Cla97C11G224030 (gene) Watermelon (97103) v2.5

Overview
NameCla97C11G224030
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionHistidine-rich glycoprotein-like isoform X2
LocationCla97Chr11: 29788145 .. 29788705 (+)
RNA-Seq ExpressionCla97C11G224030
SyntenyCla97C11G224030
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTCTACACCACACAACTTTTCCCTTCATCTTTTGGCCAAACACCTTGAAATAGCCAATCCCTCCTCTCCCCTAACCTTTAAAACACAACAAACCCTTCTCCCCATTCTCACCAACCCCTTGTGTAAATTTCAATTTCCCATTGGCAAATCAACACACATCACACACGGAGCCCAAAAAACGGAGAAAAAAGAGGCAACGACGAAGACCATGACGACGATCGTGAACTCAGCTAAAGTACCAACAACATCGAGAAAGGTCATGATCGTCTCCATGACAACGATCGTCGTTGCTACCGTTAGCATTGTCGTGGTCTTGCTTCCAATGGGTGCAGAAGCGCTTATCCCAACCGTCGGTCCAATCGCTCAATGTATCCAAGGGTGCACAAAGTCGCTGTCAAGTTTAACTCCTGGTTATTGCTCGAGTATTTGTGGAGCTGAGTATAGGCCTCTAACAACAAGACATAGAGAGACTTCTGCCCCTCATCATCATCATCATCATGATCATAACCATGTTGATAAGCATCATATTATTGCTGATGTTATCATACCAAGTTAG

mRNA sequence

ATGTTGTCTACACCACACAACTTTTCCCTTCATCTTTTGGCCAAACACCTTGAAATAGCCAATCCCTCCTCTCCCCTAACCTTTAAAACACAACAAACCCTTCTCCCCATTCTCACCAACCCCTTGTGTAAATTTCAATTTCCCATTGGCAAATCAACACACATCACACACGGAGCCCAAAAAACGGAGAAAAAAGAGGCAACGACGAAGACCATGACGACGATCGTGAACTCAGCTAAAGTACCAACAACATCGAGAAAGGTCATGATCGTCTCCATGACAACGATCGTCGTTGCTACCGTTAGCATTGTCGTGGTCTTGCTTCCAATGGGTGCAGAAGCGCTTATCCCAACCGTCGGTCCAATCGCTCAATGTATCCAAGGGTGCACAAAGTCGCTGTCAAGTTTAACTCCTGGTTATTGCTCGAGTATTTGTGGAGCTGAGTATAGGCCTCTAACAACAAGACATAGAGAGACTTCTGCCCCTCATCATCATCATCATCATGATCATAACCATGTTGATAAGCATCATATTATTGCTGATGTTATCATACCAAGTTAG

Coding sequence (CDS)

ATGTTGTCTACACCACACAACTTTTCCCTTCATCTTTTGGCCAAACACCTTGAAATAGCCAATCCCTCCTCTCCCCTAACCTTTAAAACACAACAAACCCTTCTCCCCATTCTCACCAACCCCTTGTGTAAATTTCAATTTCCCATTGGCAAATCAACACACATCACACACGGAGCCCAAAAAACGGAGAAAAAAGAGGCAACGACGAAGACCATGACGACGATCGTGAACTCAGCTAAAGTACCAACAACATCGAGAAAGGTCATGATCGTCTCCATGACAACGATCGTCGTTGCTACCGTTAGCATTGTCGTGGTCTTGCTTCCAATGGGTGCAGAAGCGCTTATCCCAACCGTCGGTCCAATCGCTCAATGTATCCAAGGGTGCACAAAGTCGCTGTCAAGTTTAACTCCTGGTTATTGCTCGAGTATTTGTGGAGCTGAGTATAGGCCTCTAACAACAAGACATAGAGAGACTTCTGCCCCTCATCATCATCATCATCATGATCATAACCATGTTGATAAGCATCATATTATTGCTGATGTTATCATACCAAGTTAG

Protein sequence

MLSTPHNFSLHLLAKHLEIANPSSPLTFKTQQTLLPILTNPLCKFQFPIGKSTHITHGAQKTEKKEATTKTMTTIVNSAKVPTTSRKVMIVSMTTIVVATVSIVVVLLPMGAEALIPTVGPIAQCIQGCTKSLSSLTPGYCSSICGAEYRPLTTRHRETSAPHHHHHHDHNHVDKHHIIADVIIPS
Homology
BLAST of Cla97C11G224030 vs. NCBI nr
Match: KAE8649837.1 (hypothetical protein Csa_012364 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 4.2e-18
Identity = 63/116 (54.31%), Postives = 78/116 (67.24%), Query Frame = 0

Query: 75  IVNSAKVPTTSRKVMIVSMTTIVVATVSIVVVLLPMGAEALIPTVGPIAQCIQGCTKSLS 134
           ++N  K+  TSR V IV + T+++ATVSIV+VL PMGA+A IP VGPIAQCIQGCTKSLS
Sbjct: 1   MINLGKMSRTSRMVTIVPIMTMIIATVSIVIVLFPMGADA-IPLVGPIAQCIQGCTKSLS 60

Query: 135 SLTPGYCSSICGAEYRPLTTRHRETS---------APHH----HHHHDHNHVDKHH 178
           +LTPGYC ++CGAEY PL    + T+           HH    HHH  H  V+ HH
Sbjct: 61  TLTPGYCMNLCGAEYSPLANTVKNTALANTVQNIHQEHHVQVEHHHEHHVQVEHHH 115

BLAST of Cla97C11G224030 vs. NCBI nr
Match: KAA0064320.1 (histidine-rich glycoprotein-like isoform X2 [Cucumis melo var. makuwa] >TYK20266.1 histidine-rich glycoprotein-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 101.3 bits (251), Expect = 9.3e-18
Identity = 56/86 (65.12%), Postives = 66/86 (76.74%), Query Frame = 0

Query: 96  IVVATVSIVVVLLPMGAEALIPTVGPIAQCIQGCTKSLSSLTPGYCSSICGAEYRPLTTR 155
           ++VAT+SIV+V LPMGAEA IP VGPIAQCIQGCT+SLS+LTPGYC +ICGAEY PLT  
Sbjct: 1   MIVATLSIVIVSLPMGAEA-IPLVGPIAQCIQGCTRSLSTLTPGYCMNICGAEYHPLTNP 60

Query: 156 HRETSAPHH----HHHHDHNHVDKHH 178
            ++T   HH    HHH  H H + HH
Sbjct: 61  IQDTHQKHHVQVEHHHEHHVHFEHHH 85

BLAST of Cla97C11G224030 vs. NCBI nr
Match: KAG6591952.1 (hypothetical protein SDJN03_14298, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024824.1 hypothetical protein SDJN02_13643, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-10
Identity = 55/110 (50.00%), Postives = 71/110 (64.55%), Query Frame = 0

Query: 76  VNSAKVPTTSRKVMIVSMTTIVVATVSIVVVLLPMGAEALIPTVGPIAQCIQGCTKSLSS 135
           +NS K  +T R+V+IV   T++VA   I+V LLPM AEA +P  G ++QCIQGCTKSL+ 
Sbjct: 1   MNSTK--STPRRVLIV--VTMMVAL--IIVGLLPMAAEATVPAGGAVSQCIQGCTKSLAG 60

Query: 136 LTPGYCSSICGAEYRPLTTRHRETSAPHHHHHHDHNH----VDKHHIIAD 182
           LT GYC ++C AE+ PL       SA  HHH HDH+H    VD H  + D
Sbjct: 61  LTSGYCLTLCSAEFHPL-------SAHPHHHEHDHSHAHVRVDAHAHVDD 97

BLAST of Cla97C11G224030 vs. NCBI nr
Match: KAG6607883.1 (hypothetical protein SDJN03_01225, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 65.1 bits (157), Expect = 7.4e-07
Identity = 38/81 (46.91%), Postives = 47/81 (58.02%), Query Frame = 0

Query: 92  SMTTIVVATVSIVVVLLPMGAEALIPTVGPIAQCIQGCTKSLSSLTPGYCSSICGAEYRP 151
           +M  I+ A  ++ +VLLPM AEA IPTVG I +CI+ C  SL SL P YCS +C AE+ P
Sbjct: 8   TMLIIIAAIAAVTIVLLPMPAEAHIPTVGVIPKCIKSCLSSLQSLGPSYCSDLCKAEFPP 67

Query: 152 LTTRHRETSAPHHHHHHDHNH 173
                     P H H H H H
Sbjct: 68  ----------PRHQHQHQHRH 78

BLAST of Cla97C11G224030 vs. ExPASy TrEMBL
Match: A0A5A7VAR8 (Histidine-rich glycoprotein-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G004060 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 4.5e-18
Identity = 56/86 (65.12%), Postives = 66/86 (76.74%), Query Frame = 0

Query: 96  IVVATVSIVVVLLPMGAEALIPTVGPIAQCIQGCTKSLSSLTPGYCSSICGAEYRPLTTR 155
           ++VAT+SIV+V LPMGAEA IP VGPIAQCIQGCT+SLS+LTPGYC +ICGAEY PLT  
Sbjct: 1   MIVATLSIVIVSLPMGAEA-IPLVGPIAQCIQGCTRSLSTLTPGYCMNICGAEYHPLTNP 60

Query: 156 HRETSAPHH----HHHHDHNHVDKHH 178
            ++T   HH    HHH  H H + HH
Sbjct: 61  IQDTHQKHHVQVEHHHEHHVHFEHHH 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8649837.14.2e-1854.31hypothetical protein Csa_012364 [Cucumis sativus][more]
KAA0064320.19.3e-1865.12histidine-rich glycoprotein-like isoform X2 [Cucumis melo var. makuwa] >TYK20266... [more]
KAG6591952.11.1e-1050.00hypothetical protein SDJN03_14298, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6607883.17.4e-0746.91hypothetical protein SDJN03_01225, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VAR84.5e-1865.12Histidine-rich glycoprotein-like isoform X2 OS=Cucumis melo var. makuwa OX=11946... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C11G224030.1Cla97C11G224030.1mRNA