Clc00G01055 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc00G01055
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	heat shock factor-binding protein 1
Location	ClcCtg005: 6213 .. 9581 (+)
RNA-Seq Expression	Clc00G01055
Synteny	Clc00G01055

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

atggtgggcattttctcttctttaacctcattccattcaattacgcttcttcaccgttcaatgtcattgctcttgtgtttccatttcgcgtagcttagatttgaaacttttgaaagaacttattcttctgacatgaaattctgttgtgaattttattcctatggtcatttaatgattccgtttcagctttagttactcaatcgtcttgtaaccttttgctcactttgatgccccattagatcaccttgggttttagatactaaacgttggtttggggttcggttcctggtgactgtcttgtggggttcatcgttttaattgatgtttgtaagttttgtcttcttgatcgtgtgattgtgtggagattcaaactttctggatttccttttttaaaactgggcttgttgatttggttgatgtctgcatgccatgggatatggtgtagttttgttgctgagaggctgaaatgaatccctcattgctaaggaagctactggagactaaacatttttgtaagatgggagattatttttaatattgattttttaaactcttacgagttgattgggtattctttttggggcagttttatgaaaggagggttttgggtttaaattgagatcttcgatttggttaattgtctctggttgatacacttctttacttggattaatggaacggatatgagtaaaacattggcctctagtggtttaggtgccgtcgttctttttcctggtggaggttgctttttaggttggtgtttagaggggtagatggggacttagttgaagatttccatgtgagaaagaatagaggtcacctcacccacttttagtttgtagatgatagatgatactgttactgttaacttgaaccaaatcctgcatatctttgaggtcaatatttggcatagaagtgacttggagaagtatttttttgttggagttgtttgttacccttctaagttggttaggcttaggtaggctaggctggtggggtttaaagtttcttgtttgctctatagctacttgagtcttttgagaagttcacaatcctaagtttgtttcagttttggccttgttgtgggaaacgctaaaaatgattttattatatttaaatattttaatttcttataaaaaagctttattttttgaagtagggaggttaaatttgattcaatcagttttgttatggatcctgctctacttcctatgctaatctaacataggaagttgctttcattgccttgattcactttttgtataggaattctactttgtataactttggatccaggagtcttttgtctaatgggagagttctcaagttttccacttttctatccattttgcatgattttcagggtacaaggattcttgtgtgtggatcctcgagtcctctcggtactgtttgcttgtggatcctcaccttttcatatgattatcctttttcttttgttgaatcccttatttttctcatgggagaattaacaccattgactatatgcaacaattgtcttctgtccttctaggtccttatggtggaacatggatcatgttcttaggggttttaatttgggacggtacttttgtaggtctttggtgtccaagtgacccgtagcggtttggataaggctatgatggagcaggtcttatacctccctctgttctgagaagagggaaagggatgaccctttagcatgttgctttctatgcgatcttatggaatatctagcctgagagaaataaaaggatacttatgtatggagaggttttgggccttgtttaggtttgcctccctttaggtcttggctactaaggacttttgcagttaccctttatctctcattcttttgacctataacccttgttttttgtttttttgtttttgtttttgttttcgttccttcttttttttttttttgttttttttttttttgtttttgttttgttttgtagtttgttagctttcttcccctttgtttttggctcttttttgtattgcccttgtatattcttttagttgtggctgattgcttttgggaggataaagaacatttgaccttgtatagtggccaagccatcaattttcaaggttattctaatcactgtttatctatagagtgctactgatatctgttcctggaaaattttataatagtggaatctgattgttgaatgtaattgtgacaactgaagatgttcgatgctcgatgcttgatcttaattctttttcaagattgtcaccctccacttccagtgattcttatttgtttgacttattattgttcatatcatttgactggtttgtttttgtacctttgtgtgacagtgtgaaatgcaccttttactctttttctcttgcaggatgggcatgactctgaagatgcaaagcaaagcacggctgatatgaccatttttgtgagttcattttcttttctttcagtttattttctttgtttttcccatttgatagtcaaccttatttgaaaggtatgttttatgaagttcatcattttctcctgatgaatactcttatgtggtctaaaattctatccccaagacactcttgattatttcttgatggtttatcgttaaattggttttaactcttcttcctttttttcaggtgcaaaatcttcttcaacagatggtgagtttcagttagtgtaaatttccggcagagaactttatgcctaacaaaatcttttttatgcagcaatctaggttccaaaccatgtctgactccattatcacaaagaatatcctttctaaatatatttcttatttttgatgttaagcatttctctaatgttgtaattagaagtgtttctgataggcttgcatacattttgagttttgagttttacaaaatagatcatataattatttgtttgttaatataggctagatagtgcaattttctgagtaatatcattttttttcactcttgcaaacgatgatctagtaaaagttttatataatcaagacatgatagtaatggttttgaaatagattgaatttgtatgagccttaattccttctaatgaggtgtttgaatccagtacaatgtgagatcctctatgtaagtcaccttgattgcaagtttgaatttgttcgacttcctaatacagctttgggcttcagattcattggaaaagaattgtaggattgctttattaatataacttatcgtaaataagctttctttaacttgaatatactcgatgagatggggagccgcataaatgaattggagcagagcatcaacgacctaaaggccgagatgggtgtcgagggctctccgtcgccgctgcctccttcaaagtcaagtgcagatgaagtgaagaaagaggaaggttctgcctag

mRNA sequence

atggatgggcatgactctgaagatgcaaagcaaagcacggctgatatgaccatttttgtgcaaaatcttcttcaacagatggtgagtttcatacaatgtgagatcctctatatggggagccgcataaatgaattggagcagagcatcaacgacctaaaggccgagatgggtgtcgagggctctccgtcgccgctgcctccttcaaagtcaagtgcagatgaagtgaagaaagaggaaggttctgcctag

Coding sequence (CDS)

atggatgggcatgactctgaagatgcaaagcaaagcacggctgatatgaccatttttgtgcaaaatcttcttcaacagatggtgagtttcatacaatgtgagatcctctatatggggagccgcataaatgaattggagcagagcatcaacgacctaaaggccgagatgggtgtcgagggctctccgtcgccgctgcctccttcaaagtcaagtgcagatgaagtgaagaaagaggaaggttctgcctag

Protein sequence

MDGHDSEDAKQSTADMTIFVQNLLQQMVSFIQCEILYMGSRINELEQSINDLKAEMGVEGSPSPLPPSKSSADEVKKEEGSA

Homology

[Close]

BLAST of Clc00G01055 vs. NCBI nr
Match: XP_038899813.1 (heat shock factor-binding protein isoform X1 [Benincasa hispida])

HSP 1 Score: 129.8 bits (325), Expect = 1.1e-26
Identity = 74/89 (83.15%), Postives = 76/89 (85.39%), Query Frame = 0


Query: 1  MDGHDSEDAKQSTADMTIFVQNLLQQMVSFIQ-------CEILYMGSRINELEQSINDLK 60
          MDGHDSEDAKQSTADMTIFVQNLLQQM S  Q        +I  MGSRINELEQSINDLK
Sbjct: 1  MDGHDSEDAKQSTADMTIFVQNLLQQMQSRFQTMSDSIITKIDEMGSRINELEQSINDLK 60

Query: 61 AEMGVEGSPSPLPPSKSSADEVKKEEGSA 83
          AEMGVEGSPSPLPPSKSS+DEVKKEEGSA
Sbjct: 61 AEMGVEGSPSPLPPSKSSSDEVKKEEGSA 89

[Close]

BLAST of Clc00G01055 vs. NCBI nr
Match: XP_008451602.1 (PREDICTED: heat shock factor-binding protein 1 [Cucumis melo])

HSP 1 Score: 127.5 bits (319), Expect = 5.3e-26
Identity = 73/89 (82.02%), Postives = 75/89 (84.27%), Query Frame = 0


Query: 1  MDGHDSEDAKQSTADMTIFVQNLLQQMVSFIQ-------CEILYMGSRINELEQSINDLK 60
          MDGHDSEDAKQSTADMTIFVQNLLQQM S  Q        +I  MGSRINELEQSINDLK
Sbjct: 1  MDGHDSEDAKQSTADMTIFVQNLLQQMQSRFQTMSDSIITKIDEMGSRINELEQSINDLK 60

Query: 61 AEMGVEGSPSPLPPSKSSADEVKKEEGSA 83
          AEMGVEGSPSPLPPSKS ADEVKK+EGSA
Sbjct: 61 AEMGVEGSPSPLPPSKSVADEVKKDEGSA 89

[Close]

BLAST of Clc00G01055 vs. NCBI nr
Match: XP_004136040.1 (heat shock factor-binding protein isoform X2 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 2.0e-25
Identity = 72/89 (80.90%), Postives = 74/89 (83.15%), Query Frame = 0


Query: 1  MDGHDSEDAKQSTADMTIFVQNLLQQMVSFIQ-------CEILYMGSRINELEQSINDLK 60
          MDGHDSEDAKQSTADMTIFVQNLLQQM S  Q        +I  MGSRINELEQSINDLK
Sbjct: 1  MDGHDSEDAKQSTADMTIFVQNLLQQMQSRFQTMSDSIITKIDEMGSRINELEQSINDLK 60

Query: 61 AEMGVEGSPSPLPPSKSSADEVKKEEGSA 83
          AEMGVEGSPSPLPPSK  ADEVKK+EGSA
Sbjct: 61 AEMGVEGSPSPLPPSKPVADEVKKDEGSA 89

[Close]

BLAST of Clc00G01055 vs. NCBI nr
Match: XP_004136039.1 (heat shock factor-binding protein isoform X1 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 2.7e-25
Identity = 74/111 (66.67%), Postives = 76/111 (68.47%), Query Frame = 0


Query: 1   MDGHDSEDAKQSTADMTIFVQNLLQQMVSFIQCEIL------------------------ 60
           MDGHDSEDAKQSTADMTIFVQNLLQQMVSF  C+ L                        
Sbjct: 1   MDGHDSEDAKQSTADMTIFVQNLLQQMVSFSYCKFLSEKFMSNKIFFMQQSRFQTMSDSI 60

Query: 61  -----YMGSRINELEQSINDLKAEMGVEGSPSPLPPSKSSADEVKKEEGSA 83
                 MGSRINELEQSINDLKAEMGVEGSPSPLPPSK  ADEVKK+EGSA
Sbjct: 61  ITKIDEMGSRINELEQSINDLKAEMGVEGSPSPLPPSKPVADEVKKDEGSA 111

[Close]

BLAST of Clc00G01055 vs. NCBI nr
Match: XP_022150885.1 (heat shock factor-binding protein 1 [Momordica charantia])

HSP 1 Score: 123.6 bits (309), Expect = 7.7e-25
Identity = 71/89 (79.78%), Postives = 74/89 (83.15%), Query Frame = 0


Query: 1  MDGHDSEDAKQSTADMTIFVQNLLQQMVSFIQ-------CEILYMGSRINELEQSINDLK 60
          MDGHDSEDAKQSTADMT+FVQNLLQQM S  Q        +I  MGSRINELEQSINDLK
Sbjct: 1  MDGHDSEDAKQSTADMTVFVQNLLQQMQSRFQTMSDSIITKIDEMGSRINELEQSINDLK 60

Query: 61 AEMGVEGSPSPLPPSKSSADEVKKEEGSA 83
          AEMGVEGSPSPLP SKS+ADE KKEEGSA
Sbjct: 61 AEMGVEGSPSPLPSSKSNADEGKKEEGSA 89

[Close]

BLAST of Clc00G01055 vs. ExPASy Swiss-Prot
Match: Q8GW48 (Heat shock factor-binding protein OS=Arabidopsis thaliana OX=3702 GN=HSBP PE=1 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.5e-18
Identity = 56/89 (62.92%), Postives = 62/89 (69.66%), Query Frame = 0


Query: 1  MDGHDSEDAKQSTADMTIFVQNLLQQMVSFIQ-------CEILYMGSRINELEQSINDLK 60
          MDGHDSED KQSTADMT FVQNLLQQM +  Q        +I  MG RINELEQSINDL+
Sbjct: 1  MDGHDSEDTKQSTADMTAFVQNLLQQMQTRFQTMSDSIITKIDDMGGRINELEQSINDLR 60

Query: 61 AEMGVEGSPSPLPPSKSSADEVKKEEGSA 83
          AEMGVEG+P   PP+  S DE K    S+
Sbjct: 61 AEMGVEGTP---PPASKSGDEPKTPASSS 86

[Close]

BLAST of Clc00G01055 vs. ExPASy TrEMBL
Match: A0A1S3BSN9 (heat shock factor-binding protein 1 OS=Cucumis melo OX=3656 GN=LOC103492833 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.6e-26
Identity = 73/89 (82.02%), Postives = 75/89 (84.27%), Query Frame = 0


Query: 1  MDGHDSEDAKQSTADMTIFVQNLLQQMVSFIQ-------CEILYMGSRINELEQSINDLK 60
          MDGHDSEDAKQSTADMTIFVQNLLQQM S  Q        +I  MGSRINELEQSINDLK
Sbjct: 1  MDGHDSEDAKQSTADMTIFVQNLLQQMQSRFQTMSDSIITKIDEMGSRINELEQSINDLK 60

Query: 61 AEMGVEGSPSPLPPSKSSADEVKKEEGSA 83
          AEMGVEGSPSPLPPSKS ADEVKK+EGSA
Sbjct: 61 AEMGVEGSPSPLPPSKSVADEVKKDEGSA 89

[Close]

BLAST of Clc00G01055 vs. ExPASy TrEMBL
Match: A0A6J1D9Q0 (heat shock factor-binding protein 1 OS=Momordica charantia OX=3673 GN=LOC111018928 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.7e-25
Identity = 71/89 (79.78%), Postives = 74/89 (83.15%), Query Frame = 0


Query: 1  MDGHDSEDAKQSTADMTIFVQNLLQQMVSFIQ-------CEILYMGSRINELEQSINDLK 60
          MDGHDSEDAKQSTADMT+FVQNLLQQM S  Q        +I  MGSRINELEQSINDLK
Sbjct: 1  MDGHDSEDAKQSTADMTVFVQNLLQQMQSRFQTMSDSIITKIDEMGSRINELEQSINDLK 60

Query: 61 AEMGVEGSPSPLPPSKSSADEVKKEEGSA 83
          AEMGVEGSPSPLP SKS+ADE KKEEGSA
Sbjct: 61 AEMGVEGSPSPLPSSKSNADEGKKEEGSA 89

[Close]

BLAST of Clc00G01055 vs. ExPASy TrEMBL
Match: A0A6J1JVW1 (heat shock factor-binding protein 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111488351 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 6.4e-25
Identity = 69/89 (77.53%), Postives = 74/89 (83.15%), Query Frame = 0


Query: 1  MDGHDSEDAKQSTADMTIFVQNLLQQMVSFIQ-------CEILYMGSRINELEQSINDLK 60
          MDGHDSED KQSTADMT+FVQNLLQQM S  Q        +I  MGSRINELEQSINDLK
Sbjct: 1  MDGHDSEDTKQSTADMTVFVQNLLQQMQSRFQTMSDSIITKIDEMGSRINELEQSINDLK 60

Query: 61 AEMGVEGSPSPLPPSKSSADEVKKEEGSA 83
          +EMGVEGSPSP+ PSKSSADEVKK+EGSA
Sbjct: 61 SEMGVEGSPSPMTPSKSSADEVKKDEGSA 89

[Close]

BLAST of Clc00G01055 vs. ExPASy TrEMBL
Match: A0A6J1GMG8 (heat shock factor-binding protein 1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111455787 PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 8.3e-25
Identity = 69/89 (77.53%), Postives = 74/89 (83.15%), Query Frame = 0


Query: 1  MDGHDSEDAKQSTADMTIFVQNLLQQMVSFIQ-------CEILYMGSRINELEQSINDLK 60
          MDGHDSED KQSTADMT+FVQNLLQQM S  Q        +I  MGSRINELEQSINDLK
Sbjct: 1  MDGHDSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIITKIDEMGSRINELEQSINDLK 60

Query: 61 AEMGVEGSPSPLPPSKSSADEVKKEEGSA 83
          +EMGVEGSPSP+ PSKSSADEVKK+EGSA
Sbjct: 61 SEMGVEGSPSPMTPSKSSADEVKKDEGSA 89

[Close]

BLAST of Clc00G01055 vs. ExPASy TrEMBL
Match: A0A6J1JXC9 (heat shock factor-binding protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111488351 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.6e-23
Identity = 66/86 (76.74%), Postives = 71/86 (82.56%), Query Frame = 0


Query: 1  MDGHDSEDAKQSTADMTIFVQNLLQQMVSFIQ-------CEILYMGSRINELEQSINDLK 60
          MDGHDSED KQSTADMT+FVQNLLQQM S  Q        +I  MGSRINELEQSINDLK
Sbjct: 1  MDGHDSEDTKQSTADMTVFVQNLLQQMQSRFQTMSDSIITKIDEMGSRINELEQSINDLK 60

Query: 61 AEMGVEGSPSPLPPSKSSADEVKKEE 80
          +EMGVEGSPSP+ PSKSSADEVKK+E
Sbjct: 61 SEMGVEGSPSPMTPSKSSADEVKKDE 86

[Close]

BLAST of Clc00G01055 vs. TAIR 10
Match: AT4G15802.1 (heat shock factor binding protein )

HSP 1 Score: 92.4 bits (228), Expect = 1.8e-19
Identity = 56/89 (62.92%), Postives = 62/89 (69.66%), Query Frame = 0


Query: 1  MDGHDSEDAKQSTADMTIFVQNLLQQMVSFIQ-------CEILYMGSRINELEQSINDLK 60
          MDGHDSED KQSTADMT FVQNLLQQM +  Q        +I  MG RINELEQSINDL+
Sbjct: 1  MDGHDSEDTKQSTADMTAFVQNLLQQMQTRFQTMSDSIITKIDDMGGRINELEQSINDLR 60

Query: 61 AEMGVEGSPSPLPPSKSSADEVKKEEGSA 83
          AEMGVEG+P   PP+  S DE K    S+
Sbjct: 61 AEMGVEGTP---PPASKSGDEPKTPASSS 86

The following BLAST results are available for this feature:

BLAST of Clc00G01055 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899813.1	1.1e-26	83.15	heat shock factor-binding protein isoform X1 [Benincasa hispida]	[more]
XP_008451602.1	5.3e-26	82.02	PREDICTED: heat shock factor-binding protein 1 [Cucumis melo]	[more]
XP_004136040.1	2.0e-25	80.90	heat shock factor-binding protein isoform X2 [Cucumis sativus]	[more]
XP_004136039.1	2.7e-25	66.67	heat shock factor-binding protein isoform X1 [Cucumis sativus]	[more]
XP_022150885.1	7.7e-25	79.78	heat shock factor-binding protein 1 [Momordica charantia]	[more]

BLAST of Clc00G01055 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GW48	2.5e-18	62.92	Heat shock factor-binding protein OS=Arabidopsis thaliana OX=3702 GN=HSBP PE=1 S...	[more]

BLAST of Clc00G01055 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BSN9	2.6e-26	82.02	heat shock factor-binding protein 1 OS=Cucumis melo OX=3656 GN=LOC103492833 PE=3...	[more]
A0A6J1D9Q0	3.7e-25	79.78	heat shock factor-binding protein 1 OS=Momordica charantia OX=3673 GN=LOC1110189...	[more]
A0A6J1JVW1	6.4e-25	77.53	heat shock factor-binding protein 1-like isoform X2 OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1GMG8	8.3e-25	77.53	heat shock factor-binding protein 1-like isoform X2 OS=Cucurbita moschata OX=366...	[more]
A0A6J1JXC9	1.6e-23	76.74	heat shock factor-binding protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 ...	[more]

BLAST of Clc00G01055 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G15802.1	1.8e-19	62.92	heat shock factor binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.5.430		coord: 11..49 e-value: 1.9E-7 score: 32.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..82
None	No IPR available	PANTHER	PTHR19424:SF8	HEAT SHOCK FACTOR-BINDING PROTEIN 1-LIKE	coord: 1..78
IPR009643	Heat shock factor binding 1	PANTHER	PTHR19424	HEAT SHOCK FACTOR BINDING PROTEIN 1	coord: 1..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc00G01055.1	Clc00G01055.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070370	cellular heat acclimation
biological_process	GO:0045892	negative regulation of transcription, DNA-templated
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003714	transcription corepressor activity