Clc00G02700 (gene) Watermelon (cordophanus) v2

Overview
NameClc00G02700
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionProtein Ycf2
LocationClcCtg023: 78841 .. 79567 (+)
RNA-Seq ExpressionClc00G02700
SyntenyClc00G02700
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCGAAAGAAAAAATCTCTATTTGACAGGGTTTCTTCCTATACCTATGAATTTCATTGGACCCAGAAATGATAGATTGGAAGAATCTTTTGGCTCTTCCAATATCAATAGGTTGATTGTTTCGCTCCTGTATCTTCCAAAAGGAAAAAAGATCTCTGAGAGCTGTTTCCTGGATCCGAAAGAGAGTACTTGGGTTCTCCCAATAACTAAAAAGTGTATCATGCCTGAATCTAACTGGGGTTCGCGGTGGTGGAGGAACTGGATCGGAAAAAAGAGGGATTCCAGTTGTAAGATATCTAATGAAACCGTCGCTGGAATGGAGATCTCATTCAAAGAGAAAGATATCAAATATCTGGAGTTTCTTTTTGTATATTATATGGATGATCAGATCCGCAAGGACCATGATTGGGAATTGTTTGATCGTCTTTCTCCGAGGAAGAGGCGAAACATAATCAACTTGAATTCGGGACAGCTATTCGAAATCTTAGTGAAAGACTGGATTTGTTATCTCATGTTTGCTTTTCGTGAAAAAATACCAATTGAAGTGGAGGGCTTCTTCAAACAACAAGGAGCTGGGTCAACTATTCAATCAAATGATATTGAGCATGTTTCCCATCTCTTCTCGAGAAACAAGTGGGCTATTTCTTTGCAAAATTGTGCTCAATTTCATATGTGGCAATTCCGCCAAGATCTCTTCTTTAGTTGGGGGAAGAATCCGCACGAAT

mRNA sequence

ATGGTCGAAAGAAAAAATCTCTATTTGACAGGGTTTCTTCCTATACCTATGAATTTCATTGGACCCAGAAATGATAGATTGGAAGAATCTTTTGGCTCTTCCAATATCAATAGGTTGATTGTTTCGCTCCTGTATCTTCCAAAAGGAAAAAAGATCTCTGAGAGCTGTTTCCTGGATCCGAAAGAGAGTACTTGGGTTCTCCCAATAACTAAAAAGTGTATCATGCCTGAATCTAACTGGGGTTCGCGGTGGTGGAGGAACTGGATCGGAAAAAAGAGGGATTCCAGTTGTAAGATATCTAATGAAACCGTCGCTGGAATGGAGATCTCATTCAAAGAGAAAGATATCAAATATCTGGAGTTTCTTTTTGTATATTATATGGATGATCAGATCCGCAAGGACCATGATTGGGAATTGTTTGATCGTCTTTCTCCGAGGAAGAGGCGAAACATAATCAACTTGAATTCGGGACAGCTATTCGAAATCTTAGTGAAAGACTGGATTTGTTATCTCATGTTTGCTTTTCGTGAAAAAATACCAATTGAAGTGGAGGGCTTCTTCAAACAACAAGGAGCTGGGTCAACTATTCAATCAAATGATATTGAGCATGTTTCCCATCTCTTCTCGAGAAACAAGTGGGCTATTTCTTTGCAAAATTGTGCTCAATTTCATATGTGGCAATTCCGCCAAGATCTCTTCTTTAGTTGGGGGAAGAATCCGCACGAAT

Coding sequence (CDS)

ATGGTCGAAAGAAAAAATCTCTATTTGACAGGGTTTCTTCCTATACCTATGAATTTCATTGGACCCAGAAATGATAGATTGGAAGAATCTTTTGGCTCTTCCAATATCAATAGGTTGATTGTTTCGCTCCTGTATCTTCCAAAAGGAAAAAAGATCTCTGAGAGCTGTTTCCTGGATCCGAAAGAGAGTACTTGGGTTCTCCCAATAACTAAAAAGTGTATCATGCCTGAATCTAACTGGGGTTCGCGGTGGTGGAGGAACTGGATCGGAAAAAAGAGGGATTCCAGTTGTAAGATATCTAATGAAACCGTCGCTGGAATGGAGATCTCATTCAAAGAGAAAGATATCAAATATCTGGAGTTTCTTTTTGTATATTATATGGATGATCAGATCCGCAAGGACCATGATTGGGAATTGTTTGATCGTCTTTCTCCGAGGAAGAGGCGAAACATAATCAACTTGAATTCGGGACAGCTATTCGAAATCTTAGTGAAAGACTGGATTTGTTATCTCATGTTTGCTTTTCGTGAAAAAATACCAATTGAAGTGGAGGGCTTCTTCAAACAACAAGGAGCTGGGTCAACTATTCAATCAAATGATATTGAGCATGTTTCCCATCTCTTCTCGAGAAACAAGTGGGCTATTTCTTTGCAAAATTGTGCTCAATTTCATATGTGGCAATTCCGCCAAGATCTCTTCTTTAGTTGGGGGAAGAATCCGCACGAAT

Protein sequence

MVERKNLYLTGFLPIPMNFIGPRNDRLEESFGSSNINRLIVSLLYLPKGKKISESCFLDPKESTWVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGMEISFKEKDIKYLEFLFVYYMDDQIRKDHDWELFDRLSPRKRRNIINLNSGQLFEILVKDWICYLMFAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFHMWQFRQDLFFSWGKNPHE
Homology
BLAST of Clc00G02700 vs. NCBI nr
Match: YP_009326033.1 (Ycf2 [Citrullus lanatus] >YP_009326052.1 Ycf2 [Citrullus lanatus] >YP_009348075.1 Ycf2 [Citrullus mucosospermus] >YP_009348094.1 Ycf2 [Citrullus mucosospermus] >YP_009431600.1 Ycf2 [Citrullus amarus] >YP_009431619.1 Ycf2 [Citrullus amarus] >APW82506.1 Ycf2 [Citrullus lanatus subsp. vulgaris] >APD52524.1 Ycf2 [Citrullus lanatus] >APD52544.1 Ycf2 [Citrullus lanatus] >APW82525.1 Ycf2 [Citrullus lanatus subsp. vulgaris] >APW82591.1 Ycf2 [Citrullus lanatus subsp. vulgaris])

HSP 1 Score: 515.0 bits (1325), Expect = 3.5e-142
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0

Query: 1   MVERKNLYLTGFLPIPMNFIGPRNDRLEESFGSSNINRLIVSLLYLPKGKKISESCFLDP 60
           MVERKNLYLTGFLPIPMNFIGPRNDRLEESFGSSNINRLIVSLLYLPKGKKISESCFLDP
Sbjct: 93  MVERKNLYLTGFLPIPMNFIGPRNDRLEESFGSSNINRLIVSLLYLPKGKKISESCFLDP 152

Query: 61  KESTWVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGMEISFKEKDIKYLE 120
           KESTWVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGMEISFKEKDIKYLE
Sbjct: 153 KESTWVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGMEISFKEKDIKYLE 212

Query: 121 FLFVYYMDDQIRKDHDWELFDRLSPRKRRNIINLNSGQLFEILVKDWICYLMFAFREKIP 180
           FLFVYYMDDQIRKDHDWELFDRLSPRKRRNIINLNSGQLFEILVKDWICYLMFAFREKIP
Sbjct: 213 FLFVYYMDDQIRKDHDWELFDRLSPRKRRNIINLNSGQLFEILVKDWICYLMFAFREKIP 272

Query: 181 IEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFHMWQFRQDLFFSWGKNP 240
           IEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFHMWQFRQDLFFSWGKNP
Sbjct: 273 IEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFHMWQFRQDLFFSWGKNP 332

Query: 241 HE 243
           HE
Sbjct: 333 HE 334

BLAST of Clc00G02700 vs. NCBI nr
Match: APW82676.1 (Ycf2 [Citrullus lanatus subsp. vulgaris] >APW82695.1 Ycf2 [Citrullus lanatus subsp. vulgaris])

HSP 1 Score: 515.0 bits (1325), Expect = 3.5e-142
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0

Query: 1   MVERKNLYLTGFLPIPMNFIGPRNDRLEESFGSSNINRLIVSLLYLPKGKKISESCFLDP 60
           MVERKNLYLTGFLPIPMNFIGPRNDRLEESFGSSNINRLIVSLLYLPKGKKISESCFLDP
Sbjct: 93  MVERKNLYLTGFLPIPMNFIGPRNDRLEESFGSSNINRLIVSLLYLPKGKKISESCFLDP 152

Query: 61  KESTWVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGMEISFKEKDIKYLE 120
           KESTWVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGMEISFKEKDIKYLE
Sbjct: 153 KESTWVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGMEISFKEKDIKYLE 212

Query: 121 FLFVYYMDDQIRKDHDWELFDRLSPRKRRNIINLNSGQLFEILVKDWICYLMFAFREKIP 180
           FLFVYYMDDQIRKDHDWELFDRLSPRKRRNIINLNSGQLFEILVKDWICYLMFAFREKIP
Sbjct: 213 FLFVYYMDDQIRKDHDWELFDRLSPRKRRNIINLNSGQLFEILVKDWICYLMFAFREKIP 272

Query: 181 IEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFHMWQFRQDLFFSWGKNP 240
           IEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFHMWQFRQDLFFSWGKNP
Sbjct: 273 IEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFHMWQFRQDLFFSWGKNP 332

Query: 241 HE 243
           HE
Sbjct: 333 HE 334

BLAST of Clc00G02700 vs. NCBI nr
Match: YP_009420838.1 (Ycf2 [Citrullus colocynthis] >YP_009420857.1 Ycf2 [Citrullus colocynthis] >YP_009431686.1 Ycf2 [Citrullus rehmii] >YP_009431705.1 Ycf2 [Citrullus rehmii] >ASP44531.1 Ycf2 [Citrullus colocynthis] >ASP44534.1 Ycf2 [Citrullus colocynthis] >ASY96311.1 Ycf2 [Citrullus rehmii] >ASY96314.1 Ycf2 [Citrullus rehmii])

HSP 1 Score: 512.7 bits (1319), Expect = 1.7e-141
Identity = 241/242 (99.59%), Postives = 241/242 (99.59%), Query Frame = 0

Query: 1   MVERKNLYLTGFLPIPMNFIGPRNDRLEESFGSSNINRLIVSLLYLPKGKKISESCFLDP 60
           MVERKNLYLTGFLPIPMNFIGPRND LEESFGSSNINRLIVSLLYLPKGKKISESCFLDP
Sbjct: 93  MVERKNLYLTGFLPIPMNFIGPRNDTLEESFGSSNINRLIVSLLYLPKGKKISESCFLDP 152

Query: 61  KESTWVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGMEISFKEKDIKYLE 120
           KESTWVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGMEISFKEKDIKYLE
Sbjct: 153 KESTWVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGMEISFKEKDIKYLE 212

Query: 121 FLFVYYMDDQIRKDHDWELFDRLSPRKRRNIINLNSGQLFEILVKDWICYLMFAFREKIP 180
           FLFVYYMDDQIRKDHDWELFDRLSPRKRRNIINLNSGQLFEILVKDWICYLMFAFREKIP
Sbjct: 213 FLFVYYMDDQIRKDHDWELFDRLSPRKRRNIINLNSGQLFEILVKDWICYLMFAFREKIP 272

Query: 181 IEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFHMWQFRQDLFFSWGKNP 240
           IEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFHMWQFRQDLFFSWGKNP
Sbjct: 273 IEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFHMWQFRQDLFFSWGKNP 332

Query: 241 HE 243
           HE
Sbjct: 333 HE 334

BLAST of Clc00G02700 vs. NCBI nr
Match: QZL38725.1 (Ycf2 protein [Citrullus ecirrhosus] >QZL38746.1 Ycf2 protein [Citrullus ecirrhosus])

HSP 1 Score: 512.7 bits (1319), Expect = 1.7e-141
Identity = 241/242 (99.59%), Postives = 241/242 (99.59%), Query Frame = 0

Query: 1   MVERKNLYLTGFLPIPMNFIGPRNDRLEESFGSSNINRLIVSLLYLPKGKKISESCFLDP 60
           MVERKNLYLTGFLPIPMNFIGPRND LEESFGSSNINRLIVSLLYLPKGKKISESCFLDP
Sbjct: 93  MVERKNLYLTGFLPIPMNFIGPRNDTLEESFGSSNINRLIVSLLYLPKGKKISESCFLDP 152

Query: 61  KESTWVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGMEISFKEKDIKYLE 120
           KESTWVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGMEISFKEKDIKYLE
Sbjct: 153 KESTWVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGMEISFKEKDIKYLE 212

Query: 121 FLFVYYMDDQIRKDHDWELFDRLSPRKRRNIINLNSGQLFEILVKDWICYLMFAFREKIP 180
           FLFVYYMDDQIRKDHDWELFDRLSPRKRRNIINLNSGQLFEILVKDWICYLMFAFREKIP
Sbjct: 213 FLFVYYMDDQIRKDHDWELFDRLSPRKRRNIINLNSGQLFEILVKDWICYLMFAFREKIP 272

Query: 181 IEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFHMWQFRQDLFFSWGKNP 240
           IEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFHMWQFRQDLFFSWGKNP
Sbjct: 273 IEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFHMWQFRQDLFFSWGKNP 332

Query: 241 HE 243
           HE
Sbjct: 333 HE 334

BLAST of Clc00G02700 vs. NCBI nr
Match: QZL38637.1 (Ycf2 protein [Citrullus naudinianus] >QZL38657.1 Ycf2 protein [Citrullus naudinianus])

HSP 1 Score: 512.7 bits (1319), Expect = 1.7e-141
Identity = 241/242 (99.59%), Postives = 241/242 (99.59%), Query Frame = 0

Query: 1   MVERKNLYLTGFLPIPMNFIGPRNDRLEESFGSSNINRLIVSLLYLPKGKKISESCFLDP 60
           MVERKNLYLTGFLPIPMNFIGPRND LEESFGSSNINRLIVSLLYLPKGKKISESCFLDP
Sbjct: 93  MVERKNLYLTGFLPIPMNFIGPRNDTLEESFGSSNINRLIVSLLYLPKGKKISESCFLDP 152

Query: 61  KESTWVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGMEISFKEKDIKYLE 120
           KESTWVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGMEISFKEKDIKYLE
Sbjct: 153 KESTWVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGMEISFKEKDIKYLE 212

Query: 121 FLFVYYMDDQIRKDHDWELFDRLSPRKRRNIINLNSGQLFEILVKDWICYLMFAFREKIP 180
           FLFVYYMDDQIRKDHDWELFDRLSPRKRRNIINLNSGQLFEILVKDWICYLMFAFREKIP
Sbjct: 213 FLFVYYMDDQIRKDHDWELFDRLSPRKRRNIINLNSGQLFEILVKDWICYLMFAFREKIP 272

Query: 181 IEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFHMWQFRQDLFFSWGKNP 240
           IEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFHMWQFRQDLFFSWGKNP
Sbjct: 273 IEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFHMWQFRQDLFFSWGKNP 332

Query: 241 HE 243
           HE
Sbjct: 333 HE 334

BLAST of Clc00G02700 vs. ExPASy Swiss-Prot
Match: Q09WV7 (Protein Ycf2 OS=Morus indica OX=248361 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 502.7 bits (1293), Expect = 2.4e-141
Identity = 235/242 (97.11%), Postives = 237/242 (97.93%), Query Frame = 0

Query: 1   MVERKNLYLTGFLPIPMNFIGPRNDRLEESFGSSNINRLIVSLLYLPKGKKISESCFLDP 60
           MVERKNLYLTG LPIPMNFIGPRND LEESFGSSNINRLIVSLLYLPKGKKISESCFLDP
Sbjct: 99  MVERKNLYLTGLLPIPMNFIGPRNDTLEESFGSSNINRLIVSLLYLPKGKKISESCFLDP 158

Query: 61  KESTWVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGMEISFKEKDIKYLE 120
           KESTWVLPITKKCIMPESNWGSRWWRNW+GKKRDSSCKISNETV G+EISFKEKDIKYLE
Sbjct: 159 KESTWVLPITKKCIMPESNWGSRWWRNWLGKKRDSSCKISNETVTGIEISFKEKDIKYLE 218

Query: 121 FLFVYYMDDQIRKDHDWELFDRLSPRKRRNIINLNSGQLFEILVKDWICYLMFAFREKIP 180
           FLFVYYMDD IRKDHDWELFDRLSPRKRRNIINLNSGQLFEILVKDWICYLMFAFREKIP
Sbjct: 219 FLFVYYMDDPIRKDHDWELFDRLSPRKRRNIINLNSGQLFEILVKDWICYLMFAFREKIP 278

Query: 181 IEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFHMWQFRQDLFFSWGKNP 240
           IE EGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFHMWQFRQDLFFSWGKNP
Sbjct: 279 IEAEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFHMWQFRQDLFFSWGKNP 338

Query: 241 HE 243
           HE
Sbjct: 339 HE 340

BLAST of Clc00G02700 vs. ExPASy Swiss-Prot
Match: Q0ZIV6 (Protein Ycf2 OS=Vitis vinifera OX=29760 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 493.0 bits (1268), Expect = 1.9e-138
Identity = 233/242 (96.28%), Postives = 234/242 (96.69%), Query Frame = 0

Query: 1   MVERKNLYLTGFLPIPMNFIGPRNDRLEESFGSSNINRLIVSLLYLPKGKKISESCFLDP 60
           MVERKNLYLTG LPIPMN IGPRND LEESFGSSNINRLIVSLLYLPKGKKISESCFLDP
Sbjct: 97  MVERKNLYLTGLLPIPMNSIGPRNDTLEESFGSSNINRLIVSLLYLPKGKKISESCFLDP 156

Query: 61  KESTWVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGMEISFKEKDIKYLE 120
           KESTWVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAG+EISFKEKDIKYLE
Sbjct: 157 KESTWVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGIEISFKEKDIKYLE 216

Query: 121 FLFVYYMDDQIRKDHDWELFDRLSPRKRRNIINLNSGQLFEILVKDWICYLMFAFREKIP 180
           FLFVYYMDD I KDHDWELFDRLSPRKRRNIINLNSGQLFEILVK WICYLM AFREKIP
Sbjct: 217 FLFVYYMDDPIHKDHDWELFDRLSPRKRRNIINLNSGQLFEILVKHWICYLMSAFREKIP 276

Query: 181 IEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFHMWQFRQDLFFSWGKNP 240
           IEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFHMWQFRQDLF SWGKNP
Sbjct: 277 IEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFHMWQFRQDLFVSWGKNP 336

Query: 241 HE 243
           HE
Sbjct: 337 HE 338

BLAST of Clc00G02700 vs. ExPASy Swiss-Prot
Match: Q2L949 (Protein Ycf2 OS=Gossypium hirsutum OX=3635 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 491.1 bits (1263), Expect = 7.1e-138
Identity = 233/242 (96.28%), Postives = 234/242 (96.69%), Query Frame = 0

Query: 1   MVERKNLYLTGFLPIPMNFIGPRNDRLEESFGSSNINRLIVSLLYLPKGKKISESCFLDP 60
           MVERKNLYLTG LPIPMN IGPRND LEESFGSSNINRLIVSLLYLPKGKKISESCFLDP
Sbjct: 97  MVERKNLYLTGLLPIPMNSIGPRNDTLEESFGSSNINRLIVSLLYLPKGKKISESCFLDP 156

Query: 61  KESTWVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGMEISFKEKDIKYLE 120
           KESTWVLPITKKCIMPESN GSRWWRNWIGKKRDSSCKISNETVAG+EISFKEKDIKYLE
Sbjct: 157 KESTWVLPITKKCIMPESNRGSRWWRNWIGKKRDSSCKISNETVAGIEISFKEKDIKYLE 216

Query: 121 FLFVYYMDDQIRKDHDWELFDRLSPRKRRNIINLNSGQLFEILVKDWICYLMFAFREKIP 180
           FLFVYYMDD IRKDHDWELFDRLSP KRRNIINLNSGQLFEILVKDWICYLMFAFREKIP
Sbjct: 217 FLFVYYMDDSIRKDHDWELFDRLSPSKRRNIINLNSGQLFEILVKDWICYLMFAFREKIP 276

Query: 181 IEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFHMWQFRQDLFFSWGKNP 240
           IEVEGFFKQQGAGSTIQSNDIEHVSHLFSR KWAISLQNCAQFHMWQFRQDLF SWGKNP
Sbjct: 277 IEVEGFFKQQGAGSTIQSNDIEHVSHLFSRGKWAISLQNCAQFHMWQFRQDLFVSWGKNP 336

Query: 241 HE 243
           HE
Sbjct: 337 HE 338

BLAST of Clc00G02700 vs. ExPASy Swiss-Prot
Match: A0ZZ78 (Protein Ycf2 OS=Gossypium barbadense OX=3634 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 488.4 bits (1256), Expect = 4.6e-137
Identity = 232/242 (95.87%), Postives = 233/242 (96.28%), Query Frame = 0

Query: 1   MVERKNLYLTGFLPIPMNFIGPRNDRLEESFGSSNINRLIVSLLYLPKGKKISESCFLDP 60
           MVERKNLYLTG LPIPMN IGPRND LEESFGSSNINRLIVSLLYLPKGKKISESCFLDP
Sbjct: 97  MVERKNLYLTGLLPIPMNSIGPRNDTLEESFGSSNINRLIVSLLYLPKGKKISESCFLDP 156

Query: 61  KESTWVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGMEISFKEKDIKYLE 120
           KESTWVLPITKKCIMPESN  SRWWRNWIGKKRDSSCKISNETVAG+EISFKEKDIKYLE
Sbjct: 157 KESTWVLPITKKCIMPESNRDSRWWRNWIGKKRDSSCKISNETVAGIEISFKEKDIKYLE 216

Query: 121 FLFVYYMDDQIRKDHDWELFDRLSPRKRRNIINLNSGQLFEILVKDWICYLMFAFREKIP 180
           FLFVYYMDD IRKDHDWELFDRLSP KRRNIINLNSGQLFEILVKDWICYLMFAFREKIP
Sbjct: 217 FLFVYYMDDSIRKDHDWELFDRLSPSKRRNIINLNSGQLFEILVKDWICYLMFAFREKIP 276

Query: 181 IEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFHMWQFRQDLFFSWGKNP 240
           IEVEGFFKQQGAGSTIQSNDIEHVSHLFSR KWAISLQNCAQFHMWQFRQDLF SWGKNP
Sbjct: 277 IEVEGFFKQQGAGSTIQSNDIEHVSHLFSRGKWAISLQNCAQFHMWQFRQDLFVSWGKNP 336

Query: 241 HE 243
           HE
Sbjct: 337 HE 338

BLAST of Clc00G02700 vs. ExPASy Swiss-Prot
Match: Q14F97 (Protein Ycf2 OS=Populus alba OX=43335 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 486.1 bits (1250), Expect = 2.3e-136
Identity = 231/242 (95.45%), Postives = 232/242 (95.87%), Query Frame = 0

Query: 1   MVERKNLYLTGFLPIPMNFIGPRNDRLEESFGSSNINRLIVSLLYLPKGKKISESCFLDP 60
           MVERKNLYLTG LPIPMN IGPRND LEESFGSSNINRLIVSLLYLPKGKKISES FLDP
Sbjct: 97  MVERKNLYLTGLLPIPMNSIGPRNDTLEESFGSSNINRLIVSLLYLPKGKKISESRFLDP 156

Query: 61  KESTWVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGMEISFKEKDIKYLE 120
           KESTWVLPITKKCIM ESNWGSRWWRNWIGKKRDSSCKISNETVAG+EISFKEKDIKYLE
Sbjct: 157 KESTWVLPITKKCIMSESNWGSRWWRNWIGKKRDSSCKISNETVAGIEISFKEKDIKYLE 216

Query: 121 FLFVYYMDDQIRKDHDWELFDRLSPRKRRNIINLNSGQLFEILVKDWICYLMFAFREKIP 180
           FLFVYYMDD IRKDHDWELFDRLSPRK RNIINLNSGQLFEILVKDWICYLMFAFREKIP
Sbjct: 217 FLFVYYMDDPIRKDHDWELFDRLSPRKGRNIINLNSGQLFEILVKDWICYLMFAFREKIP 276

Query: 181 IEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFHMWQFRQDLFFSWGKNP 240
           IEVEGFFKQQGAGSTIQSNDIEHVSHLFSR KWAISLQNCAQFHMWQFRQDLF SWG NP
Sbjct: 277 IEVEGFFKQQGAGSTIQSNDIEHVSHLFSRKKWAISLQNCAQFHMWQFRQDLFVSWGNNP 336

Query: 241 HE 243
           HE
Sbjct: 337 HE 338

BLAST of Clc00G02700 vs. ExPASy TrEMBL
Match: A0A1P8LED5 (Protein Ycf2 OS=Citrullus mucosospermus OX=519315 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 515.0 bits (1325), Expect = 1.7e-142
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0

Query: 1   MVERKNLYLTGFLPIPMNFIGPRNDRLEESFGSSNINRLIVSLLYLPKGKKISESCFLDP 60
           MVERKNLYLTGFLPIPMNFIGPRNDRLEESFGSSNINRLIVSLLYLPKGKKISESCFLDP
Sbjct: 93  MVERKNLYLTGFLPIPMNFIGPRNDRLEESFGSSNINRLIVSLLYLPKGKKISESCFLDP 152

Query: 61  KESTWVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGMEISFKEKDIKYLE 120
           KESTWVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGMEISFKEKDIKYLE
Sbjct: 153 KESTWVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGMEISFKEKDIKYLE 212

Query: 121 FLFVYYMDDQIRKDHDWELFDRLSPRKRRNIINLNSGQLFEILVKDWICYLMFAFREKIP 180
           FLFVYYMDDQIRKDHDWELFDRLSPRKRRNIINLNSGQLFEILVKDWICYLMFAFREKIP
Sbjct: 213 FLFVYYMDDQIRKDHDWELFDRLSPRKRRNIINLNSGQLFEILVKDWICYLMFAFREKIP 272

Query: 181 IEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFHMWQFRQDLFFSWGKNP 240
           IEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFHMWQFRQDLFFSWGKNP
Sbjct: 273 IEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFHMWQFRQDLFFSWGKNP 332

Query: 241 HE 243
           HE
Sbjct: 333 HE 334

BLAST of Clc00G02700 vs. ExPASy TrEMBL
Match: A0A343A8H4 (Protein Ycf2 OS=Citrullus lanatus OX=3654 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 515.0 bits (1325), Expect = 1.7e-142
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0

Query: 1   MVERKNLYLTGFLPIPMNFIGPRNDRLEESFGSSNINRLIVSLLYLPKGKKISESCFLDP 60
           MVERKNLYLTGFLPIPMNFIGPRNDRLEESFGSSNINRLIVSLLYLPKGKKISESCFLDP
Sbjct: 93  MVERKNLYLTGFLPIPMNFIGPRNDRLEESFGSSNINRLIVSLLYLPKGKKISESCFLDP 152

Query: 61  KESTWVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGMEISFKEKDIKYLE 120
           KESTWVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGMEISFKEKDIKYLE
Sbjct: 153 KESTWVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGMEISFKEKDIKYLE 212

Query: 121 FLFVYYMDDQIRKDHDWELFDRLSPRKRRNIINLNSGQLFEILVKDWICYLMFAFREKIP 180
           FLFVYYMDDQIRKDHDWELFDRLSPRKRRNIINLNSGQLFEILVKDWICYLMFAFREKIP
Sbjct: 213 FLFVYYMDDQIRKDHDWELFDRLSPRKRRNIINLNSGQLFEILVKDWICYLMFAFREKIP 272

Query: 181 IEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFHMWQFRQDLFFSWGKNP 240
           IEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFHMWQFRQDLFFSWGKNP
Sbjct: 273 IEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFHMWQFRQDLFFSWGKNP 332

Query: 241 HE 243
           HE
Sbjct: 333 HE 334

BLAST of Clc00G02700 vs. ExPASy TrEMBL
Match: A0A1P8LDT8 (Ycf2 OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=ycf2 PE=4 SV=1)

HSP 1 Score: 515.0 bits (1325), Expect = 1.7e-142
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0

Query: 1   MVERKNLYLTGFLPIPMNFIGPRNDRLEESFGSSNINRLIVSLLYLPKGKKISESCFLDP 60
           MVERKNLYLTGFLPIPMNFIGPRNDRLEESFGSSNINRLIVSLLYLPKGKKISESCFLDP
Sbjct: 93  MVERKNLYLTGFLPIPMNFIGPRNDRLEESFGSSNINRLIVSLLYLPKGKKISESCFLDP 152

Query: 61  KESTWVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGMEISFKEKDIKYLE 120
           KESTWVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGMEISFKEKDIKYLE
Sbjct: 153 KESTWVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGMEISFKEKDIKYLE 212

Query: 121 FLFVYYMDDQIRKDHDWELFDRLSPRKRRNIINLNSGQLFEILVKDWICYLMFAFREKIP 180
           FLFVYYMDDQIRKDHDWELFDRLSPRKRRNIINLNSGQLFEILVKDWICYLMFAFREKIP
Sbjct: 213 FLFVYYMDDQIRKDHDWELFDRLSPRKRRNIINLNSGQLFEILVKDWICYLMFAFREKIP 272

Query: 181 IEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFHMWQFRQDLFFSWGKNP 240
           IEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFHMWQFRQDLFFSWGKNP
Sbjct: 273 IEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFHMWQFRQDLFFSWGKNP 332

Query: 241 HE 243
           HE
Sbjct: 333 HE 334

BLAST of Clc00G02700 vs. ExPASy TrEMBL
Match: A0A1P8LF93 (Protein Ycf2 OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 515.0 bits (1325), Expect = 1.7e-142
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0

Query: 1   MVERKNLYLTGFLPIPMNFIGPRNDRLEESFGSSNINRLIVSLLYLPKGKKISESCFLDP 60
           MVERKNLYLTGFLPIPMNFIGPRNDRLEESFGSSNINRLIVSLLYLPKGKKISESCFLDP
Sbjct: 93  MVERKNLYLTGFLPIPMNFIGPRNDRLEESFGSSNINRLIVSLLYLPKGKKISESCFLDP 152

Query: 61  KESTWVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGMEISFKEKDIKYLE 120
           KESTWVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGMEISFKEKDIKYLE
Sbjct: 153 KESTWVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGMEISFKEKDIKYLE 212

Query: 121 FLFVYYMDDQIRKDHDWELFDRLSPRKRRNIINLNSGQLFEILVKDWICYLMFAFREKIP 180
           FLFVYYMDDQIRKDHDWELFDRLSPRKRRNIINLNSGQLFEILVKDWICYLMFAFREKIP
Sbjct: 213 FLFVYYMDDQIRKDHDWELFDRLSPRKRRNIINLNSGQLFEILVKDWICYLMFAFREKIP 272

Query: 181 IEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFHMWQFRQDLFFSWGKNP 240
           IEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFHMWQFRQDLFFSWGKNP
Sbjct: 273 IEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFHMWQFRQDLFFSWGKNP 332

Query: 241 HE 243
           HE
Sbjct: 333 HE 334

BLAST of Clc00G02700 vs. ExPASy TrEMBL
Match: A0A249RX51 (Protein Ycf2 OS=Citrullus amarus OX=1567104 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 515.0 bits (1325), Expect = 1.7e-142
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0

Query: 1   MVERKNLYLTGFLPIPMNFIGPRNDRLEESFGSSNINRLIVSLLYLPKGKKISESCFLDP 60
           MVERKNLYLTGFLPIPMNFIGPRNDRLEESFGSSNINRLIVSLLYLPKGKKISESCFLDP
Sbjct: 93  MVERKNLYLTGFLPIPMNFIGPRNDRLEESFGSSNINRLIVSLLYLPKGKKISESCFLDP 152

Query: 61  KESTWVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGMEISFKEKDIKYLE 120
           KESTWVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGMEISFKEKDIKYLE
Sbjct: 153 KESTWVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGMEISFKEKDIKYLE 212

Query: 121 FLFVYYMDDQIRKDHDWELFDRLSPRKRRNIINLNSGQLFEILVKDWICYLMFAFREKIP 180
           FLFVYYMDDQIRKDHDWELFDRLSPRKRRNIINLNSGQLFEILVKDWICYLMFAFREKIP
Sbjct: 213 FLFVYYMDDQIRKDHDWELFDRLSPRKRRNIINLNSGQLFEILVKDWICYLMFAFREKIP 272

Query: 181 IEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFHMWQFRQDLFFSWGKNP 240
           IEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFHMWQFRQDLFFSWGKNP
Sbjct: 273 IEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFHMWQFRQDLFFSWGKNP 332

Query: 241 HE 243
           HE
Sbjct: 333 HE 334

BLAST of Clc00G02700 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 464.5 bits (1194), Expect = 5.1e-131
Identity = 220/242 (90.91%), Postives = 223/242 (92.15%), Query Frame = 0

Query: 1   MVERKNLYLTGFLPIPMNFIGPRNDRLEESFGSSNINRLIVSLLYLPKGKKISESCFLDP 60
           MVE KNLYL G LPIPMN IGPRND  EESFGS NINRLIVSLLYL KGKKISESCF DP
Sbjct: 97  MVESKNLYLKGLLPIPMNSIGPRNDTSEESFGSCNINRLIVSLLYLTKGKKISESCFRDP 156

Query: 61  KESTWVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGMEISFKEKDIKYLE 120
           KESTWVLPIT+KCIMPESNW SRWWRNWIGKKR   CKISNETVAG++ISFKEKDIKYLE
Sbjct: 157 KESTWVLPITQKCIMPESNWSSRWWRNWIGKKRGFCCKISNETVAGIDISFKEKDIKYLE 216

Query: 121 FLFVYYMDDQIRKDHDWELFDRLSPRKRRNIINLNSGQLFEILVKDWICYLMFAFREKIP 180
           FLFVYYMDD IRK HDWELFDRLSP KRRNIINLNSGQLFEILVKDWICYLMFAFREKIP
Sbjct: 217 FLFVYYMDDPIRKGHDWELFDRLSPSKRRNIINLNSGQLFEILVKDWICYLMFAFREKIP 276

Query: 181 IEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFHMWQFRQDLFFSWGKNP 240
           IEVEGF KQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFHMWQF QDLF SWGKNP
Sbjct: 277 IEVEGFCKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFHMWQFHQDLFVSWGKNP 336

Query: 241 HE 243
           HE
Sbjct: 337 HE 338

BLAST of Clc00G02700 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 464.5 bits (1194), Expect = 5.1e-131
Identity = 220/242 (90.91%), Postives = 223/242 (92.15%), Query Frame = 0

Query: 1   MVERKNLYLTGFLPIPMNFIGPRNDRLEESFGSSNINRLIVSLLYLPKGKKISESCFLDP 60
           MVE KNLYL G LPIPMN IGPRND  EESFGS NINRLIVSLLYL KGKKISESCF DP
Sbjct: 97  MVESKNLYLKGLLPIPMNSIGPRNDTSEESFGSCNINRLIVSLLYLTKGKKISESCFRDP 156

Query: 61  KESTWVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGMEISFKEKDIKYLE 120
           KESTWVLPIT+KCIMPESNW SRWWRNWIGKKR   CKISNETVAG++ISFKEKDIKYLE
Sbjct: 157 KESTWVLPITQKCIMPESNWSSRWWRNWIGKKRGFCCKISNETVAGIDISFKEKDIKYLE 216

Query: 121 FLFVYYMDDQIRKDHDWELFDRLSPRKRRNIINLNSGQLFEILVKDWICYLMFAFREKIP 180
           FLFVYYMDD IRK HDWELFDRLSP KRRNIINLNSGQLFEILVKDWICYLMFAFREKIP
Sbjct: 217 FLFVYYMDDPIRKGHDWELFDRLSPSKRRNIINLNSGQLFEILVKDWICYLMFAFREKIP 276

Query: 181 IEVEGFFKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFHMWQFRQDLFFSWGKNP 240
           IEVEGF KQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFHMWQF QDLF SWGKNP
Sbjct: 277 IEVEGFCKQQGAGSTIQSNDIEHVSHLFSRNKWAISLQNCAQFHMWQFHQDLFVSWGKNP 336

Query: 241 HE 243
           HE
Sbjct: 337 HE 338

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
YP_009326033.13.5e-142100.00Ycf2 [Citrullus lanatus] >YP_009326052.1 Ycf2 [Citrullus lanatus] >YP_009348075.... [more]
APW82676.13.5e-142100.00Ycf2 [Citrullus lanatus subsp. vulgaris] >APW82695.1 Ycf2 [Citrullus lanatus sub... [more]
YP_009420838.11.7e-14199.59Ycf2 [Citrullus colocynthis] >YP_009420857.1 Ycf2 [Citrullus colocynthis] >YP_00... [more]
QZL38725.11.7e-14199.59Ycf2 protein [Citrullus ecirrhosus] >QZL38746.1 Ycf2 protein [Citrullus ecirrhos... [more]
QZL38637.11.7e-14199.59Ycf2 protein [Citrullus naudinianus] >QZL38657.1 Ycf2 protein [Citrullus naudini... [more]
Match NameE-valueIdentityDescription
Q09WV72.4e-14197.11Protein Ycf2 OS=Morus indica OX=248361 GN=ycf2-A PE=3 SV=1[more]
Q0ZIV61.9e-13896.28Protein Ycf2 OS=Vitis vinifera OX=29760 GN=ycf2-A PE=3 SV=1[more]
Q2L9497.1e-13896.28Protein Ycf2 OS=Gossypium hirsutum OX=3635 GN=ycf2-A PE=3 SV=1[more]
A0ZZ784.6e-13795.87Protein Ycf2 OS=Gossypium barbadense OX=3634 GN=ycf2-A PE=3 SV=1[more]
Q14F972.3e-13695.45Protein Ycf2 OS=Populus alba OX=43335 GN=ycf2-A PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A1P8LED51.7e-142100.00Protein Ycf2 OS=Citrullus mucosospermus OX=519315 GN=ycf2 PE=3 SV=1[more]
A0A343A8H41.7e-142100.00Protein Ycf2 OS=Citrullus lanatus OX=3654 GN=ycf2 PE=3 SV=1[more]
A0A1P8LDT81.7e-142100.00Ycf2 OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=ycf2 PE=4 SV=1[more]
A0A1P8LF931.7e-142100.00Protein Ycf2 OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=ycf2 PE=3 SV=1[more]
A0A249RX511.7e-142100.00Protein Ycf2 OS=Citrullus amarus OX=1567104 GN=ycf2 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
ATCG00860.15.1e-13190.91Chloroplast Ycf2;ATPase, AAA type, core [more]
ATCG01280.15.1e-13190.91Chloroplast Ycf2;ATPase, AAA type, core [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008543Uncharacterised protein family Ycf2PFAMPF05695DUF825coord: 1..242
e-value: 1.3E-163
score: 546.2
NoneNo IPR availablePANTHERPTHR33078PROTEIN YCF2-RELATEDcoord: 25..242
NoneNo IPR availablePANTHERPTHR33078:SF69BNAA06G19310D PROTEINcoord: 25..242

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc00G02700.1Clc00G02700.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005524 ATP binding
molecular_function GO:0016887 ATP hydrolysis activity