTCGGATTTGTTGCCGGATCGGAATGTTTTTCGGGTTTTTTTTTTTTTTCTTTTAAAAAAGATCTTCTTCTTTGTTCTATGCGTTCCTTTTCCTTTCCTTTTCCTATCCCTTTCCCTTGCTCTGGGATTGAGGATTTTGTGTTCCATCAGTTTTCTTCGTTTGTTGATATCTATCCTTCTTTTCTGTGAATTACAAATGGAATGTTGTAATAAAAATTAACCGGAAACAAGTTGTGTTCCTTTGATTCTTGTTGGTTTCTAATCATTATTTGAGATTGAGATCATTTAAAATTGTGTCATCCATCGCTAAATCTATGTGGTTTTGATCTTTGCTTTCTTGGAACTGCATGATTTTCTACCGTTCTTTGTCCAAAACTCTTTGACCGATGACCCAAATTGAATTAGGATCAAGATGGATATGGTGTTGCTAATGCTGGCCATTGGATAGTTTCATAAGTCACCCACCACTTCCCCGAGTTTCCGCTGGTAAAAGGAATATTTCCCTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTCTTTTTTTTTTTTTTCTCTTTTGATATTGAACTTGTGCAGATGCAGATCTGAGCTTTCTCTCTTTCTGCCATTTTTGCTTTTGAAAATTCGAAAGCATGTACTTGTGATTATTAATTTATGAACTTTCTTCCTGCCTTTTTTCTTGTTCTTGATTGCTTGTTCATGAGTCATAATGCAGTTAATGATATGGGATGTCTAGGAGTTGGCTAACATATTCTGAAATATGATTTGAGGCAGTTGGAAAGACAACATTCGTACTATTTTGTCATTCATTTTTGGATCTCATCAGACACTAACACCTCATCAATTCTTATTTTATGTCTGAAAACACAAGGCATTGGAATATAATATTTGATGAGAGAGAGAGAGAGATCTCCTTCTCCAAACTCCAAAGCAGAATAAACAAGATATCAATATTTAAACAAACATGAGTGAAGTTTGTTCTTTAGAATTTAAAAACAAAAGTGGGAGAAGAAGAATGGAAGATGTTACATGTTTCTTTGTCTGCTTCTTGGGATTTGGAATTTAGATCTCAAAAGCATTAGTATTTTTCTTTTTGTCAGTACAGCTAATTGATTCCAATCATTTGCCTTCTGATTCAGTGCAGGAACATGGCCACATAGCTTGGTGGTAGCAGAGAGCTTTAACATAAATGGCAGAAGAAAGCAGGGGGAACAAGGAAACTGCAAACAAGCACCTGTTAATTCACTATTTTAATAACCACATTCAATGTAAAGAATATTTAGATTATATTCACACATACAGAAGCCAAGAACAGATCTTTTTTCTATTTTTATATATCTTGTAAGTTGTAATCAACTGTTAATTAAAAGTAAATGTATAAATCATTTGAATACGATCAAGTCCCTTTCAGTCACAATCCAATCATCAAC CTTTCATTTATCATCTAGGAGAGATTAATTTATATTTAAGAAAAAAACTTTGTGTTGTCAAATACGTAAACAAACAAAGTTTAAAGAAGAAGAGACTTAAAACCAAAGTTAACGATTGGAAAAATATAGCATATAAAAAAATAGAGAAGATGAAAAAAGAAAATAGAGAGGCTTTGGATGAAATGAAGAATGAGAAAATAAGACCCAAGGCAGGCAAGAGGAAGAAGAAATCCGCCATAGCCATGGAGAATCAAAGCACCTGCTTGTCCTATGAGAAGCTCAACGGAATGGCCACCTGGGTCGGAACCAGCGTCGCCTCCGCTTTCTTCGCCTCTCTTGAGCGATGTTCCTGCATCAATCTCTCCACCTCCGACGACCACGAAGATTCCGAAGAGGCTCATGATCGCCCTCTCATGTACTGTACCTCCACTTCTTCCTCCGTCGTTATTCGCAGCTTCGAACCGCTTCCTCCTCCGGTCAATGATGTCGCCAATCTCCCCGTCTGACCGCCGCTCTCCCTGGATCTGAGTGCAGGAACATGGCCACATAGCTTGGTGGTAGCAGAGAGCTTTAACATAAATGGCAGAAGAAAGCAGGGGGAACAAGGAAACTGCAAACAAGCACCTGTTAATTCACTATTTTAATAACCACATTCAATGTAAAGAATATTTAGATTATATTCACACATACAGAAGCCAAGAACAGATCTTTTTTCTATTTTTATATATCTTGTAAGTTGTAATCAACTGTTAATTAAAAGTAAATGTATAAATCATTTGAATACGATCAAGTCCCTTTCAGTCACAATCCAATCATCAAC ATGAAAAAAGAAAATAGAGAGGCTTTGGATGAAATGAAGAATGAGAAAATAAGACCCAAGGCAGGCAAGAGGAAGAAGAAATCCGCCATAGCCATGGAGAATCAAAGCACCTGCTTGTCCTATGAGAAGCTCAACGGAATGGCCACCTGGGTCGGAACCAGCGTCGCCTCCGCTTTCTTCGCCTCTCTTGAGCGATGTTCCTGCATCAATCTCTCCACCTCCGACGACCACGAAGATTCCGAAGAGGCTCATGATCGCCCTCTCATGTACTGTACCTCCACTTCTTCCTCCGTCGTTATTCGCAGCTTCGAACCGCTTCCTCCTCCGGTCAATGATGTCGCCAATCTCCCCGTCTGA MKKENREALDEMKNEKIRPKAGKRKKKSAIAMENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDSEEAHDRPLMYCTSTSSSVVIRSFEPLPPPVNDVANLPV Homology
BLAST of Clc01G00370 vs. NCBI nr
Match: XP_038875439.1 (uncharacterized protein LOC120067894 [Benincasa hispida] >XP_038875440.1 uncharacterized protein LOC120067894 [Benincasa hispida] >XP_038875441.1 uncharacterized protein LOC120067894 [Benincasa hispida] >XP_038875442.1 uncharacterized protein LOC120067894 [Benincasa hispida]) HSP 1 Score: 212.6 bits (540), Expect = 1.8e-51 Identity = 112/118 (94.92%), Postives = 114/118 (96.61%), Query Frame = 0
BLAST of Clc01G00370 vs. NCBI nr
Match: XP_008437637.1 (PREDICTED: uncharacterized protein LOC103482984 [Cucumis melo] >XP_008437638.1 PREDICTED: uncharacterized protein LOC103482984 [Cucumis melo] >XP_008437639.1 PREDICTED: uncharacterized protein LOC103482984 [Cucumis melo] >XP_008437640.1 PREDICTED: uncharacterized protein LOC103482984 [Cucumis melo]) HSP 1 Score: 211.5 bits (537), Expect = 4.1e-51 Identity = 111/120 (92.50%), Postives = 113/120 (94.17%), Query Frame = 0
BLAST of Clc01G00370 vs. NCBI nr
Match: XP_011654597.1 (uncharacterized protein LOC101207351 isoform X1 [Cucumis sativus] >XP_011654598.1 uncharacterized protein LOC101207351 isoform X1 [Cucumis sativus] >XP_011654599.1 uncharacterized protein LOC101207351 isoform X1 [Cucumis sativus] >XP_011654600.1 uncharacterized protein LOC101207351 isoform X1 [Cucumis sativus] >XP_031742147.1 uncharacterized protein LOC101207351 isoform X1 [Cucumis sativus] >KAE8647797.1 hypothetical protein Csa_000040 [Cucumis sativus]) HSP 1 Score: 196.8 bits (499), Expect = 1.0e-46 Identity = 110/126 (87.30%), Postives = 111/126 (88.10%), Query Frame = 0
BLAST of Clc01G00370 vs. NCBI nr
Match: XP_031742148.1 (uncharacterized protein LOC101207351 isoform X2 [Cucumis sativus]) HSP 1 Score: 194.9 bits (494), Expect = 3.9e-46 Identity = 108/125 (86.40%), Postives = 111/125 (88.80%), Query Frame = 0
BLAST of Clc01G00370 vs. NCBI nr
Match: XP_022137766.1 (uncharacterized protein LOC111009130 [Momordica charantia] >XP_022137767.1 uncharacterized protein LOC111009130 [Momordica charantia] >XP_022137768.1 uncharacterized protein LOC111009130 [Momordica charantia]) HSP 1 Score: 173.7 bits (439), Expect = 9.4e-40 Identity = 85/87 (97.70%), Postives = 85/87 (97.70%), Query Frame = 0
BLAST of Clc01G00370 vs. ExPASy TrEMBL
Match: A0A1S3AU63 (uncharacterized protein LOC103482984 OS=Cucumis melo OX=3656 GN=LOC103482984 PE=4 SV=1) HSP 1 Score: 211.5 bits (537), Expect = 2.0e-51 Identity = 111/120 (92.50%), Postives = 113/120 (94.17%), Query Frame = 0
BLAST of Clc01G00370 vs. ExPASy TrEMBL
Match: A0A6J1C970 (uncharacterized protein LOC111009130 OS=Momordica charantia OX=3673 GN=LOC111009130 PE=4 SV=1) HSP 1 Score: 173.7 bits (439), Expect = 4.5e-40 Identity = 85/87 (97.70%), Postives = 85/87 (97.70%), Query Frame = 0
BLAST of Clc01G00370 vs. ExPASy TrEMBL
Match: A0A0A0KLU3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139175 PE=4 SV=1) HSP 1 Score: 169.5 bits (428), Expect = 8.5e-39 Identity = 85/87 (97.70%), Postives = 85/87 (97.70%), Query Frame = 0
BLAST of Clc01G00370 vs. ExPASy TrEMBL
Match: A0A6J1E5Z9 (uncharacterized protein LOC111430272 OS=Cucurbita moschata OX=3662 GN=LOC111430272 PE=4 SV=1) HSP 1 Score: 164.5 bits (415), Expect = 2.7e-37 Identity = 82/87 (94.25%), Postives = 84/87 (96.55%), Query Frame = 0
BLAST of Clc01G00370 vs. ExPASy TrEMBL
Match: A0A6J1ID63 (uncharacterized protein LOC111471501 OS=Cucurbita maxima OX=3661 GN=LOC111471501 PE=4 SV=1) HSP 1 Score: 162.9 bits (411), Expect = 8.0e-37 Identity = 80/87 (91.95%), Postives = 84/87 (96.55%), Query Frame = 0
BLAST of Clc01G00370 vs. TAIR 10
Match: AT4G10810.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24026.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 74.7 bits (182), Expect = 5.5e-14 Identity = 38/61 (62.30%), Postives = 47/61 (77.05%), Query Frame = 0
BLAST of Clc01G00370 vs. TAIR 10
Match: AT4G24026.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 67.8 bits (164), Expect = 6.7e-12 Identity = 34/64 (53.12%), Postives = 44/64 (68.75%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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