Cla97C11G224870 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C11G224870
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	DNA repair RAD52-like protein 2, chloroplastic
Location	Cla97Chr11: 30535990 .. 30538076 (+)
RNA-Seq Expression	Cla97C11G224870
Synteny	Cla97C11G224870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGTGGATCTTTCTCTTCCCCTTCATCATATGACACCTCTTCCTCTTCTTTCTAAGTTCCCACTCTCTGTTTGATTTTCTTCTTCTATGTTTTCTGTTATAGCCATTTTCTGCATTGTGGGCATTCGTTGGACATGTGTCCTTGTTGGCCACGGAAAAACACTCTATGGGTGTTGGTTTGGCATAGGGATATTGTGTTGTCTTGCTTTATGATGATTCTGAGTTTTTAGGCCTAAAATTGTTTTCTTTTATTTTGCTAAAAGGATTAGTGGAAGTACCACCTCTCTCAAATGTTCTTTGGGATTTTGAATTGTTCTTTGAGATTTATGATGATACTAGAGCTGGATCTTTCTATTACATTGTGGTTTTCGTGAATATCTTTCTTGTTCTTCTTCTATGTTAGTGGCCAAATTTACAGCTTCTTTGGATTTTTAAATAGGATATTGGGTGTAAAACTACTTAGTCTTGGATAAATGTTCTTAATCTGGATATGTAAAGACATATAAAACTATGCTGAATATTCACTAACGGTCCTATTTCTTTGTCTACATTCCTTTTGAATACAAGTTGTTCATAATTTACTGGGAGGGACCTTTCTCTCATGAGTTTTTGCATGTTTATTCTGTCTACTTAAACATAATTGATCCCACTATTTGGAGGCTCCTCTTCTTAATTTTAGGGCATCCAATTTTAATTTTTGTGCTTCTAAAGTCCCTGTGTAATCACACAAAATTTCAACAATTTTTTATCCAACATTTAAATAAGATTCCATATGTAACGTTCCATCAAAGCAGGGAGATTTACTTTCAATTTGAAGTCATTAGGTCTCTCTTGGAATTGTTGTCCTCTCGCTAGAATCATCTAAGTTTCCGGTCTAGTTCACATACTTGGGTTATTGAAACCTTCGTTTTCTATTAGCCCACTGCACGTCATTTCTTGCATTTTGTGGCTGTCCAATCCACTGATTCCACCTTGGGGTTGGGATGGTGTTTTTTGGTTGATCTTGATTGATTTGCAGGTATGGATTTTGTCTAAAATGTCTTCTTTCTTGATGTGCAGGTCTATTAAATCCTTGGGGTCGTTCTTGAAGGCATTCTTGTGCTTGTAAGCTACCTTCATCTCTGTTTTGTCCTCCATTGACTCCCAATTGTCTTATTTTCCTCCCATACTCCACATCTTTCTAAATATTCCACAATCCATACTCATTCGTATACTGTCCACAGAAGTTTCGACTGTCGGCAAGCAATCAACCATAGCTTCTAGAGACATTTTCTTTCGCGTTTGTTGATTTTGTCGCTAGTTTGGATCACGTCGCTGTCACCAAGAGCTCAAATTGACTGCCCTGATTCCAAATTTATGCCATTTAGTATTTGGTAAACACCGTGCATATTGGCGAGAGAGTTGGGTTTAACACAAGTCATCGTTGGTTGTCCCTGCTTTGCTTCATCGTTATTATGGCTCACCAAACCTATGCCCATTCCCAGCTCTCAGGGCCTCACCTCCCTGCATTATCCTCCCTGCCCTCTTCCTACTCTACTAGTGAGATTCGACTCCCCTTAATTTCTACCACTTCAAGACGACGCCATCTTCGTCTTGTCTGCTCCAGCAGTGATGCTAATGGTAGTAAGAAGGGAGTACCCAATTCCAACTATGTTGTTCCGCTCAACAAATCTTTTTCGCCAGCTAACTCATCCTGCATTACTCGACCCCTTGCTGAGATCCTCCGCGATCTTAACAAGAGAATCCCTGATAACATCGCTCAGAAAGCCCCTCATTCCGATACCCATGATCGTGCTCCCGCTACTTTCATCCCTTGGTTTCATGCTAATAGGATGCTGAGTTTCTACGCCCCTGGATGGTGTGGAGAAATACGAGATGTCATATTCTCAGACAATGGTAGTGTGACTGTGGTTTATCGTGTGACCGTTAGAGGATCGGATGGAGAGGCACACCGTGAATCGACTGGAACGGTATCAGCCAGCGATAGCAATATTGAAGATCCTGTTGCTGCTGCGGAGGAAATAGCTTTCTGCAAGGCTTGTGCAAGATTTGGCCTCGGTTTGTACCTCTATCATGAAGAATAA

mRNA sequence

ATGAAATATTTGGTAAACACCGTGCATATTGGCGAGAGAGTTGGGTTTAACACAAGTCATCGTTGGTTGTCCCTGCTTTGCTTCATCGTTATTATGGCTCACCAAACCTATGCCCATTCCCAGCTCTCAGGGCCTCACCTCCCTGCATTATCCTCCCTGCCCTCTTCCTACTCTACTAGTGAGATTCGACTCCCCTTAATTTCTACCACTTCAAGACGACGCCATCTTCGTCTTGTCTGCTCCAGCAGTGATGCTAATGGTAGTAAGAAGGGAGTACCCAATTCCAACTATGTTGTTCCGCTCAACAAATCTTTTTCGCCAGCTAACTCATCCTGCATTACTCGACCCCTTGCTGAGATCCTCCGCGATCTTAACAAGAGAATCCCTGATAACATCGCTCAGAAAGCCCCTCATTCCGATACCCATGATCGTGCTCCCGCTACTTTCATCCCTTGGTTTCATGCTAATAGGATGCTGAGTTTCTACGCCCCTGGATGGTGTGGAGAAATACGAGATGTCATATTCTCAGACAATGGTAGTGTGACTGTGGTTTATCGTGTGACCGTTAGAGGATCGGATGGAGAGGCACACCGTGAATCGACTGGAACGGTATCAGCCAGCGATAGCAATATTGAAGATCCTGTTGCTGCTGCGGAGGAAATAGCTTTCTGCAAGGCTTGTGCAAGATTTGGCCTCGGTTTGTACCTCTATCATGAAGAATAA

Coding sequence (CDS)

ATGAAATATTTGGTAAACACCGTGCATATTGGCGAGAGAGTTGGGTTTAACACAAGTCATCGTTGGTTGTCCCTGCTTTGCTTCATCGTTATTATGGCTCACCAAACCTATGCCCATTCCCAGCTCTCAGGGCCTCACCTCCCTGCATTATCCTCCCTGCCCTCTTCCTACTCTACTAGTGAGATTCGACTCCCCTTAATTTCTACCACTTCAAGACGACGCCATCTTCGTCTTGTCTGCTCCAGCAGTGATGCTAATGGTAGTAAGAAGGGAGTACCCAATTCCAACTATGTTGTTCCGCTCAACAAATCTTTTTCGCCAGCTAACTCATCCTGCATTACTCGACCCCTTGCTGAGATCCTCCGCGATCTTAACAAGAGAATCCCTGATAACATCGCTCAGAAAGCCCCTCATTCCGATACCCATGATCGTGCTCCCGCTACTTTCATCCCTTGGTTTCATGCTAATAGGATGCTGAGTTTCTACGCCCCTGGATGGTGTGGAGAAATACGAGATGTCATATTCTCAGACAATGGTAGTGTGACTGTGGTTTATCGTGTGACCGTTAGAGGATCGGATGGAGAGGCACACCGTGAATCGACTGGAACGGTATCAGCCAGCGATAGCAATATTGAAGATCCTGTTGCTGCTGCGGAGGAAATAGCTTTCTGCAAGGCTTGTGCAAGATTTGGCCTCGGTTTGTACCTCTATCATGAAGAATAA

Protein sequence

MKYLVNTVHIGERVGFNTSHRWLSLLCFIVIMAHQTYAHSQLSGPHLPALSSLPSSYSTSEIRLPLISTTSRRRHLRLVCSSSDANGSKKGVPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRAPATFIPWFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSASDSNIEDPVAAAEEIAFCKACARFGLGLYLYHEE

Homology

[Close]

BLAST of Cla97C11G224870 vs. NCBI nr
Match: XP_038897318.1 (DNA repair RAD52-like protein 2, chloroplastic [Benincasa hispida])

HSP 1 Score: 402.1 bits (1032), Expect = 3.3e-108
Identity = 199/209 (95.22%), Postives = 203/209 (97.13%), Query Frame = 0


Query: 32  MAHQTYAHSQLSGPHLPALSSLPSSYSTSEIRLPLISTTSRRRHLRLVCSSSDANGSKKG 91
           MA QTYAHSQLS PHLPAL SLPSSY+TSEIRLP+IST SRRR+LRLVCSSSDAN SKKG
Sbjct: 1   MALQTYAHSQLSRPHLPALLSLPSSYTTSEIRLPVISTASRRRYLRLVCSSSDANSSKKG 60

Query: 92  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRAPATFIP 151
           VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRAPATFIP
Sbjct: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRAPATFIP 120

Query: 152 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSASDSNI 211
           WFHANRMLSFYAPGWCGEIRDVIFSDNG VTVVYRVTVRGSDGEAHRESTGTVSA+DSNI
Sbjct: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGGVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180

Query: 212 EDPVAAAEEIAFCKACARFGLGLYLYHEE 241
           EDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 209

[Close]

BLAST of Cla97C11G224870 vs. NCBI nr
Match: XP_004145544.1 (DNA repair RAD52-like protein 2, chloroplastic [Cucumis sativus] >XP_031740574.1 DNA repair RAD52-like protein 2, chloroplastic [Cucumis sativus] >KGN55506.1 hypothetical protein Csa_011927 [Cucumis sativus])

HSP 1 Score: 401.0 bits (1029), Expect = 7.3e-108
Identity = 199/209 (95.22%), Postives = 204/209 (97.61%), Query Frame = 0


Query: 32  MAHQTYAHSQLSGPHLPALSSLPSSYSTSEIRLPLISTTSRRRHLRLVCSSSDANGSKKG 91
           MA QTYAHSQLSGPHL ALSS+ SSYSTSEIRLPL STTSRRRHLRLVCSSSDAN +KKG
Sbjct: 1   MALQTYAHSQLSGPHLTALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCSSSDANSNKKG 60

Query: 92  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRAPATFIP 151
           VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDT+DR+PATFIP
Sbjct: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIP 120

Query: 152 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSASDSNI 211
           WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSA+DSNI
Sbjct: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180

Query: 212 EDPVAAAEEIAFCKACARFGLGLYLYHEE 241
           EDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 209

[Close]

BLAST of Cla97C11G224870 vs. NCBI nr
Match: XP_008452970.1 (PREDICTED: uncharacterized protein LOC103493818 [Cucumis melo] >XP_016901316.1 PREDICTED: uncharacterized protein LOC103493818 [Cucumis melo] >KAA0064645.1 uncharacterized protein E6C27_scaffold255G003690 [Cucumis melo var. makuwa] >TYK19947.1 uncharacterized protein E5676_scaffold134G00600 [Cucumis melo var. makuwa])

HSP 1 Score: 395.6 bits (1015), Expect = 3.1e-106
Identity = 197/209 (94.26%), Postives = 200/209 (95.69%), Query Frame = 0


Query: 32  MAHQTYAHSQLSGPHLPALSSLPSSYSTSEIRLPLISTTSRRRHLRLVCSSSDANGSKKG 91
           MA QTYAHSQL GPH  ALSS+ SSYSTSEIRLPL STTSRR HLRLVCSSSDAN SKKG
Sbjct: 1   MALQTYAHSQLLGPHPTALSSIHSSYSTSEIRLPLSSTTSRRPHLRLVCSSSDANSSKKG 60

Query: 92  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRAPATFIP 151
           VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDR+P TFIP
Sbjct: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRSPTTFIP 120

Query: 152 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSASDSNI 211
           WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSA+DSNI
Sbjct: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180

Query: 212 EDPVAAAEEIAFCKACARFGLGLYLYHEE 241
           EDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 209

[Close]

BLAST of Cla97C11G224870 vs. NCBI nr
Match: XP_022940851.1 (DNA repair RAD52-like protein 2, chloroplastic [Cucurbita moschata] >XP_022940852.1 DNA repair RAD52-like protein 2, chloroplastic [Cucurbita moschata] >XP_022940853.1 DNA repair RAD52-like protein 2, chloroplastic [Cucurbita moschata] >KAG6608636.1 DNA repair RAD52-like protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037953.1 DNA repair RAD52-like protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 370.9 bits (951), Expect = 8.1e-99
Identity = 188/209 (89.95%), Postives = 193/209 (92.34%), Query Frame = 0


Query: 32  MAHQTYAHSQLSGPHLPALSSLPSSYSTSEIRLPLISTTSRRRHLRLVCSSSDANGSKKG 91
           MA QTYAHSQL GP LPA S LPSSYS SEIRLP IST + RRHL LVCSSSDA+G KKG
Sbjct: 1   MALQTYAHSQLLGPRLPAFSFLPSSYSVSEIRLPQISTAT-RRHLHLVCSSSDASG-KKG 60

Query: 92  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRAPATFIP 151
           VPN+NYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIA K PHSD  +R PATFIP
Sbjct: 61  VPNTNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAPKVPHSDPQNRPPATFIP 120

Query: 152 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSASDSNI 211
           WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSA+DSNI
Sbjct: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180

Query: 212 EDPVAAAEEIAFCKACARFGLGLYLYHEE 241
           EDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 207

[Close]

BLAST of Cla97C11G224870 vs. NCBI nr
Match: XP_023522333.1 (DNA repair RAD52-like protein 2, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023522340.1 DNA repair RAD52-like protein 2, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023522347.1 DNA repair RAD52-like protein 2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 367.9 bits (943), Expect = 6.9e-98
Identity = 187/209 (89.47%), Postives = 192/209 (91.87%), Query Frame = 0


Query: 32  MAHQTYAHSQLSGPHLPALSSLPSSYSTSEIRLPLISTTSRRRHLRLVCSSSDANGSKKG 91
           MA QTYAHSQL GP LPA S LPSSYS SEIRLP IST + RRHL LVCSSSDA+G KKG
Sbjct: 1   MALQTYAHSQLLGPRLPAFSFLPSSYSVSEIRLPQISTAT-RRHLHLVCSSSDASG-KKG 60

Query: 92  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRAPATFIP 151
           VPN+NYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIA K P SD  +R PATFIP
Sbjct: 61  VPNTNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAPKVPQSDPQNRPPATFIP 120

Query: 152 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSASDSNI 211
           WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSA+DSNI
Sbjct: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180

Query: 212 EDPVAAAEEIAFCKACARFGLGLYLYHEE 241
           EDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 207

[Close]

BLAST of Cla97C11G224870 vs. ExPASy Swiss-Prot
Match: Q9FIJ4 (DNA repair RAD52-like protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RAD52-2 PE=1 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 2.7e-60
Identity = 126/215 (58.60%), Postives = 152/215 (70.70%), Query Frame = 0


Query: 29  IVIMAHQTYAHSQLSGPHLPALSSLPSSYSTSEIRLPLISTTSRRRHLRLVCSSSDAN-- 88
           + +   QT A   +S P          S + + I+L    T +  R +R  CS       
Sbjct: 1   MALQVQQTSAAFTISSP----------STAAARIKLSPFRTVAVNRGVR--CSGGGVGGG 60

Query: 89  --GSKKGVPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDR 148
             G KK VPNSNYVVP++K    ++SS ITRPL EILRDLNK+IPDNI  K+    +   
Sbjct: 61  DAGKKKAVPNSNYVVPIDKF---SSSSSITRPLIEILRDLNKKIPDNIV-KSHDPPSTSA 120

Query: 149 APATFIPWFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTV 208
           A + FIPW+HANRMLSFYAPGWCGE+RDVIFS+NG+VTVVYR+T+RGSDGEAHRESTGTV
Sbjct: 121 ATSGFIPWYHANRMLSFYAPGWCGEVRDVIFSENGNVTVVYRLTIRGSDGEAHRESTGTV 180

Query: 209 SASDSNIEDPVAAAEEIAFCKACARFGLGLYLYHE 240
           + +D +IEDPV AAEEIAFC+ACARFGLGLYLYHE
Sbjct: 181 TTTDDHIEDPVTAAEEIAFCRACARFGLGLYLYHE 199

[Close]

BLAST of Cla97C11G224870 vs. ExPASy Swiss-Prot
Match: Q9FVV7 (DNA repair RAD52-like protein 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RAD52-1 PE=1 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.7e-30
Identity = 66/132 (50.00%), Postives = 90/132 (68.18%), Query Frame = 0


Query: 110 SSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRAPATFIPWFHANRMLSFYAPGWCGE 169
           +S I+RPLAEIL++LNK++PD++ +    +   D     +IPW   NR+++ +AP W GE
Sbjct: 47  TSGISRPLAEILKELNKKVPDSVIR----TRVEDGCSIKYIPWHIVNRIMNMHAPEWSGE 106

Query: 170 IRDVIFS-DNGSVTVVYRVTVRGSDGEAHRESTGTVSASDSNIEDPVAAAEEIAFCKACA 229
           +R V +S D  +VTV YRVT+ G+D E  RESTGT S  D    D V  AE +AF +ACA
Sbjct: 107 VRSVTYSPDGNTVTVAYRVTLYGTDAEIFRESTGTTSVDDKGYGDAVQKAEAMAFRRACA 166

Query: 230 RFGLGLYLYHEE 241
           RFGLGL+LYHE+
Sbjct: 167 RFGLGLHLYHED 174

[Close]

BLAST of Cla97C11G224870 vs. ExPASy TrEMBL
Match: A0A0A0L5X0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G663650 PE=4 SV=1)

HSP 1 Score: 401.0 bits (1029), Expect = 3.6e-108
Identity = 199/209 (95.22%), Postives = 204/209 (97.61%), Query Frame = 0


Query: 32  MAHQTYAHSQLSGPHLPALSSLPSSYSTSEIRLPLISTTSRRRHLRLVCSSSDANGSKKG 91
           MA QTYAHSQLSGPHL ALSS+ SSYSTSEIRLPL STTSRRRHLRLVCSSSDAN +KKG
Sbjct: 1   MALQTYAHSQLSGPHLTALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCSSSDANSNKKG 60

Query: 92  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRAPATFIP 151
           VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDT+DR+PATFIP
Sbjct: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIP 120

Query: 152 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSASDSNI 211
           WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSA+DSNI
Sbjct: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180

Query: 212 EDPVAAAEEIAFCKACARFGLGLYLYHEE 241
           EDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 209

[Close]

BLAST of Cla97C11G224870 vs. ExPASy TrEMBL
Match: A0A1S4DZ99 (uncharacterized protein LOC103493818 OS=Cucumis melo OX=3656 GN=LOC103493818 PE=4 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 1.5e-106
Identity = 197/209 (94.26%), Postives = 200/209 (95.69%), Query Frame = 0


Query: 32  MAHQTYAHSQLSGPHLPALSSLPSSYSTSEIRLPLISTTSRRRHLRLVCSSSDANGSKKG 91
           MA QTYAHSQL GPH  ALSS+ SSYSTSEIRLPL STTSRR HLRLVCSSSDAN SKKG
Sbjct: 1   MALQTYAHSQLLGPHPTALSSIHSSYSTSEIRLPLSSTTSRRPHLRLVCSSSDANSSKKG 60

Query: 92  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRAPATFIP 151
           VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDR+P TFIP
Sbjct: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRSPTTFIP 120

Query: 152 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSASDSNI 211
           WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSA+DSNI
Sbjct: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180

Query: 212 EDPVAAAEEIAFCKACARFGLGLYLYHEE 241
           EDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 209

[Close]

BLAST of Cla97C11G224870 vs. ExPASy TrEMBL
Match: A0A5A7VFI5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00600 PE=4 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 1.5e-106
Identity = 197/209 (94.26%), Postives = 200/209 (95.69%), Query Frame = 0


Query: 32  MAHQTYAHSQLSGPHLPALSSLPSSYSTSEIRLPLISTTSRRRHLRLVCSSSDANGSKKG 91
           MA QTYAHSQL GPH  ALSS+ SSYSTSEIRLPL STTSRR HLRLVCSSSDAN SKKG
Sbjct: 1   MALQTYAHSQLLGPHPTALSSIHSSYSTSEIRLPLSSTTSRRPHLRLVCSSSDANSSKKG 60

Query: 92  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRAPATFIP 151
           VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDR+P TFIP
Sbjct: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRSPTTFIP 120

Query: 152 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSASDSNI 211
           WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSA+DSNI
Sbjct: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180

Query: 212 EDPVAAAEEIAFCKACARFGLGLYLYHEE 241
           EDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 209

[Close]

BLAST of Cla97C11G224870 vs. ExPASy TrEMBL
Match: A0A6J1FJJ9 (DNA repair RAD52-like protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111446320 PE=4 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 3.9e-99
Identity = 188/209 (89.95%), Postives = 193/209 (92.34%), Query Frame = 0


Query: 32  MAHQTYAHSQLSGPHLPALSSLPSSYSTSEIRLPLISTTSRRRHLRLVCSSSDANGSKKG 91
           MA QTYAHSQL GP LPA S LPSSYS SEIRLP IST + RRHL LVCSSSDA+G KKG
Sbjct: 1   MALQTYAHSQLLGPRLPAFSFLPSSYSVSEIRLPQISTAT-RRHLHLVCSSSDASG-KKG 60

Query: 92  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRAPATFIP 151
           VPN+NYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIA K PHSD  +R PATFIP
Sbjct: 61  VPNTNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAPKVPHSDPQNRPPATFIP 120

Query: 152 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSASDSNI 211
           WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSA+DSNI
Sbjct: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180

Query: 212 EDPVAAAEEIAFCKACARFGLGLYLYHEE 241
           EDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 207

[Close]

BLAST of Cla97C11G224870 vs. ExPASy TrEMBL
Match: A0A6J1J3T8 (DNA repair RAD52-like protein 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481079 PE=4 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 6.3e-97
Identity = 184/209 (88.04%), Postives = 191/209 (91.39%), Query Frame = 0


Query: 32  MAHQTYAHSQLSGPHLPALSSLPSSYSTSEIRLPLISTTSRRRHLRLVCSSSDANGSKKG 91
           MA QTYAH QL GP LPA S LPSSYS SEIRLP IST + RRHL LVCSSS+A+G KKG
Sbjct: 1   MALQTYAHFQLLGPRLPAFSFLPSSYSVSEIRLPQISTAT-RRHLHLVCSSSEASG-KKG 60

Query: 92  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRAPATFIP 151
           VPN+NYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIA K P SD  +R PATFIP
Sbjct: 61  VPNTNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAPKVPQSDPQNRPPATFIP 120

Query: 152 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSASDSNI 211
           WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSA+DSN+
Sbjct: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNV 180

Query: 212 EDPVAAAEEIAFCKACARFGLGLYLYHEE 241
           EDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 207

[Close]

BLAST of Cla97C11G224870 vs. TAIR 10
Match: AT5G47870.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: cobalt ion binding (TAIR:AT1G71310.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 233.4 bits (594), Expect = 1.9e-61
Identity = 126/215 (58.60%), Postives = 152/215 (70.70%), Query Frame = 0


Query: 29  IVIMAHQTYAHSQLSGPHLPALSSLPSSYSTSEIRLPLISTTSRRRHLRLVCSSSDAN-- 88
           + +   QT A   +S P          S + + I+L    T +  R +R  CS       
Sbjct: 1   MALQVQQTSAAFTISSP----------STAAARIKLSPFRTVAVNRGVR--CSGGGVGGG 60

Query: 89  --GSKKGVPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDR 148
             G KK VPNSNYVVP++K    ++SS ITRPL EILRDLNK+IPDNI  K+    +   
Sbjct: 61  DAGKKKAVPNSNYVVPIDKF---SSSSSITRPLIEILRDLNKKIPDNIV-KSHDPPSTSA 120

Query: 149 APATFIPWFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTV 208
           A + FIPW+HANRMLSFYAPGWCGE+RDVIFS+NG+VTVVYR+T+RGSDGEAHRESTGTV
Sbjct: 121 ATSGFIPWYHANRMLSFYAPGWCGEVRDVIFSENGNVTVVYRLTIRGSDGEAHRESTGTV 180

Query: 209 SASDSNIEDPVAAAEEIAFCKACARFGLGLYLYHE 240
           + +D +IEDPV AAEEIAFC+ACARFGLGLYLYHE
Sbjct: 181 TTTDDHIEDPVTAAEEIAFCRACARFGLGLYLYHE 199

[Close]

BLAST of Cla97C11G224870 vs. TAIR 10
Match: AT1G71310.2 (cobalt ion binding )

HSP 1 Score: 133.3 bits (334), Expect = 2.7e-31
Identity = 66/132 (50.00%), Postives = 90/132 (68.18%), Query Frame = 0


Query: 110 SSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRAPATFIPWFHANRMLSFYAPGWCGE 169
           +S I+RPLAEIL++LNK++PD++ +    +   D     +IPW   NR+++ +AP W GE
Sbjct: 47  TSGISRPLAEILKELNKKVPDSVIR----TRVEDGCSIKYIPWHIVNRIMNMHAPEWSGE 106

Query: 170 IRDVIFS-DNGSVTVVYRVTVRGSDGEAHRESTGTVSASDSNIEDPVAAAEEIAFCKACA 229
           +R V +S D  +VTV YRVT+ G+D E  RESTGT S  D    D V  AE +AF +ACA
Sbjct: 107 VRSVTYSPDGNTVTVAYRVTLYGTDAEIFRESTGTTSVDDKGYGDAVQKAEAMAFRRACA 166

Query: 230 RFGLGLYLYHEE 241
           RFGLGL+LYHE+
Sbjct: 167 RFGLGLHLYHED 174

[Close]

BLAST of Cla97C11G224870 vs. TAIR 10
Match: AT1G71310.1 (cobalt ion binding )

HSP 1 Score: 133.3 bits (334), Expect = 2.7e-31
Identity = 66/132 (50.00%), Postives = 90/132 (68.18%), Query Frame = 0


Query: 110 SSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRAPATFIPWFHANRMLSFYAPGWCGE 169
           +S I+RPLAEIL++LNK++PD++ +    +   D     +IPW   NR+++ +AP W GE
Sbjct: 47  TSGISRPLAEILKELNKKVPDSVIR----TRVEDGCSIKYIPWHIVNRIMNMHAPEWSGE 106

Query: 170 IRDVIFS-DNGSVTVVYRVTVRGSDGEAHRESTGTVSASDSNIEDPVAAAEEIAFCKACA 229
           +R V +S D  +VTV YRVT+ G+D E  RESTGT S  D    D V  AE +AF +ACA
Sbjct: 107 VRSVTYSPDGNTVTVAYRVTLYGTDAEIFRESTGTTSVDDKGYGDAVQKAEAMAFRRACA 166

Query: 230 RFGLGLYLYHEE 241
           RFGLGL+LYHE+
Sbjct: 167 RFGLGLHLYHED 174

[Close]

BLAST of Cla97C11G224870 vs. TAIR 10
Match: AT1G71310.3 (cobalt ion binding )

HSP 1 Score: 82.4 bits (202), Expect = 5.4e-16
Identity = 39/87 (44.83%), Postives = 59/87 (67.82%), Query Frame = 0


Query: 110 SSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRAPATFIPWFHANRMLSFYAPGWCGE 169
           +S I+RPLAEIL++LNK++PD++ +    +   D     +IPW   NR+++ +AP W GE
Sbjct: 47  TSGISRPLAEILKELNKKVPDSVIR----TRVEDGCSIKYIPWHIVNRIMNMHAPEWSGE 106

Query: 170 IRDVIFS-DNGSVTVVYRVTVRGSDGE 196
           +R V +S D  +VTV YRVT+ G+D E
Sbjct: 107 VRSVTYSPDGNTVTVAYRVTLYGTDAE 129

The following BLAST results are available for this feature:

BLAST of Cla97C11G224870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038897318.1	3.3e-108	95.22	DNA repair RAD52-like protein 2, chloroplastic [Benincasa hispida]	[more]
XP_004145544.1	7.3e-108	95.22	DNA repair RAD52-like protein 2, chloroplastic [Cucumis sativus] >XP_031740574.1...	[more]
XP_008452970.1	3.1e-106	94.26	PREDICTED: uncharacterized protein LOC103493818 [Cucumis melo] >XP_016901316.1 P...	[more]
XP_022940851.1	8.1e-99	89.95	DNA repair RAD52-like protein 2, chloroplastic [Cucurbita moschata] >XP_02294085...	[more]
XP_023522333.1	6.9e-98	89.47	DNA repair RAD52-like protein 2, chloroplastic [Cucurbita pepo subsp. pepo] >XP_...	[more]

BLAST of Cla97C11G224870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FIJ4	2.7e-60	58.60	DNA repair RAD52-like protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9FVV7	3.7e-30	50.00	DNA repair RAD52-like protein 1, mitochondrial OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Cla97C11G224870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5X0	3.6e-108	95.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G663650 PE=4 SV=1	[more]
A0A1S4DZ99	1.5e-106	94.26	uncharacterized protein LOC103493818 OS=Cucumis melo OX=3656 GN=LOC103493818 PE=...	[more]
A0A5A7VFI5	1.5e-106	94.26	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1FJJ9	3.9e-99	89.95	DNA repair RAD52-like protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1J3T8	6.3e-97	88.04	DNA repair RAD52-like protein 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of Cla97C11G224870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G47870.1	1.9e-61	58.60	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G71310.2	2.7e-31	50.00	cobalt ion binding	[more]
AT1G71310.1	2.7e-31	50.00	cobalt ion binding	[more]
AT1G71310.3	5.4e-16	44.83	cobalt ion binding	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 237..240
None	No IPR available	PANTHER	PTHR34050:SF3	DNA REPAIR RAD52-LIKE PROTEIN 2, CHLOROPLASTIC	coord: 82..240
IPR037489	DNA repair RAD52-like protein	PANTHER	PTHR34050	FAMILY NOT NAMED	coord: 82..240

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C11G224870.2	Cla97C11G224870.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000724	double-strand break repair via homologous recombination
molecular_function	GO:0003677	DNA binding