Cla97C11G224800 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C11G224800
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	Small nuclear ribonucleoprotein Sm D3
Location	Cla97Chr11: 30452731 .. 30455530 (+)
RNA-Seq Expression	Cla97C11G224800
Synteny	Cla97C11G224800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAGGAGCTTGGGAATTCCAGTGAAGCTACTCCATGAGGCCGCCGGCCACGTTGTATCGGTGGAGCTTAAAAGCGGTGAGCTTTACAGAGGAAGTATGATCGAGTGTGAGGATAACTGGAACTGCCAGCTCGAAAACATCACCTACACTGCTAAGGTTCTCATCTCTCTCTCTTTTTTTGGCCTTTTGTTGTTCATCATTAGATTATTCAATTTCTGTTTGTTAGTTGAATCTTTACGTCTTTTGGTCTTGGCTTTAGTTAATATCGTTCATTTTGCTTCTATATCTCTAAAGCTGACCACTTGAATATATAGTTCAAGTACTTTTTGAAATTTGTATAGAACCCTAATTTGGCGTAGTTTCCAGGAATTTCTTGCTTCAAAGGCTGCGATCCCTCTCTTTTCTCTTTTCTTAGTCTTTTTTTTTTTTTTTTTAATTTATAATTTTAATACAAAATCTGCGTAGAAAATGAAATTAACGTCGTTCGAACGCCAGAAAATTGGGAGTAGGAAACACTCTCCATGTCGTTACTTTCAACAAATAAAAGGAACAACAATTGCATTTAAACCCCACAGACCTGACATGTATGTTCCAAACCCAAAAGTGTAGCAATTGTCTAATGAGACTGAAAATCGGAAAAAATATGAAAAGAGTGCATTCACTGGTCATTAATGGTGACCCCAACCTCACACCCAGGTTCGATGGTGACGAAGGTAAAACTGGTTCACTACATCTGTAGAGCTGAATAAGTCAATAACTCGAATGTGGGTGCGAATCCGTCCCAGGTTGTAATGTGGGCATTCTTATTGGTCCCGTGACCCTCAATCTCTAGTCTTTGGTGCCACAACCCAAATTGTAACTTTCTCAAGGTTCTTAACATTTTTGGAGGAGAGAGTAGAGTAATCCTGATCTTATGGATTTGCTTTTGCGTATCTTCTGACTTCTAGGCCTGACTTTTTTGGTTTTGTTGCTGTGCTTCTGGTTGTTCTGAATCTCCAAAATGAATCTGGGACAGTGTGTGAAAAGGAGATCTCTATGATTGAGTACCCAGCTTCTTCTTTCAGGAAACCAAAATGGCATGATCTTGATTGCAAAATCAGGATTGATTAAATAAACTAGGGACTAATGTTAACTGTGCACGTCGATTCCTTTCCTCCCGAGTGCGTCGTCTAATTGCAACTTTCTTGGTATGCAATTCACAATCACCAAATTGAATAGGAGAGATTGGCATTATCATAGATTCATATTTCTTGCTATAGACTTTTCAAATAGATTAAGGTTTACTTTTACTAATTTTCTTTGATAATCGATTAGTGTTTTGCTTATGTTATGGTTATTGCTGAATGTCTCTGAGTTTTTCCCCCTTTGCTTGCGTGTATATTATTAAGAGTCATGTTCTTTGGGTTTACTTTATGGGTTTTCTTCTATAGGATGGGAAGGTGTCACAACTTGAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGTATCTGTACCATCTCTTGTGTTAGATTATCCAATTACTTTCTGAGTTTTTATTCAAGGGATTTCTTATAGGATTTGGTTGGCATGCTGACATCTGTTCGTACATGACAGGTTTATGGTCATACCAGACATGCTAAAGAATGCTCCAATGTTCAAGCGTCTTGATGCTAGAATTAAAGTATTTCAACTTAAATACCTGTGAATTTTAATCCGGATGGAATCCTTGTTCGTTTTCTCTTTTTCCTAACCCATGCTTTCTGGATCTTGAAGGGTAAGGGTGCCTCGCTTGGTGTTGGCAGGGGCAGGGCTGTTGCTATGCGAGCTAAAGTAAGTCCTATGCATCTTAATTTTTGTACGGTGGTTATTTATTTCCTGGACATGTTTTGAATCAGTATGAAGATCAACTTTGTGCATTTTTTTCCACACATGAGAGGGAAGGATATGATCATTGCTTGTGTATAAGAAATTAAAGATTTATTTTAGTTTTCAAGTTTCTTAATCATCAATTTGGAAGATATTAGGGAATGTTTATTGGCACTATGACCTTCGCAATTCTCTCTTGAAGGAATCTAGAAGTTAGATTCCTTTGCACAGCACGCATGAGTGGTTGTGACCTATGAAATTACTTGTTTGTATTTATGTTTAAAAAATCAGGTTGATGATAGATTACGATGGAAAACAATTATAGAGCATGTCACAAAAATTTTGCACATTTATAAATTTGCAAAAATCAAAACAAATATCCTCTCTTTTTCAGGCTCAAGCTGCTGGCCGTGGAAGTGCACCTGGTCGGGGTGCTGCACCATCTGCCCGAAGGTGATGAAACCATGAATATAGTTTGTTATATCCTTAGTTGAAGCCTAGAAAGTCATTGGAATATTGACCATCAAGTTTCATTAGTTCCGGTATTGACATCCTCAACATTGAAGGAAGGCTATGCGTTGTTCATTTTTGTTGAAAATGGGCTAATGTCATCAACTTGATAATCTACTTTTTACTTGAGCCCATTTTATGTTGAGATCGAACTTTCCTTTACCCCCCATCTTCATCTTTGTTATGTATGTATCGGATGTTCTTTGCTTCTTATCACCATAGGAGTATTGTCTTTGTGCCATCTATTCTACTTTAATTGTTGGCTGTTTGTTGTGGGGTAGGCTATGCGTCTATGATTATGAGACTAGGGAAGTTATTATCAACATCTCCATGCAATTTACTTGCTTGGAATTACCTTCCTCAGAATAAATCCCTACCCAAATGGAGGGAGATCTGATTTTGAACTTTTGAATTTAAAATATCAAGTTTGAAATTTAGAGTT

mRNA sequence

ATGAGCAGGAGCTTGGGAATTCCAGTGAAGCTACTCCATGAGGCCGCCGGCCACGTTGTATCGGTGGAGCTTAAAAGCGGTGAGCTTTACAGAGGAAGTATGATCGAGTGTGAGGATAACTGGAACTGCCAGCTCGAAAACATCACCTACACTGCTAAGGATGGGAAGGTGTCACAACTTGAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGTTTATGGTCATACCAGACATGCTAAAGAATGCTCCAATGTTCAAGCGTCTTGATGCTAGAATTAAAGGTAAGGGTGCCTCGCTTGGTGTTGGCAGGGGCAGGGCTGTTGCTATGCGAGCTAAAGCTCAAGCTGCTGGCCGTGGAAGTGCACCTGGTCGGGGTGCTGCACCATCTGCCCGAAGTTCCGGTATTGACATCCTCAACATTGAAGGAAGGCTATGCGTTGTTCATTTTTGTTGAAAATGGGCTAATGTCATCAACTTGATAATCTACTTTTTACTTGAGCCCATTTTATGTTGAGATCGAACTTTCCTTTACCCCCCATCTTCATCTTTGTTATGTATGTATCGGATGTTCTTTGCTTCTTATCACCATAGGAGTATTGTCTTTGTGCCATCTATTCTACTTTAATTGTTGGCTGTTTGTTGTGGGGTAGGCTATGCGTCTATGATTATGAGACTAGGGAAGTTATTATCAACATCTCCATGCAATTTACTTGCTTGGAATTACCTTCCTCAGAATAAATCCCTACCCAAATGGAGGGAGATCTGATTTTGAACTTTTGAATTTAAAATATCAAGTTTGAAATTTAGAGTT

Coding sequence (CDS)

ATGAGCAGGAGCTTGGGAATTCCAGTGAAGCTACTCCATGAGGCCGCCGGCCACGTTGTATCGGTGGAGCTTAAAAGCGGTGAGCTTTACAGAGGAAGTATGATCGAGTGTGAGGATAACTGGAACTGCCAGCTCGAAAACATCACCTACACTGCTAAGGATGGGAAGGTGTCACAACTTGAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGTTTATGGTCATACCAGACATGCTAAAGAATGCTCCAATGTTCAAGCGTCTTGATGCTAGAATTAAAGGTAAGGGTGCCTCGCTTGGTGTTGGCAGGGGCAGGGCTGTTGCTATGCGAGCTAAAGCTCAAGCTGCTGGCCGTGGAAGTGCACCTGGTCGGGGTGCTGCACCATCTGCCCGAAGTTCCGGTATTGACATCCTCAACATTGAAGGAAGGCTATGCGTTGTTCATTTTTGTTGA

Protein sequence

MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAAPSARSSGIDILNIEGRLCVVHFC

Homology

[Close]

BLAST of Cla97C11G224800 vs. NCBI nr
Match: XP_038896140.1 (small nuclear ribonucleoprotein SmD3a-like [Benincasa hispida])

HSP 1 Score: 254.2 bits (648), Expect = 6.9e-64
Identity = 130/131 (99.24%), Postives = 130/131 (99.24%), Query Frame = 0


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120

Query: 121 APGRGAAPSAR 132
           APGRGAAPS R
Sbjct: 121 APGRGAAPSGR 131

[Close]

BLAST of Cla97C11G224800 vs. NCBI nr
Match: KAA0064637.1 (small nuclear ribonucleoprotein SmD3a-like [Cucumis melo var. makuwa] >TYK19955.1 small nuclear ribonucleoprotein SmD3a-like [Cucumis melo var. makuwa])

HSP 1 Score: 252.3 bits (643), Expect = 2.6e-63
Identity = 129/131 (98.47%), Postives = 129/131 (98.47%), Query Frame = 0


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 44  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 103

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS
Sbjct: 104 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 163

Query: 121 APGRGAAPSAR 132
           APGRGA PS R
Sbjct: 164 APGRGAPPSGR 174

[Close]

BLAST of Cla97C11G224800 vs. NCBI nr
Match: XP_008452950.1 (PREDICTED: small nuclear ribonucleoprotein SmD3a-like [Cucumis melo])

HSP 1 Score: 252.3 bits (643), Expect = 2.6e-63
Identity = 129/131 (98.47%), Postives = 129/131 (98.47%), Query Frame = 0


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120

Query: 121 APGRGAAPSAR 132
           APGRGA PS R
Sbjct: 121 APGRGAPPSGR 131

[Close]

BLAST of Cla97C11G224800 vs. NCBI nr
Match: XP_022151728.1 (small nuclear ribonucleoprotein SmD3b-like [Momordica charantia] >XP_022151729.1 small nuclear ribonucleoprotein SmD3b-like [Momordica charantia] >XP_022151731.1 small nuclear ribonucleoprotein SmD3b-like [Momordica charantia])

HSP 1 Score: 250.8 bits (639), Expect = 7.7e-63
Identity = 129/131 (98.47%), Postives = 129/131 (98.47%), Query Frame = 0


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120

Query: 121 APGRGAAPSAR 132
           A GRGA PSAR
Sbjct: 121 ATGRGAMPSAR 131

[Close]

BLAST of Cla97C11G224800 vs. NCBI nr
Match: XP_004145538.1 (small nuclear ribonucleoprotein SmD3a [Cucumis sativus] >KGN55496.1 hypothetical protein Csa_012724 [Cucumis sativus])

HSP 1 Score: 250.0 bits (637), Expect = 1.3e-62
Identity = 128/131 (97.71%), Postives = 128/131 (97.71%), Query Frame = 0


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
           EHVFIRGSKV FMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS
Sbjct: 61  EHVFIRGSKVSFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120

Query: 121 APGRGAAPSAR 132
           APGRGA PS R
Sbjct: 121 APGRGAPPSGR 131

[Close]

BLAST of Cla97C11G224800 vs. ExPASy Swiss-Prot
Match: Q9LM92 (Small nuclear ribonucleoprotein SmD3b OS=Arabidopsis thaliana OX=3702 GN=SMD3B PE=2 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 3.4e-53
Identity = 111/132 (84.09%), Postives = 119/132 (90.15%), Query Frame = 0


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEA+GH+V+VELKSGELYRGSMIECEDNWNCQLE+ITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAK-AQAAGRG 120
           EHVFIRGSKVRFMVIPD+LK+APMFKRLDARIKGK +SLGVGRGR  AMR K A   GRG
Sbjct: 61  EHVFIRGSKVRFMVIPDILKHAPMFKRLDARIKGKSSSLGVGRGRG-AMRGKPAAGPGRG 120

Query: 121 SAPGRGAAPSAR 132
           +  GRGA P  R
Sbjct: 121 TG-GRGAVPPVR 130

[Close]

BLAST of Cla97C11G224800 vs. ExPASy Swiss-Prot
Match: Q9S7E6 (Small nuclear ribonucleoprotein SmD3a OS=Arabidopsis thaliana OX=3702 GN=SMD3A PE=2 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 9.8e-53
Identity = 108/131 (82.44%), Postives = 114/131 (87.02%), Query Frame = 0


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHE++GH+VSVE+KSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
           EHVFIRGS VRF+VIPDMLKNAPMFK  D R KGK ASLGVGRGR  AMRAK    GRG+
Sbjct: 61  EHVFIRGSLVRFLVIPDMLKNAPMFK--DVRGKGKSASLGVGRGRGAAMRAK--GTGRGT 120

Query: 121 APGRGAAPSAR 132
             GRGA P  R
Sbjct: 121 GGGRGAVPPVR 127

[Close]

BLAST of Cla97C11G224800 vs. ExPASy Swiss-Prot
Match: P62318 (Small nuclear ribonucleoprotein Sm D3 OS=Homo sapiens OX=9606 GN=SNRPD3 PE=1 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 5.9e-34
Identity = 68/122 (55.74%), Postives = 91/122 (74.59%), Query Frame = 0


Query: 4   SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHV 63
           S+G+P+K+LHEA GH+V+ E  +GE+YRG +IE EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2   SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61

Query: 64  FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPG 123
           +IRGSK+RF+++PDMLKNAPM K +    K K    G GRG+A  ++A+  A GRG   G
Sbjct: 62  YIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGSGAGRGKAAILKAQVAARGRGRGMG 119

Query: 124 RG 126
           RG
Sbjct: 122 RG 119

[Close]

BLAST of Cla97C11G224800 vs. ExPASy Swiss-Prot
Match: P62320 (Small nuclear ribonucleoprotein Sm D3 OS=Mus musculus OX=10090 GN=Snrpd3 PE=1 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 5.9e-34
Identity = 68/122 (55.74%), Postives = 91/122 (74.59%), Query Frame = 0


Query: 4   SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHV 63
           S+G+P+K+LHEA GH+V+ E  +GE+YRG +IE EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2   SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61

Query: 64  FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPG 123
           +IRGSK+RF+++PDMLKNAPM K +    K K    G GRG+A  ++A+  A GRG   G
Sbjct: 62  YIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGSGAGRGKAAILKAQVAARGRGRGMG 119

Query: 124 RG 126
           RG
Sbjct: 122 RG 119

[Close]

BLAST of Cla97C11G224800 vs. ExPASy Swiss-Prot
Match: P62323 (Small nuclear ribonucleoprotein Sm D3 OS=Xenopus laevis OX=8355 GN=snrpd3 PE=2 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 5.9e-34
Identity = 68/122 (55.74%), Postives = 91/122 (74.59%), Query Frame = 0


Query: 4   SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHV 63
           S+G+P+K+LHEA GH+V+ E  +GE+YRG +IE EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2   SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61

Query: 64  FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPG 123
           +IRGSK+RF+++PDMLKNAPM K +    K K    G GRG+A  ++A+  A GRG   G
Sbjct: 62  YIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGSGAGRGKAAILKAQVAARGRGRGMG 119

Query: 124 RG 126
           RG
Sbjct: 122 RG 119

[Close]

BLAST of Cla97C11G224800 vs. ExPASy TrEMBL
Match: A0A5D3D8Q1 (Small nuclear ribonucleoprotein Sm D3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00680 PE=3 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.3e-63
Identity = 129/131 (98.47%), Postives = 129/131 (98.47%), Query Frame = 0


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 44  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 103

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS
Sbjct: 104 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 163

Query: 121 APGRGAAPSAR 132
           APGRGA PS R
Sbjct: 164 APGRGAPPSGR 174

[Close]

BLAST of Cla97C11G224800 vs. ExPASy TrEMBL
Match: A0A1S3BVV0 (Small nuclear ribonucleoprotein Sm D3 OS=Cucumis melo OX=3656 GN=LOC103493808 PE=3 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.3e-63
Identity = 129/131 (98.47%), Postives = 129/131 (98.47%), Query Frame = 0


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120

Query: 121 APGRGAAPSAR 132
           APGRGA PS R
Sbjct: 121 APGRGAPPSGR 131

[Close]

BLAST of Cla97C11G224800 vs. ExPASy TrEMBL
Match: A0A6J1DDX8 (Small nuclear ribonucleoprotein Sm D3 OS=Momordica charantia OX=3673 GN=LOC111019638 PE=3 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 3.7e-63
Identity = 129/131 (98.47%), Postives = 129/131 (98.47%), Query Frame = 0


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120

Query: 121 APGRGAAPSAR 132
           A GRGA PSAR
Sbjct: 121 ATGRGAMPSAR 131

[Close]

BLAST of Cla97C11G224800 vs. ExPASy TrEMBL
Match: A0A0A0L5W4 (Small nuclear ribonucleoprotein Sm D3 OS=Cucumis sativus OX=3659 GN=Csa_4G658560 PE=3 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 6.3e-63
Identity = 128/131 (97.71%), Postives = 128/131 (97.71%), Query Frame = 0


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
           EHVFIRGSKV FMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS
Sbjct: 61  EHVFIRGSKVSFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120

Query: 121 APGRGAAPSAR 132
           APGRGA PS R
Sbjct: 121 APGRGAPPSGR 131

[Close]

BLAST of Cla97C11G224800 vs. ExPASy TrEMBL
Match: A0A6J1IBE9 (Small nuclear ribonucleoprotein Sm D3 OS=Cucurbita maxima OX=3661 GN=LOC111473626 PE=3 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 8.3e-63
Identity = 128/131 (97.71%), Postives = 128/131 (97.71%), Query Frame = 0


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRG 
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120

Query: 121 APGRGAAPSAR 132
           A GRGA PSAR
Sbjct: 121 ATGRGAVPSAR 131

[Close]

BLAST of Cla97C11G224800 vs. TAIR 10
Match: AT1G20580.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 209.1 bits (531), Expect = 2.4e-54
Identity = 111/132 (84.09%), Postives = 119/132 (90.15%), Query Frame = 0


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEA+GH+V+VELKSGELYRGSMIECEDNWNCQLE+ITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAK-AQAAGRG 120
           EHVFIRGSKVRFMVIPD+LK+APMFKRLDARIKGK +SLGVGRGR  AMR K A   GRG
Sbjct: 61  EHVFIRGSKVRFMVIPDILKHAPMFKRLDARIKGKSSSLGVGRGRG-AMRGKPAAGPGRG 120

Query: 121 SAPGRGAAPSAR 132
           +  GRGA P  R
Sbjct: 121 TG-GRGAVPPVR 130

[Close]

BLAST of Cla97C11G224800 vs. TAIR 10
Match: AT1G76300.1 (snRNP core protein SMD3 )

HSP 1 Score: 207.6 bits (527), Expect = 6.9e-54
Identity = 108/131 (82.44%), Postives = 114/131 (87.02%), Query Frame = 0


Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHE++GH+VSVE+KSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
           EHVFIRGS VRF+VIPDMLKNAPMFK  D R KGK ASLGVGRGR  AMRAK    GRG+
Sbjct: 61  EHVFIRGSLVRFLVIPDMLKNAPMFK--DVRGKGKSASLGVGRGRGAAMRAK--GTGRGT 120

Query: 121 APGRGAAPSAR 132
             GRGA P  R
Sbjct: 121 GGGRGAVPPVR 127

[Close]

BLAST of Cla97C11G224800 vs. TAIR 10
Match: AT5G27720.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 63.5 bits (153), Expect = 1.6e-10
Identity = 39/119 (32.77%), Postives = 67/119 (56.30%), Query Frame = 0


Query: 7   IPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDG-KVSQLEHVFI 66
           +P+ LL  A GH + VELK+GE Y G ++ C+   N  L  +  T+KDG +  ++   +I
Sbjct: 2   LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61

Query: 67  RGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPGR 125
           RG+ ++++ +PD + +    ++   R   K   +G GRGR V     A+  GRG++ G+
Sbjct: 62  RGNTIKYLRVPDEVIDKVQEEK--TRTDRKPPGVGRGRGRGVD-DGGARGRGRGTSMGK 117

[Close]

BLAST of Cla97C11G224800 vs. TAIR 10
Match: AT3G07590.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 55.1 bits (131), Expect = 5.7e-08
Identity = 35/121 (28.93%), Postives = 59/121 (48.76%), Query Frame = 0


Query: 9   VKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
           V+ L +     VS+ELK+G +  G++   + + N  L+ +  + K      L+H+ +RG+
Sbjct: 4   VRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSLRGN 63

Query: 69  KVRFMVIPDMLKNAPMFKRLDARIKGK----GASLGVGRGRAVAMRAKAQAAGRGSAPGR 126
            +R+ ++PD L    +      R+K K    G ++G GRGR           GRG   GR
Sbjct: 64  NIRYYILPDSLNLETLLVEDTPRVKPKKPVAGKAVGRGRGR-----------GRGRGRGR 113

[Close]

BLAST of Cla97C11G224800 vs. TAIR 10
Match: AT3G07590.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 55.1 bits (131), Expect = 5.7e-08
Identity = 35/121 (28.93%), Postives = 59/121 (48.76%), Query Frame = 0


Query: 9   VKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
           V+ L +     VS+ELK+G +  G++   + + N  L+ +  + K      L+H+ +RG+
Sbjct: 4   VRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSLRGN 63

Query: 69  KVRFMVIPDMLKNAPMFKRLDARIKGK----GASLGVGRGRAVAMRAKAQAAGRGSAPGR 126
            +R+ ++PD L    +      R+K K    G ++G GRGR           GRG   GR
Sbjct: 64  NIRYYILPDSLNLETLLVEDTPRVKPKKPVAGKAVGRGRGR-----------GRGRGRGR 113

The following BLAST results are available for this feature:

BLAST of Cla97C11G224800 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896140.1	6.9e-64	99.24	small nuclear ribonucleoprotein SmD3a-like [Benincasa hispida]	[more]
KAA0064637.1	2.6e-63	98.47	small nuclear ribonucleoprotein SmD3a-like [Cucumis melo var. makuwa] >TYK19955....	[more]
XP_008452950.1	2.6e-63	98.47	PREDICTED: small nuclear ribonucleoprotein SmD3a-like [Cucumis melo]	[more]
XP_022151728.1	7.7e-63	98.47	small nuclear ribonucleoprotein SmD3b-like [Momordica charantia] >XP_022151729.1...	[more]
XP_004145538.1	1.3e-62	97.71	small nuclear ribonucleoprotein SmD3a [Cucumis sativus] >KGN55496.1 hypothetical...	[more]

BLAST of Cla97C11G224800 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LM92	3.4e-53	84.09	Small nuclear ribonucleoprotein SmD3b OS=Arabidopsis thaliana OX=3702 GN=SMD3B P...	[more]
Q9S7E6	9.8e-53	82.44	Small nuclear ribonucleoprotein SmD3a OS=Arabidopsis thaliana OX=3702 GN=SMD3A P...	[more]
P62318	5.9e-34	55.74	Small nuclear ribonucleoprotein Sm D3 OS=Homo sapiens OX=9606 GN=SNRPD3 PE=1 SV=...	[more]
P62320	5.9e-34	55.74	Small nuclear ribonucleoprotein Sm D3 OS=Mus musculus OX=10090 GN=Snrpd3 PE=1 SV...	[more]
P62323	5.9e-34	55.74	Small nuclear ribonucleoprotein Sm D3 OS=Xenopus laevis OX=8355 GN=snrpd3 PE=2 S...	[more]

BLAST of Cla97C11G224800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D8Q1	1.3e-63	98.47	Small nuclear ribonucleoprotein Sm D3 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3BVV0	1.3e-63	98.47	Small nuclear ribonucleoprotein Sm D3 OS=Cucumis melo OX=3656 GN=LOC103493808 PE...	[more]
A0A6J1DDX8	3.7e-63	98.47	Small nuclear ribonucleoprotein Sm D3 OS=Momordica charantia OX=3673 GN=LOC11101...	[more]
A0A0A0L5W4	6.3e-63	97.71	Small nuclear ribonucleoprotein Sm D3 OS=Cucumis sativus OX=3659 GN=Csa_4G658560...	[more]
A0A6J1IBE9	8.3e-63	97.71	Small nuclear ribonucleoprotein Sm D3 OS=Cucurbita maxima OX=3661 GN=LOC11147362...	[more]

BLAST of Cla97C11G224800 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20580.1	2.4e-54	84.09	Small nuclear ribonucleoprotein family protein	[more]
AT1G76300.1	6.9e-54	82.44	snRNP core protein SMD3	[more]
AT5G27720.1	1.6e-10	32.77	Small nuclear ribonucleoprotein family protein	[more]
AT3G07590.1	5.7e-08	28.93	Small nuclear ribonucleoprotein family protein	[more]
AT3G07590.2	5.7e-08	28.93	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 10..75 e-value: 5.2E-17 score: 72.5
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 11..74 e-value: 4.9E-15 score: 55.0
None	No IPR available	GENE3D	2.30.30.100		coord: 3..86 e-value: 2.3E-32 score: 112.3
None	No IPR available	PANTHER	PTHR23338:SF54	SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3	coord: 1..128
IPR027141	Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3	PANTHER	PTHR23338	SMALL NUCLEAR RIBONUCLEOPROTEIN SM	coord: 1..128
IPR034099	Small nuclear ribonucleoprotein Sm D3	CDD	cd01721	Sm_D3	coord: 8..77 e-value: 8.84293E-48 score: 146.897
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 8..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C11G224800.2	Cla97C11G224800.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
biological_process	GO:0000387	spliceosomal snRNP assembly
cellular_component	GO:0071013	catalytic step 2 spliceosome
cellular_component	GO:0000243	commitment complex
cellular_component	GO:0005829	cytosol
cellular_component	GO:0034715	pICln-Sm protein complex
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0034719	SMN-Sm protein complex
cellular_component	GO:0097526	spliceosomal tri-snRNP complex
cellular_component	GO:0005689	U12-type spliceosomal complex
cellular_component	GO:0005685	U1 snRNP
cellular_component	GO:0005686	U2 snRNP
cellular_component	GO:0005687	U4 snRNP
cellular_component	GO:0005682	U5 snRNP
cellular_component	GO:0005681	spliceosomal complex
molecular_function	GO:0003723	RNA binding