Clc00G02660 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc00G02660
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	DNA-directed RNA polymerase subunit alpha
Location	ClcCtg023: 69418 .. 73605 (-)
RNA-Seq Expression	Clc00G02660
Synteny	Clc00G02660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGAATATCTTATCGAGGCAATCGGATTTGCTTCGGTAGATACGCTATTCAGGCACTTGAACCCGCTTGGATCACATCTAGACAAATCGAAGCGGGACGAAGGGCAATGACACGAAATGCACGACGCGGCGGAAAAATATGGGTACGTATATTTCCAGACAAACCCGTTACACTAAGACCCACAGAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAACCAGGTAGAATACTTTATGAAATGAGTGGAGTAGCTGAAAATATAGCCAGAAAAGCTATTTCAATAGCGGCATCCAAAATGCCTATACGAACCCAATTCATTACTTCGGGATAGAAATGTAGAATCAAAGGACAGCGGTCTTTGTTTGAGATGAAAAAAAAACAATTGCAGATTTCTTTTTTTTTGGAAAAACAATATTTCTTTTTTTTTTTTTTACTTCGCCCTTTGCATTGAAAGAAAAGATTCCAAAATAATATGATTCAACCTCAAACCCTTTTGAATGTAGCAGATAACAGCGGAGCCCGAGAATTGATGTGTATTCGAATCATAGGGGCTAGTAATCGACGATATGCTCATATTGGTGACGTTATTGTTGCTGTAATCAAGAAAGCCGTCCCAAATACACCTCTAGAAAGATCAGAAGTGATCAGAGCTGTAATTGTACGTACTTGTAAAGAACTCAAACGAGAAAACGGTATGATAATACGATATGATGACAATGCTGCGGTTGTTATTGATCAAGAAGGAAATCCAAAAGGAACTAGAATTTTTGGTGCGATTGCCCGAGAATTGAGACAGTTAAATTTCACTAAAATAATTTCATTAGCACCTGAAGTATTATAAGATGAGACCGTGAGATAGTTATAGTATTTGAATGAAATTAATTAGTAGATTGTGTATCACGTATATACCTTTTTAAATTCATAACTATTTAATAAAAAAGACTGTTGATTAGATCAAAATTTAAAGTAACCAATAATTTTGTTTATCATGGGTAAGGACACTATTGCTAACATAATAACCTCTATTCGCAATGCTGACATGAATAGAAAAGGAATGGTTCGAATACCATCTACTAACATCACCGAAAACATTGTTAAAATACTTTTACGAGAAGGTTTTATTGAAAACGTACGGAAACATCGGGAAAGCAACAAGGATTTTTGGGTTTTAACCCTACGACATAGAAGAAATAGGAAAGGACCATATAAAACGATTTTAAATTTAAAACGGATCAGTCGACCTGGTCTCCGAATATATTCTAACTATCAACAAATTCCTAGAATTTTAGGCGGAATGGGCATTGTAATTCTTTCTACTTCTCGGGGTATAATGACAGACCGAGAAGCTCGACTACAGGGAATCGGCGGCGAAATTTTGTGTTATATATGGTAATCTTTATGATATTCGAATTATACACAGAACTTCCCTATTTGTAAAAAAAAAAAAAGAGAAGAGGTAGGTTTCTAATACCACTCCCCCTTCATTAATTGATACTTTGAAAGATGTTTCATCTGGAATGAAAGAACAAAAAAGGAGTTCTGAAGGTTTAATTACTGAATCACTTACCAATGGTATGTTTTGGGTTTGTTTAGATAATGAGGATCCAATTCTAGGTTACGTTTCAGGAAGGATTCGACATAGTTTTATCCATATACTAGGTCATAGAGAGTCAAACTTTCAGTAAGTTGTTACGATTCAACCAGAACCAAAGGGCGTATAATTTAGAGACTACGAAACAAAGGATTAGGTGAAGTAGTCTTTTCACGGGCAATATTCTTTTTTTGTAGGGATACAATTCGAAATAGAAAATTTAAAGAAACTTATTTTCTTCCAATAAGTAGATTCGGAATTAAGGTAAGGAATGACAAATATGAAAATAAGGGCCTCCATTCGGAAAATTTGTGAAAAATGTCGCCTGATCCGTAGGCGGAGACGAATTATGGTAATTTGTTCCAATCCGAGACATAAACAAAGACAAGGATAATCTTTATAAAAAAAGGACCCCTAAAGGCCACCCACAATATACACATAAAAATCAATTAAAGGATCCGTTTTGACATGAAATGGATATATCCATATATCTCTGACTTAGATTTATGAGATGGTAAAATATGGCAAAACCCATACCAAGAATCGGTTCACGTAGAAATGGACGTATTAGCTCACGTAAAAGTACGCGTAGAATACCAAAGGGCGTTATTCATGTTCAAGCAAGTTTCAACAATACAATTGTGACTGTTACAGATGTACGGGGTCGGGTAATTTCTTGGTCCTCCGCCGGTACGTGTGGATTCAAAGGTACAAGAAGAGGGACACCATTTGCCGCTCAAACCGCAGCAGGAAATGCTATTCGGGCAGTAGTGGATCAAGGTATGCAACGAGCCGAAGTTATGATAAAGGGCCCTGGTCTCGGAAGAGATGCAGCATTAAGAGCTATCCGTAGAAGCGGTATACTATTAAGTTTCATACGGGATGTAACCCCTATGCCACATAATGGCTGTAGGCCCCCTAAAAAACGACGTGTGTAAAAATAAACATTGAAGATAAATTTCAAGAGAAATAAATAATTCAATGATTTGATCAAAAAATATTACTATGGTTCGAGAGAAAATAAGAGTATTGACTCGGACACTAAAGTGGAAGTGTGTTGAATCAAGAGCAGACAGTAAGCGTCTTTATTATGGACGCTTTATTCTGTCTCCACTTATGAAGGGGCAAGCGGATACTATAGGCATTGCGATGCGAAAAGCTTTACTTGGAGAAATAGAGGGAACATGTATCACACGTGCAAAATCTGAAAAAATCCCACATGAATACTCTACCATAGTCGGTATTCAAGAATCAGTACATGAAATTTTAATGAATTTGAAAGAAATTGTATTGAGAAGTAATCTGTATGGAACTCGTGATGCGTCTATTTGTGTCAAGGGTCCTGGCTGCGTAACTGCTCAAGACATCATCTTACCACCTTCGGTGGAAATCGTTGATAATACGCAGCATATAGCTAACCTAACGGAACCAATTAATTTGTGTATTGAATTAAAGATCGAGAGGAATCGCGGATATCGTATACAAACGCCAAATAATTTTCAAGACGCAAGTTATCCTATAGATGCTATATTCATGCCTGTTCGAAATGCGAATCATAGTATTCATTCTTATGTAAATGGGAATGAAAAACAAGAGATACTTTTTCTCGAAATATGGACCAATGGAAGTTTAACTCCTAAAGAAGCACTTCATGAAGCCTCTCGGAATTTGATTGATTTATTTATTCCTTTTTTACATGCGGAAGAAGAAAAAGAAAACTTCCATTTAAAAAACAATAAACAGAAAGTTACTTTACCCCTTTTTACTTTTCATGAGAAATTGGCTAAACTAAGGAAAAAGAAAAAAGAAATAGCATTAAAATATATTTTTATTGACCAATCAGAATTGCCTCCTAGGATCTATAATTGCCTCAAAAGGTCCAATATACATACATTATTTGACCTTTTGAATAATAGTCCAGACGAACTTATGAAAATAAAACATTTTCGCATAGAAGACGTAAAACATATATTAGACATTCTCGAAATGGAAAAGAATTTTGCATAAATTTGAAATCCATTGGATTTTTTTGTAGAAAAACTTTATAAAAAAAAACAAAAATGAAGTTTGAATCTTTAACAGAATCCGTATACTCAAAATAAATCAAAAATTTCATTAAATAAATATGTGTATCTAGGGGTAATTCACTTTGAAGCAACTATTCCCTAGATACACACGTCGTGATATTTTAGTGATATTTTATTTATTTCACAATTGAATCAATTTAAAAAAGACCTAAAGTTAGGGATTTATCAATCGGTAATGTTGCTCCAATACCCAACCAAAGGGCTACTGCGGTACCAATCAAAAAGACGGTTGTCGCTACTGGACGACGAAATGGATTTTGGAATTTATTGACATTCTCCAAAAACGGTACAGTTAATAATCCCGCCGGTACAGAAACCATTAAAAGAACACCCAATAACTTATTTGGCACTGTACGAAGTATTTGAAATACGGGAAAGAAATACCATTCCGGCAATATTTCCAAAGGAGTTGCAAATGGATCTGCGGGTTCACCAATCATTGATGGTTCTAGGACCGCTAAGCCCACGTTACATGCAATAG

mRNA sequence

ATGAAAGGAATATCTTATCGAGGCAATCGGATTTGCTTCGGTAGATACGCTATTCAGGCACTTGAACCCGCTTGGATCACATCTAGACAAATCGAAGCGGGACGAAGGGCAATGACACGAAATGCACGACGCGGCGGAAAAATATGGGTACGTATATTTCCAGACAAACCCGTTACACTAAGACCCACAGAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAACCAGATAACAGCGGAGCCCGAGAATTGATGTGTATTCGAATCATAGGGGCTAGTAATCGACGATATGCTCATATTGGTGACGTTATTGTTGCTGTAATCAAGAAAGCCGTCCCAAATACACCTCTAGAAAGATCAGAAGTGATCAGAGCTGTAATTGTACGTACTTGTAAAGAACTCAAACGAGAAAACGGTATGATAATACGATATGATGACAATGCTGCGGTTGTTATTGATCAAGAAGGAAATCCAAAAGGAACTAGAATTTTTGATGTACGGGGTCGGGTAATTTCTTGGTCCTCCGCCGGTACGTGTGGATTCAAAGGTACAAGAAGAGGGACACCATTTGCCGCTCAAACCGCAGCAGGAAATGCTATTCGGGCAGTAGTGGATCAAGGTATGCAACGAGCCGAAGTTATGATAAAGGGCCCTGGTCTCGGAAGAGATGCAGCATTAAGAGCTATCCGTAGAAGCGACAGTAAGCGTCTTTATTATGGACGCTTTATTCTGTCTCCACTTATGAAGGGGCAAGCGGATACTATAGGCATTGCGATGCGAAAAGCTTTACTTGGAGAAATAGAGGGAACATGTATCACACGTGCAAAATCTGAAAAAATCCCACATGAATACTCTACCATAGTCGGTATTCAAGAATCAGTACATGAAATTTTAATGAATTTGAAAGAAATTGTATTGAGAAGTAATCTGTATGGAACTCGTGATGCGTCTATTTGTGTCAAGGGTCCTGGCTGCGTAACTGCTCAAGACATCATCTTACCACCTTCGGTGGAAATCGTTGATAATACGCAGCATATAGCTAACCTAACGGAACCAATTAATTTGTGTATTGAATTAAAGATCGAGAGGAATCGCGGATATCGTATACAAACGCCAAATAATTTTCAAGACGCAAGTTATCCTATAGATGCTATATTCATGCCTGTTCGAAATGCGAATCATAGTATTCATTCTTATTTAATAATCCCGCCGGTACAGAAACCATTAAAAGAACACCCAATAACTTATTTGGCACTGTACGAAGTATTTGAAATACGGGAAAGAAATACCATTCCGGCAATATTTCCAAAGGAGTTGCAAATGGATCTGCGGGTTCACCAATCATTGATGGTTCTAGGACCGCTAAGCCCACGTTACATGCAATAG

Coding sequence (CDS)

ATGAAAGGAATATCTTATCGAGGCAATCGGATTTGCTTCGGTAGATACGCTATTCAGGCACTTGAACCCGCTTGGATCACATCTAGACAAATCGAAGCGGGACGAAGGGCAATGACACGAAATGCACGACGCGGCGGAAAAATATGGGTACGTATATTTCCAGACAAACCCGTTACACTAAGACCCACAGAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAACCAGATAACAGCGGAGCCCGAGAATTGATGTGTATTCGAATCATAGGGGCTAGTAATCGACGATATGCTCATATTGGTGACGTTATTGTTGCTGTAATCAAGAAAGCCGTCCCAAATACACCTCTAGAAAGATCAGAAGTGATCAGAGCTGTAATTGTACGTACTTGTAAAGAACTCAAACGAGAAAACGGTATGATAATACGATATGATGACAATGCTGCGGTTGTTATTGATCAAGAAGGAAATCCAAAAGGAACTAGAATTTTTGATGTACGGGGTCGGGTAATTTCTTGGTCCTCCGCCGGTACGTGTGGATTCAAAGGTACAAGAAGAGGGACACCATTTGCCGCTCAAACCGCAGCAGGAAATGCTATTCGGGCAGTAGTGGATCAAGGTATGCAACGAGCCGAAGTTATGATAAAGGGCCCTGGTCTCGGAAGAGATGCAGCATTAAGAGCTATCCGTAGAAGCGACAGTAAGCGTCTTTATTATGGACGCTTTATTCTGTCTCCACTTATGAAGGGGCAAGCGGATACTATAGGCATTGCGATGCGAAAAGCTTTACTTGGAGAAATAGAGGGAACATGTATCACACGTGCAAAATCTGAAAAAATCCCACATGAATACTCTACCATAGTCGGTATTCAAGAATCAGTACATGAAATTTTAATGAATTTGAAAGAAATTGTATTGAGAAGTAATCTGTATGGAACTCGTGATGCGTCTATTTGTGTCAAGGGTCCTGGCTGCGTAACTGCTCAAGACATCATCTTACCACCTTCGGTGGAAATCGTTGATAATACGCAGCATATAGCTAACCTAACGGAACCAATTAATTTGTGTATTGAATTAAAGATCGAGAGGAATCGCGGATATCGTATACAAACGCCAAATAATTTTCAAGACGCAAGTTATCCTATAGATGCTATATTCATGCCTGTTCGAAATGCGAATCATAGTATTCATTCTTATTTAATAATCCCGCCGGTACAGAAACCATTAAAAGAACACCCAATAACTTATTTGGCACTGTACGAAGTATTTGAAATACGGGAAAGAAATACCATTCCGGCAATATTTCCAAAGGAGTTGCAAATGGATCTGCGGGTTCACCAATCATTGATGGTTCTAGGACCGCTAAGCCCACGTTACATGCAATAG

Protein sequence

MKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPDNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSDSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYLIIPPVQKPLKEHPITYLALYEVFEIRERNTIPAIFPKELQMDLRVHQSLMVLGPLSPRYMQ

Homology

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BLAST of Clc00G02660 vs. NCBI nr
Match: RDY14681.1 (DNA-directed RNA polymerase subunit alpha, partial [Mucuna pruriens])

HSP 1 Score: 664.8 bits (1714), Expect = 5.3e-187
Identity = 352/487 (72.28%), Postives = 372/487 (76.39%), Query Frame = 0


Query: 1   MKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKGISYRGN ICFGRYA+QALEPAWITSRQIEAGRRAM+RN RRGG+IWVRIFPDKPVT+
Sbjct: 1   MKGISYRGNLICFGRYALQALEPAWITSRQIEAGRRAMSRNVRRGGQIWVRIFPDKPVTV 60

Query: 61  RPTETRMGSGKGSPEYWVAVVKP-----------------------------------DN 120
           RPTETRMGSGKGSPEYWVAVVKP                                     
Sbjct: 61  RPTETRMGSGKGSPEYWVAVVKPGKILYEMGGKGYFNSSIQNAYTNSIHYFWIIIRTKGK 120

Query: 121 SGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKREN 180
           +GARELMCIRI+GASNRRYA+IGD++VAVIK+AVPNT LERSEVIRAVIVRTCKELKR N
Sbjct: 121 NGARELMCIRILGASNRRYAYIGDIVVAVIKEAVPNTNLERSEVIRAVIVRTCKELKRSN 180

Query: 181 GMIIRYDDNAAVVIDQEGNPKGTRIF---------------------------------- 240
           G+II+YDDNAAVVIDQEGNPKGTRIF                                  
Sbjct: 181 GIIIQYDDNAAVVIDQEGNPKGTRIFCAIARELRQLNFTKIVSLAPEHTRKIPKGVIHVQ 240

Query: 241 -----------DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEV 300
                      DVRGRVISWSSAGTCGFKGTRRGTPF AQTAAGNAIR V DQGMQRAEV
Sbjct: 241 ASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFGAQTAAGNAIRTVADQGMQRAEV 300

Query: 301 MIKGPGLGRDAALRAIRRSDSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCIT 360
           MIKGPGLGRDAALRAIRRS                 GQADTIGIAMR+ LLGEIEGTCIT
Sbjct: 301 MIKGPGLGRDAALRAIRRS-----------------GQADTIGIAMRRVLLGEIEGTCIT 360

Query: 361 RAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIIL 408
           RAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGT+DASIC KGPG VTAQDIIL
Sbjct: 361 RAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTQDASICFKGPGYVTAQDIIL 420

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BLAST of Clc00G02660 vs. NCBI nr
Match: KAF9660677.1 (hypothetical protein SADUNF_SadunfPtG0000200 [Salix dunnii] >KAF9664285.1 hypothetical protein SADUNF_Sadunf16G0002000 [Salix dunnii])

HSP 1 Score: 607.4 bits (1565), Expect = 1.0e-169
Identity = 317/422 (75.12%), Postives = 338/422 (80.09%), Query Frame = 0


Query: 1   MKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKG+SYRGNRICFGRYA+QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVTL
Sbjct: 1   MKGVSYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTL 60

Query: 61  RPTETRMGSGKGSPEYWVAVVKP----------------DNSGARELMCIRIIGASNRRY 120
           RP+ETRMGSGKGSPEYWVAVVKP                DNSGARELMCIRIIG SNRRY
Sbjct: 61  RPSETRMGSGKGSPEYWVAVVKPDSKKNMIQSQTHLNVADNSGARELMCIRIIGTSNRRY 120

Query: 121 AHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKRENGMIIRYDDNAAVVIDQEGN 180
           AHIGDVI+AVIK+AVPN+PLERSEVIRAVIVRT KELKR+N                   
Sbjct: 121 AHIGDVIIAVIKEAVPNSPLERSEVIRAVIVRTSKELKRDN------------------- 180

Query: 181 PKGTRIFDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKG 240
                              G CGF+GTRRGTPFAAQTAAGNAIR VVDQGMQRAEVMIKG
Sbjct: 181 -------------------GACGFRGTRRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKG 240

Query: 241 PGLGRDAALRAIRRSDSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKS 300
           PGLGRDAALRAIRRS                 GQADTIGIAMR+ALLGEIEGTCITRAKS
Sbjct: 241 PGLGRDAALRAIRRS-----------------GQADTIGIAMRRALLGEIEGTCITRAKS 300

Query: 301 EKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSV 360
           +KIPHE+STI GIQES+HEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSV
Sbjct: 301 QKIPHEFSTITGIQESIHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSV 360

Query: 361 EIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIH 407
           EI+DNTQHIA+L EPI+L I L+IERNRGY +++P NFQD SY IDA+FMPVRNANHS+H
Sbjct: 361 EIIDNTQHIASLREPIDLHIGLQIERNRGYCMKSPKNFQDGSYSIDAVFMPVRNANHSVH 367

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BLAST of Clc00G02660 vs. NCBI nr
Match: KAD4981935.1 (hypothetical protein E3N88_18606 [Mikania micrantha])

HSP 1 Score: 605.5 bits (1560), Expect = 3.8e-169
Identity = 332/476 (69.75%), Postives = 346/476 (72.69%), Query Frame = 0


Query: 20  ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVA 79
           ALEPAWITSRQIEAGRRAMT NARRGGKIWVRIFPDKPVT+RP ETRMGSGKG PEYWVA
Sbjct: 255 ALEPAWITSRQIEAGRRAMTLNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGFPEYWVA 314

Query: 80  VVKP-------DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRA 139
           VVKP       DNSGARELMCIRIIGASNRRYAHIGDVIVAVIK AVPN PLERSEV+RA
Sbjct: 315 VVKPGRILYEMDNSGARELMCIRIIGASNRRYAHIGDVIVAVIKDAVPNMPLERSEVVRA 374

Query: 140 VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIF--------------------- 199
           VIVRTCKELKR+NGMIIRYDDNAAVVIDQEGNPKGTR+F                     
Sbjct: 375 VIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRQFNFTKIVSLAPE 434

Query: 200 ------------------------------------------------------------ 259
                                                                       
Sbjct: 435 EVLPGMKEQKWIHEGLITESLPNGMFRVRLDNENMILGYVSGKIRRSFIRILPGDRVKIE 494

Query: 260 --------DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIK 319
                   DVRGRV+SWSSAGTCGF+GTRRGTPFA QTAA NAIRAVVDQGMQRAEVMIK
Sbjct: 495 VSRYDSTRDVRGRVVSWSSAGTCGFRGTRRGTPFATQTAAANAIRAVVDQGMQRAEVMIK 554

Query: 320 GPGLGRDAALRAIRRS---------------DSKRLYYGRFILSPLMKGQADTIGIAMRK 379
           GPGL RDAALRAIRRS               DSKRL YGRFILSPLMKGQADTIGIAMR+
Sbjct: 555 GPGLRRDAALRAIRRSVSTRTLQWKCVESAADSKRLLYGRFILSPLMKGQADTIGIAMRR 614

Query: 380 ALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVK 385
           ALLGEIEGTCITRAKSEKI HEYSTI+GIQESVHEILMNLKEIVLRSNLYGT +ASICV+
Sbjct: 615 ALLGEIEGTCITRAKSEKISHEYSTIMGIQESVHEILMNLKEIVLRSNLYGTCEASICVR 674

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BLAST of Clc00G02660 vs. NCBI nr
Match: KAG6483930.1 (hypothetical protein ZIOFF_060716 [Zingiber officinale])

HSP 1 Score: 565.5 bits (1456), Expect = 4.4e-157
Identity = 298/383 (77.81%), Postives = 319/383 (83.29%), Query Frame = 0


Query: 25  WI-TSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKP 84
           WI  +RQIEAGRRAMTR  RRGGKIWVRIFPDKPVT+RP ETRMGS              
Sbjct: 582 WIREARQIEAGRRAMTRYVRRGGKIWVRIFPDKPVTVRPAETRMGSA------------- 641

Query: 85  DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKR 144
           DNSGARELMCIRIIGA N RYAHIGDVIVAVIK+AVPN PLERSEVIRAVIVRTCKELKR
Sbjct: 642 DNSGARELMCIRIIGAGNYRYAHIGDVIVAVIKEAVPNMPLERSEVIRAVIVRTCKELKR 701

Query: 145 ENGMIIRYDDNAAVVIDQEGNPKGTRIFDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAA 204
           +NG+IIRYDDNAAVVIDQEGNPKGTR+FDVRGRV+SW+SAGT GFKG RRGTP+AAQ AA
Sbjct: 702 DNGIIIRYDDNAAVVIDQEGNPKGTRVFDVRGRVVSWASAGTSGFKGPRRGTPYAAQAAA 761

Query: 205 GNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSDSKRLYYGRFILSPLMKGQADTIG 264
            NAIR VVDQGMQRA VMIKGPGLGRDA LRAI RS                 GQADT+G
Sbjct: 762 VNAIRTVVDQGMQRAGVMIKGPGLGRDAELRAICRS-----------------GQADTMG 821

Query: 265 IAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDA 324
           IAMR+ALLGEIEGTCIT AKSEK+PHEYSTIVGI+ESVHEIL+NLKEIVLRSN++G RDA
Sbjct: 822 IAMRRALLGEIEGTCITCAKSEKVPHEYSTIVGIEESVHEILLNLKEIVLRSNIHGVRDA 881

Query: 325 SICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQ 384
           SI VKGP  VTAQDII PPSVEIVD TQHIANLTEPI+LCI L+I R+RGY  +   N Q
Sbjct: 882 SIYVKGPKYVTAQDIISPPSVEIVDTTQHIANLTEPIDLCIGLQIRRDRGYCTKPTINSQ 934

Query: 385 DASYPIDAIFMPVRNANHSIHSY 407
           D SYPIDA+ MPVRNANHSIHSY
Sbjct: 942 DGSYPIDAVSMPVRNANHSIHSY 934

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BLAST of Clc00G02660 vs. NCBI nr
Match: KAD7117051.1 (hypothetical protein E3N88_04319 [Mikania micrantha])

HSP 1 Score: 550.1 bits (1416), Expect = 1.9e-152
Identity = 305/464 (65.73%), Postives = 321/464 (69.18%), Query Frame = 0


Query: 20  ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVA 79
           ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVT+RPTETRMGSGKGSPEYWVA
Sbjct: 202 ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVA 261

Query: 80  VVKP-------DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRA 139
           VVKP       DNSGARELMCIRIIGASNRRYAHIGDVIVAVIK AVPN PLERSEV+RA
Sbjct: 262 VVKPGRILYEMDNSGARELMCIRIIGASNRRYAHIGDVIVAVIKDAVPNMPLERSEVVRA 321

Query: 140 VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIF--------------------- 199
           VIVRTCKELKR+NGMIIRYDDN AVVIDQEGNPKGTR F                     
Sbjct: 322 VIVRTCKELKRDNGMIIRYDDNVAVVIDQEGNPKGTRFFGAIARELRQFNFTKIVSLAPE 381

Query: 200 ----------------------------------DVRGRVISWSSAGTCGFKGTRRGTPF 259
                                             DVRG+V+SWSSAGTCGF+GTRRGTPF
Sbjct: 382 GSRGRIGSRKSIRKIPKGVIHIQASFNNTIVTVTDVRGQVVSWSSAGTCGFRGTRRGTPF 441

Query: 260 AAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRS---------------DSK 319
           AAQTAA NAIRAVVDQGMQRAEVMIKGPGLGRDA LRAIRRS               DSK
Sbjct: 442 AAQTAAANAIRAVVDQGMQRAEVMIKGPGLGRDATLRAIRRSVSTRTLQWKCVESAADSK 501

Query: 320 RLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVH 379
           RL YGRFILS LMKGQADTIGIAMR+A        C+ ++K                   
Sbjct: 502 RLLYGRFILSSLMKGQADTIGIAMRRA--------CLEKSKEH----------------- 561

Query: 380 EILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINL 407
                               ASICV+GPG VTAQDIILPP VEIVDNTQHIA+LTEPI L
Sbjct: 562 --------------------ASICVRGPGYVTAQDIILPPYVEIVDNTQHIASLTEPIEL 620

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BLAST of Clc00G02660 vs. ExPASy Swiss-Prot
Match: Q4VZK3 (DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus OX=3659 GN=rpoA PE=3 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 4.8e-90
Identity = 163/170 (95.88%), Postives = 166/170 (97.65%), Query Frame = 0


Query: 238 RSDSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGI 297
           R+DSKRLYYGRFILSPLMKGQ DTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGI
Sbjct: 21  RADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGI 80

Query: 298 QESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLT 357
           QESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANL 
Sbjct: 81  QESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLM 140

Query: 358 EPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYL 408
           EPINLCIELKIERNRGY IQTPNNFQDASYP+DAIFMPVRN NHSIHSY+
Sbjct: 141 EPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYV 190

[Close]

BLAST of Clc00G02660 vs. ExPASy Swiss-Prot
Match: Q09WY5 (DNA-directed RNA polymerase subunit alpha OS=Morus indica OX=248361 GN=rpoA PE=3 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 2.9e-87
Identity = 157/170 (92.35%), Postives = 167/170 (98.24%), Query Frame = 0


Query: 238 RSDSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGI 297
           R+DSKRLYYGRF+L+PLM+GQADTIGIAMR+ALLGEIEGTCITRAKSEKIPHEYSTIVGI
Sbjct: 21  RADSKRLYYGRFLLAPLMRGQADTIGIAMRRALLGEIEGTCITRAKSEKIPHEYSTIVGI 80

Query: 298 QESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLT 357
           QESVHEILMNLKEIVLRSNLYGTRDASICVKGPG VTAQDIILPPSVEIVDNTQHIANLT
Sbjct: 81  QESVHEILMNLKEIVLRSNLYGTRDASICVKGPGYVTAQDIILPPSVEIVDNTQHIANLT 140

Query: 358 EPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYL 408
           EPI LCIEL+IERNRGYRI+TPNNFQ+ SYPIDA+FMPVRNANHSIHSY+
Sbjct: 141 EPITLCIELQIERNRGYRIKTPNNFQNGSYPIDAVFMPVRNANHSIHSYV 190

[Close]

BLAST of Clc00G02660 vs. ExPASy Swiss-Prot
Match: Q49KW6 (DNA-directed RNA polymerase subunit alpha OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rpoA PE=3 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 1.2e-85
Identity = 156/169 (92.31%), Postives = 163/169 (96.45%), Query Frame = 0


Query: 238 RSDSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGI 297
           R+DSKRLYYGRFILSPLMKGQADTIGIAMR+ALLGEIEGTCITRAK EKIPHEYSTIVGI
Sbjct: 21  RADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKFEKIPHEYSTIVGI 80

Query: 298 QESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLT 357
           QESVHEILMNLKEIVLRSNLYGTR+ASICVKGPGCVTAQDIILP SVEIVDNTQ+IANLT
Sbjct: 81  QESVHEILMNLKEIVLRSNLYGTRNASICVKGPGCVTAQDIILPTSVEIVDNTQYIANLT 140

Query: 358 EPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSY 407
           EPINLCI L+IERNRGY I+TP NFQD SYPIDA+FMPVRNANHSIHSY
Sbjct: 141 EPINLCIGLQIERNRGYHIKTPKNFQDGSYPIDAVFMPVRNANHSIHSY 189

[Close]

BLAST of Clc00G02660 vs. ExPASy Swiss-Prot
Match: Q2PMQ3 (DNA-directed RNA polymerase subunit alpha OS=Glycine max OX=3847 GN=rpoA PE=3 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 2.3e-84
Identity = 153/170 (90.00%), Postives = 160/170 (94.12%), Query Frame = 0


Query: 238 RSDSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGI 297
           R DSKRLYYGRFILSPLMKGQADTIGIAMR+ LLGEIEGTCITR KSEKIPHEYSTI+GI
Sbjct: 21  RIDSKRLYYGRFILSPLMKGQADTIGIAMRRVLLGEIEGTCITRVKSEKIPHEYSTIIGI 80

Query: 298 QESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLT 357
           +ESVHEILMNLKEIVLRSNLYGTRDASIC KGPG VTAQDIILPPSVEIVDNTQHIAN+T
Sbjct: 81  EESVHEILMNLKEIVLRSNLYGTRDASICFKGPGYVTAQDIILPPSVEIVDNTQHIANVT 140

Query: 358 EPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYL 408
           EP+NLCIELKIERNRGYRI+T  NFQD SYPIDA FMPVRN NHSIHSY+
Sbjct: 141 EPVNLCIELKIERNRGYRIKTLKNFQDGSYPIDATFMPVRNVNHSIHSYV 190

[Close]

BLAST of Clc00G02660 vs. ExPASy Swiss-Prot
Match: Q9MTJ3 (DNA-directed RNA polymerase subunit alpha OS=Oenothera elata subsp. hookeri OX=85636 GN=rpoA PE=3 SV=2)

HSP 1 Score: 313.2 bits (801), Expect = 5.1e-84
Identity = 152/169 (89.94%), Postives = 162/169 (95.86%), Query Frame = 0


Query: 238 RSDSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGI 297
           R DSKRLYYGRFILSPLMKGQADTIGIAMR+ALLGEIEGTCITRAK EKIPHEYSTIVGI
Sbjct: 21  RVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKFEKIPHEYSTIVGI 80

Query: 298 QESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLT 357
           QESVHEILMNLKEIVLRSNLYGT +ASICVKGPGCVTAQDI+LPPSVEI+DNTQHIA+L 
Sbjct: 81  QESVHEILMNLKEIVLRSNLYGTCNASICVKGPGCVTAQDILLPPSVEIIDNTQHIASLM 140

Query: 358 EPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSY 407
           EPI+LCI L+IERNRGY I++PNNFQD SYPIDA+FMPVRNANHSIHSY
Sbjct: 141 EPIHLCIGLQIERNRGYHIKSPNNFQDGSYPIDAVFMPVRNANHSIHSY 189

[Close]

BLAST of Clc00G02660 vs. ExPASy TrEMBL
Match: A0A371II16 (Plastid-encoded RNA polymerase subunit alpha (Fragment) OS=Mucuna pruriens OX=157652 GN=rpoA PE=3 SV=1)

HSP 1 Score: 664.8 bits (1714), Expect = 2.6e-187
Identity = 352/487 (72.28%), Postives = 372/487 (76.39%), Query Frame = 0


Query: 1   MKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKGISYRGN ICFGRYA+QALEPAWITSRQIEAGRRAM+RN RRGG+IWVRIFPDKPVT+
Sbjct: 1   MKGISYRGNLICFGRYALQALEPAWITSRQIEAGRRAMSRNVRRGGQIWVRIFPDKPVTV 60

Query: 61  RPTETRMGSGKGSPEYWVAVVKP-----------------------------------DN 120
           RPTETRMGSGKGSPEYWVAVVKP                                     
Sbjct: 61  RPTETRMGSGKGSPEYWVAVVKPGKILYEMGGKGYFNSSIQNAYTNSIHYFWIIIRTKGK 120

Query: 121 SGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKREN 180
           +GARELMCIRI+GASNRRYA+IGD++VAVIK+AVPNT LERSEVIRAVIVRTCKELKR N
Sbjct: 121 NGARELMCIRILGASNRRYAYIGDIVVAVIKEAVPNTNLERSEVIRAVIVRTCKELKRSN 180

Query: 181 GMIIRYDDNAAVVIDQEGNPKGTRIF---------------------------------- 240
           G+II+YDDNAAVVIDQEGNPKGTRIF                                  
Sbjct: 181 GIIIQYDDNAAVVIDQEGNPKGTRIFCAIARELRQLNFTKIVSLAPEHTRKIPKGVIHVQ 240

Query: 241 -----------DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEV 300
                      DVRGRVISWSSAGTCGFKGTRRGTPF AQTAAGNAIR V DQGMQRAEV
Sbjct: 241 ASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFGAQTAAGNAIRTVADQGMQRAEV 300

Query: 301 MIKGPGLGRDAALRAIRRSDSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCIT 360
           MIKGPGLGRDAALRAIRRS                 GQADTIGIAMR+ LLGEIEGTCIT
Sbjct: 301 MIKGPGLGRDAALRAIRRS-----------------GQADTIGIAMRRVLLGEIEGTCIT 360

Query: 361 RAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIIL 408
           RAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGT+DASIC KGPG VTAQDIIL
Sbjct: 361 RAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTQDASICFKGPGYVTAQDIIL 420

[Close]

BLAST of Clc00G02660 vs. ExPASy TrEMBL
Match: A0A5N6NML1 (S1-like domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_18606 PE=3 SV=1)

HSP 1 Score: 605.5 bits (1560), Expect = 1.9e-169
Identity = 332/476 (69.75%), Postives = 346/476 (72.69%), Query Frame = 0


Query: 20  ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVA 79
           ALEPAWITSRQIEAGRRAMT NARRGGKIWVRIFPDKPVT+RP ETRMGSGKG PEYWVA
Sbjct: 255 ALEPAWITSRQIEAGRRAMTLNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGFPEYWVA 314

Query: 80  VVKP-------DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRA 139
           VVKP       DNSGARELMCIRIIGASNRRYAHIGDVIVAVIK AVPN PLERSEV+RA
Sbjct: 315 VVKPGRILYEMDNSGARELMCIRIIGASNRRYAHIGDVIVAVIKDAVPNMPLERSEVVRA 374

Query: 140 VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIF--------------------- 199
           VIVRTCKELKR+NGMIIRYDDNAAVVIDQEGNPKGTR+F                     
Sbjct: 375 VIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRQFNFTKIVSLAPE 434

Query: 200 ------------------------------------------------------------ 259
                                                                       
Sbjct: 435 EVLPGMKEQKWIHEGLITESLPNGMFRVRLDNENMILGYVSGKIRRSFIRILPGDRVKIE 494

Query: 260 --------DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIK 319
                   DVRGRV+SWSSAGTCGF+GTRRGTPFA QTAA NAIRAVVDQGMQRAEVMIK
Sbjct: 495 VSRYDSTRDVRGRVVSWSSAGTCGFRGTRRGTPFATQTAAANAIRAVVDQGMQRAEVMIK 554

Query: 320 GPGLGRDAALRAIRRS---------------DSKRLYYGRFILSPLMKGQADTIGIAMRK 379
           GPGL RDAALRAIRRS               DSKRL YGRFILSPLMKGQADTIGIAMR+
Sbjct: 555 GPGLRRDAALRAIRRSVSTRTLQWKCVESAADSKRLLYGRFILSPLMKGQADTIGIAMRR 614

Query: 380 ALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVK 385
           ALLGEIEGTCITRAKSEKI HEYSTI+GIQESVHEILMNLKEIVLRSNLYGT +ASICV+
Sbjct: 615 ALLGEIEGTCITRAKSEKISHEYSTIMGIQESVHEILMNLKEIVLRSNLYGTCEASICVR 674

[Close]

BLAST of Clc00G02660 vs. ExPASy TrEMBL
Match: A0A5N6PW93 (Ribosomal_L2_C domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_04319 PE=3 SV=1)

HSP 1 Score: 550.1 bits (1416), Expect = 9.2e-153
Identity = 305/464 (65.73%), Postives = 321/464 (69.18%), Query Frame = 0


Query: 20  ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVA 79
           ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVT+RPTETRMGSGKGSPEYWVA
Sbjct: 202 ALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVA 261

Query: 80  VVKP-------DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRA 139
           VVKP       DNSGARELMCIRIIGASNRRYAHIGDVIVAVIK AVPN PLERSEV+RA
Sbjct: 262 VVKPGRILYEMDNSGARELMCIRIIGASNRRYAHIGDVIVAVIKDAVPNMPLERSEVVRA 321

Query: 140 VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIF--------------------- 199
           VIVRTCKELKR+NGMIIRYDDN AVVIDQEGNPKGTR F                     
Sbjct: 322 VIVRTCKELKRDNGMIIRYDDNVAVVIDQEGNPKGTRFFGAIARELRQFNFTKIVSLAPE 381

Query: 200 ----------------------------------DVRGRVISWSSAGTCGFKGTRRGTPF 259
                                             DVRG+V+SWSSAGTCGF+GTRRGTPF
Sbjct: 382 GSRGRIGSRKSIRKIPKGVIHIQASFNNTIVTVTDVRGQVVSWSSAGTCGFRGTRRGTPF 441

Query: 260 AAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRS---------------DSK 319
           AAQTAA NAIRAVVDQGMQRAEVMIKGPGLGRDA LRAIRRS               DSK
Sbjct: 442 AAQTAAANAIRAVVDQGMQRAEVMIKGPGLGRDATLRAIRRSVSTRTLQWKCVESAADSK 501

Query: 320 RLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVH 379
           RL YGRFILS LMKGQADTIGIAMR+A        C+ ++K                   
Sbjct: 502 RLLYGRFILSSLMKGQADTIGIAMRRA--------CLEKSKEH----------------- 561

Query: 380 EILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINL 407
                               ASICV+GPG VTAQDIILPP VEIVDNTQHIA+LTEPI L
Sbjct: 562 --------------------ASICVRGPGYVTAQDIILPPYVEIVDNTQHIASLTEPIEL 620

[Close]

BLAST of Clc00G02660 vs. ExPASy TrEMBL
Match: A0A5N6N9A8 (S1-like domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_22057 PE=3 SV=1)

HSP 1 Score: 528.5 bits (1360), Expect = 2.9e-146
Identity = 305/496 (61.49%), Postives = 330/496 (66.53%), Query Frame = 0


Query: 84  DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKR 143
           DNSGARELMCIRIIGASNRRYAHIGDVIVAVIK AVPN PLERSEV+RAVIVRTCKELKR
Sbjct: 12  DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKDAVPNMPLERSEVVRAVIVRTCKELKR 71

Query: 144 ENGMIIRYDDNAAVVIDQEGNPKGTRIF-------------------------------- 203
           +NGMIIRYDDNAAVVIDQEGNPKGTR+F                                
Sbjct: 72  DNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRQFNFTKIVSLAPEEVLPGMKEQKW 131

Query: 204 ---------------------------------------------------------DVR 263
                                                                    DVR
Sbjct: 132 IHEGLITESLPNGMFRVRLDNENMILGYVSGKIRRSFIRILPGDRVKIEVSRYDSTRDVR 191

Query: 264 GRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALR 323
           GRV+SWSSAGTCGF+GTRRGTPFAAQTAA NAIRAVVDQGMQRAEVMIKGPGLGRDA LR
Sbjct: 192 GRVVSWSSAGTCGFRGTRRGTPFAAQTAAANAIRAVVDQGMQRAEVMIKGPGLGRDATLR 251

Query: 324 AIRRS---------------DSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCI 383
           AIRRS               DSKRL YGRFILSPLMKGQADTIGIAMR+ALLGEIEGTCI
Sbjct: 252 AIRRSVSTRTLQWKCVESAADSKRLLYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCI 311

Query: 384 TRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDII 443
           TRAK EKI HEYSTI+GIQESVHEILMNLKEIVLRSNLYGT +ASICV+GPG VTAQDII
Sbjct: 312 TRAKFEKISHEYSTIMGIQESVHEILMNLKEIVLRSNLYGTCEASICVRGPGYVTAQDII 371

Query: 444 LPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNA 464
           LPP V IVDNTQHIA+LTEPI L I L+IE+NRGY I+ PN FQD SYPID +FMPVRNA
Sbjct: 372 LPPYVAIVDNTQHIASLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPVRNA 431

[Close]

BLAST of Clc00G02660 vs. ExPASy TrEMBL
Match: A0A6A5PE04 (RPOLD domain-containing protein OS=Lupinus albus OX=3870 GN=Lal_00046743 PE=3 SV=1)

HSP 1 Score: 453.4 bits (1165), Expect = 1.2e-123
Identity = 252/389 (64.78%), Postives = 273/389 (70.18%), Query Frame = 0


Query: 84  DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKR 143
           +NSGARELMCIRIIGASN+RY +IGD++VAVIK+AVPNTPLERSEVIR VIVRTCKELKR
Sbjct: 12  NNSGARELMCIRIIGASNQRYGYIGDIVVAVIKEAVPNTPLERSEVIRTVIVRTCKELKR 71

Query: 144 ENGMIIRYDDNAAVVIDQEGNPKGTRIF-------------------------------- 203
            NG+II Y+DNAAV+IDQEGNPKGTRIF                                
Sbjct: 72  NNGIIIHYNDNAAVIIDQEGNPKGTRIFGAMARELRQLNFTKIVSLASEYGKPTPKMGSC 131

Query: 204 ---------------------------------DVRGRVISWSSAGTCGFKGTRRGTPFA 263
                                            DVRG VIS SS GTCGFKGTRRG  FA
Sbjct: 132 KNGRIGSRKHARKIPKGVIHVQASFNNTIVTVTDVRGWVISCSSTGTCGFKGTRRGKSFA 191

Query: 264 AQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSDSKRLYYGRFILSPLMKGQ 323
           AQT   NAI  V DQGM+RAEVMIKGPGLG DAALRAIRRS                 GQ
Sbjct: 192 AQTTIANAILRVADQGMERAEVMIKGPGLG-DAALRAIRRS-----------------GQ 251

Query: 324 ADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLY 383
           ADTIGIAMR+ LLGEIEGTCITRAKSEKIPH+YST++GIQESVH+ILMNLKEIVLRSNLY
Sbjct: 252 ADTIGIAMRRVLLGEIEGTCITRAKSEKIPHDYSTLIGIQESVHKILMNLKEIVLRSNLY 311

Query: 384 GTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQT 408
           GTR+ SI VKGP  VTAQDI+LPPSVEIVDNTQHIANLTEPIN  I L+I  N  YRI+T
Sbjct: 312 GTRETSIFVKGPRYVTAQDILLPPSVEIVDNTQHIANLTEPINFYIGLQIVGNHRYRIKT 371

[Close]

BLAST of Clc00G02660 vs. TAIR 10
Match: ATCG00740.1 (RNA polymerase subunit alpha )

HSP 1 Score: 296.6 bits (758), Expect = 3.5e-80
Identity = 142/169 (84.02%), Postives = 156/169 (92.31%), Query Frame = 0


Query: 238 RSDSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGI 297
           + DSKRLYYGRFILSPLMKGQADTIGIAMR+ALLGEIEGTCITRAKSE IPH+YS I GI
Sbjct: 21  KRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSENIPHDYSNIAGI 80

Query: 298 QESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLT 357
           QESVHEILMNL EIVLRSNLYGTR+A ICV+GPG +TA+DIILPP+VEI+DNTQHIA LT
Sbjct: 81  QESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEIIDNTQHIATLT 140

Query: 358 EPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSY 407
           EPI+LCIELKIERNRGY ++  NNF+D SYPIDA+FMPV NANHSIHSY
Sbjct: 141 EPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSY 189

[Close]

BLAST of Clc00G02660 vs. TAIR 10
Match: ATCG00780.1 (ribosomal protein L14 )

HSP 1 Score: 168.7 bits (426), Expect = 1.1e-41
Identity = 83/88 (94.32%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 84  DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKR 143
           DNSGARELMCIRIIGASNRRYAHIGDVIVAVIK+A+PNTPLERSEVIRAVIVRTCKELKR
Sbjct: 12  DNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAIPNTPLERSEVIRAVIVRTCKELKR 71

Query: 144 ENGMIIRYDDNAAVVIDQEGNPKGTRIF 172
            NG IIRYDDNAAVVIDQEGNPKGTR+F
Sbjct: 72  NNGTIIRYDDNAAVVIDQEGNPKGTRVF 99

[Close]

BLAST of Clc00G02660 vs. TAIR 10
Match: ATCG00790.1 (ribosomal protein L16 )

HSP 1 Score: 166.4 bits (420), Expect = 5.5e-41
Identity = 76/83 (91.57%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 1  MKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
          +KGIS RGNRICFGRYA+Q LEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+
Sbjct: 17 LKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTV 76

Query: 61 RPTETRMGSGKGSPEYWVAVVKP 84
          RP ETRMGSGKGSPEYWVAVVKP
Sbjct: 77 RPAETRMGSGKGSPEYWVAVVKP 99

[Close]

BLAST of Clc00G02660 vs. TAIR 10
Match: ATCG00750.1 (ribosomal protein S11 )

HSP 1 Score: 131.7 bits (330), Expect = 1.5e-30
Identity = 66/70 (94.29%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 170 IFDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGR 229
           + DVRGRVISWSSAGTCGF+GTRRGTPFAAQTAAGNAIRAVVDQGMQRAEV IKGPGLGR
Sbjct: 43  VTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVRIKGPGLGR 102

Query: 230 DAALRAIRRS 240
           DAALRAIRRS
Sbjct: 103 DAALRAIRRS 112

[Close]

BLAST of Clc00G02660 vs. TAIR 10
Match: AT2G28830.1 (PLANT U-BOX 12 )

HSP 1 Score: 117.5 bits (293), Expect = 2.9e-26
Identity = 59/82 (71.95%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 2   KGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLR 61
           KG+S +G  IC  RYA+Q LEPAWITSRQIEAGRRAMTRN  RG  + V IF DKPVT+R
Sbjct: 847 KGVSSQG-YIC-SRYALQTLEPAWITSRQIEAGRRAMTRNIGRGLTVRVHIFADKPVTVR 906

Query: 62  PTETRMGSGKGSPEYWVAVVKP 84
           P ETRMG GKG+P +WVAVVKP
Sbjct: 907 PPETRMGRGKGAPAFWVAVVKP 926

The following BLAST results are available for this feature:

BLAST of Clc00G02660 vs. NCBI nr


Match Name	E-value	Identity	Description
RDY14681.1	5.3e-187	72.28	DNA-directed RNA polymerase subunit alpha, partial [Mucuna pruriens]	[more]
KAF9660677.1	1.0e-169	75.12	hypothetical protein SADUNF_SadunfPtG0000200 [Salix dunnii] >KAF9664285.1 hypoth...	[more]
KAD4981935.1	3.8e-169	69.75	hypothetical protein E3N88_18606 [Mikania micrantha]	[more]
KAG6483930.1	4.4e-157	77.81	hypothetical protein ZIOFF_060716 [Zingiber officinale]	[more]
KAD7117051.1	1.9e-152	65.73	hypothetical protein E3N88_04319 [Mikania micrantha]	[more]

BLAST of Clc00G02660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZK3	4.8e-90	95.88	DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus OX=3659 GN=rpoA PE=...	[more]
Q09WY5	2.9e-87	92.35	DNA-directed RNA polymerase subunit alpha OS=Morus indica OX=248361 GN=rpoA PE=3...	[more]
Q49KW6	1.2e-85	92.31	DNA-directed RNA polymerase subunit alpha OS=Eucalyptus globulus subsp. globulus...	[more]
Q2PMQ3	2.3e-84	90.00	DNA-directed RNA polymerase subunit alpha OS=Glycine max OX=3847 GN=rpoA PE=3 SV...	[more]
Q9MTJ3	5.1e-84	89.94	DNA-directed RNA polymerase subunit alpha OS=Oenothera elata subsp. hookeri OX=8...	[more]

BLAST of Clc00G02660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A371II16	2.6e-187	72.28	Plastid-encoded RNA polymerase subunit alpha (Fragment) OS=Mucuna pruriens OX=15...	[more]
A0A5N6NML1	1.9e-169	69.75	S1-like domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_18606 ...	[more]
A0A5N6PW93	9.2e-153	65.73	Ribosomal_L2_C domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88...	[more]
A0A5N6N9A8	2.9e-146	61.49	S1-like domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_22057 ...	[more]
A0A6A5PE04	1.2e-123	64.78	RPOLD domain-containing protein OS=Lupinus albus OX=3870 GN=Lal_00046743 PE=3 SV...	[more]

BLAST of Clc00G02660 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00740.1	3.5e-80	84.02	RNA polymerase subunit alpha	[more]
ATCG00780.1	1.1e-41	94.32	ribosomal protein L14	[more]
ATCG00790.1	5.5e-41	91.57	ribosomal protein L16	[more]
ATCG00750.1	1.5e-30	94.29	ribosomal protein S11	[more]
AT2G28830.1	2.9e-26	71.95	PLANT U-BOX 12	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000114	Ribosomal protein L16	PRINTS	PR00060	RIBOSOMALL16	coord: 26..37 score: 71.5 coord: 72..101 score: 28.53 coord: 42..71 score: 67.87 coord: 8..20 score: 47.85
IPR000114	Ribosomal protein L16	TIGRFAM	TIGR01164	TIGR01164	coord: 1..83 e-value: 2.4E-37 score: 125.8
IPR000218	Ribosomal protein L14P	SMART	SM01374	Ribosomal_L14_2	coord: 80..185 e-value: 2.7E-35 score: 133.2
IPR000218	Ribosomal protein L14P	PFAM	PF00238	Ribosomal_L14	coord: 84..173 e-value: 1.2E-32 score: 112.4
IPR000218	Ribosomal protein L14P	HAMAP	MF_01367	Ribosomal_L14	coord: 60..271 score: 18.328749
IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	SMART	SM00662	rpoldneu2	coord: 246..427 e-value: 5.0E-6 score: 5.1
IPR036603	RNA polymerase, RBP11-like subunit	GENE3D	3.30.1360.10		coord: 246..405 e-value: 2.6E-44 score: 153.0
IPR036603	RNA polymerase, RBP11-like subunit	SUPERFAMILY	55257	RBP11-like subunits of RNA polymerase	coord: 240..407
IPR011262	DNA-directed RNA polymerase, insert domain	PFAM	PF01000	RNA_pol_A_bac	coord: 283..375 e-value: 1.0E-15 score: 58.1
IPR016180	Ribosomal protein L10e/L16	PFAM	PF00252	Ribosomal_L16	coord: 2..84 e-value: 1.0E-29 score: 103.2
IPR016180	Ribosomal protein L10e/L16	CDD	cd01433	Ribosomal_L16_L10e	coord: 7..83 e-value: 1.01469E-35 score: 126.452
IPR036643	DNA-directed RNA polymerase, insert domain superfamily	GENE3D	2.170.120.12		coord: 276..393 e-value: 2.6E-44 score: 153.0
IPR036643	DNA-directed RNA polymerase, insert domain superfamily	SUPERFAMILY	56553	Insert subdomain of RNA polymerase alpha subunit	coord: 276..394
IPR005745	Ribosomal protein L14P, bacterial-type	TIGRFAM	TIGR01067	TIGR01067	coord: 84..174 e-value: 4.9E-34 score: 114.8
IPR036920	Ribosomal protein L10e/L16 superfamily	GENE3D	3.90.1170.10	Ribosomal protein L10e/L16	coord: 1..82 e-value: 2.2E-38 score: 133.9
IPR036920	Ribosomal protein L10e/L16 superfamily	SUPERFAMILY	54686	Ribosomal protein L16p/L10e	coord: 1..84
IPR001971	Ribosomal protein S11	PFAM	PF00411	Ribosomal_S11	coord: 169..239 e-value: 2.7E-23 score: 82.5
IPR001971	Ribosomal protein S11	HAMAP	MF_01310	Ribosomal_S11	coord: 126..286 score: 16.583363
IPR036853	Ribosomal protein L14 superfamily	GENE3D	2.40.150.20	Ribosomal protein L14	coord: 83..180 e-value: 2.1E-35 score: 123.3
IPR036853	Ribosomal protein L14 superfamily	SUPERFAMILY	50193	Ribosomal protein L14	coord: 83..173
IPR011773	DNA-directed RNA polymerase, alpha subunit	PANTHER	PTHR32108	DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHA	coord: 173..403
None	No IPR available	PANTHER	PTHR32108:SF1	SUBFAMILY NOT NAMED	coord: 173..403
None	No IPR available	CDD	cd06928	RNAP_alpha_NTD	coord: 238..406 e-value: 4.14093E-78 score: 240.834
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 170..240
IPR019972	Ribosomal protein L14P, conserved site	PROSITE	PS00049	RIBOSOMAL_L14	coord: 132..158
IPR020798	Ribosomal protein L16, conserved site	PROSITE	PS00701	RIBOSOMAL_L16_2	coord: 66..77
IPR020798	Ribosomal protein L16, conserved site	PROSITE	PS00586	RIBOSOMAL_L16_1	coord: 43..54

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc00G02660.2	Clc00G02660.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome