Cla97C11G220340 (gene) Watermelon (97103) v2.5

Overview
NameCla97C11G220340
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Descriptioncircumsporozoite protein-like
LocationCla97Chr11: 26382102 .. 26382581 (-)
RNA-Seq ExpressionCla97C11G220340
SyntenyCla97C11G220340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAGATCCAGAGACGGCGATTCTGTTCACGACAGCGCCATTGCCAGGTGTTGAGGTCGGCGACGGAGCCTGTGCTGGAGGAGTTGAGATCGAAGGAGTTGGACCTGAAGTGATCACTGGTGCCTCCGAAGGAGCAGTAGGTGGAGCCGGTGGAGAAGTAGCCGGCGCCAAAACTGGTGATGAAGTTCCGGTGGAAGGAGAGGGAGCCGCGCCTGATGGAGCAAGGGATGAAGACGGAGTCGAAGCTGGAGGAGTCGCCACTGTAGGCGGAGGAGTCGCCACTGTAGGCGGAGGAGCCGATTTCGGAGAGGAGGATGGCGGCGACTTGGTTGGAGAAGAGGCCGGTGCGGCGCCCGGAGCTTGGCCAAGAGAGCTGGCGATCAAAGCTAAGAGGACGAAGAAGACGACGGCGGAGGAGGAAGCCATGGTGGTGAAGAATGCGAAGAGCAGAGCGAGGAAAGATGGAAGGAAAGTTTGA

mRNA sequence

ATGATAGATCCAGAGACGGCGATTCTGTTCACGACAGCGCCATTGCCAGGTGTTGAGGTCGGCGACGGAGCCTGTGCTGGAGGAGTTGAGATCGAAGGAGTTGGACCTGAAGTGATCACTGGTGCCTCCGAAGGAGCAGTAGGTGGAGCCGGTGGAGAAGTAGCCGGCGCCAAAACTGGTGATGAAGTTCCGGTGGAAGGAGAGGGAGCCGCGCCTGATGGAGCAAGGGATGAAGACGGAGTCGAAGCTGGAGGAGTCGCCACTGTAGGCGGAGGAGTCGCCACTGTAGGCGGAGGAGCCGATTTCGGAGAGGAGGATGGCGGCGACTTGGTTGGAGAAGAGGCCGGTGCGGCGCCCGGAGCTTGGCCAAGAGAGCTGGCGATCAAAGCTAAGAGGACGAAGAAGACGACGGCGGAGGAGGAAGCCATGGTGGTGAAGAATGCGAAGAGCAGAGCGAGGAAAGATGGAAGGAAAGTTTGA

Coding sequence (CDS)

ATGATAGATCCAGAGACGGCGATTCTGTTCACGACAGCGCCATTGCCAGGTGTTGAGGTCGGCGACGGAGCCTGTGCTGGAGGAGTTGAGATCGAAGGAGTTGGACCTGAAGTGATCACTGGTGCCTCCGAAGGAGCAGTAGGTGGAGCCGGTGGAGAAGTAGCCGGCGCCAAAACTGGTGATGAAGTTCCGGTGGAAGGAGAGGGAGCCGCGCCTGATGGAGCAAGGGATGAAGACGGAGTCGAAGCTGGAGGAGTCGCCACTGTAGGCGGAGGAGTCGCCACTGTAGGCGGAGGAGCCGATTTCGGAGAGGAGGATGGCGGCGACTTGGTTGGAGAAGAGGCCGGTGCGGCGCCCGGAGCTTGGCCAAGAGAGCTGGCGATCAAAGCTAAGAGGACGAAGAAGACGACGGCGGAGGAGGAAGCCATGGTGGTGAAGAATGCGAAGAGCAGAGCGAGGAAAGATGGAAGGAAAGTTTGA

Protein sequence

MIDPETAILFTTAPLPGVEVGDGACAGGVEIEGVGPEVITGASEGAVGGAGGEVAGAKTGDEVPVEGEGAAPDGARDEDGVEAGGVATVGGGVATVGGGADFGEEDGGDLVGEEAGAAPGAWPRELAIKAKRTKKTTAEEEAMVVKNAKSRARKDGRKV
Homology
BLAST of Cla97C11G220340 vs. NCBI nr
Match: KGN60236.1 (hypothetical protein Csa_001434 [Cucumis sativus])

HSP 1 Score: 177.9 bits (450), Expect = 6.7e-41
Identity = 112/156 (71.79%), Postives = 118/156 (75.64%), Query Frame = 0

Query: 1   MIDPETAILFTTAPLPGVEVGDGACAGGVEIEGVGPEVITGASEGAVGGAGGEVAGAKTG 60
           MIDPETAILFT APLPGV+VGDGA AGG E+E  G  VI G SEGAVGGAGGE AGA  G
Sbjct: 1   MIDPETAILFTKAPLPGVDVGDGASAGGFEMEEDGTGVIIGESEGAVGGAGGEEAGAIAG 60

Query: 61  DEVPVEGEGAAPDGARDEDGVEAGGVATVGGGVATVGGGADFGEEDGGDLVGEEAGAAPG 120
            EV V+G GA PDGAR ED           GGVATVGGGAD GEE G DLVGEEAGAAPG
Sbjct: 61  GEVAVKGAGATPDGARGED----------DGGVATVGGGADLGEEAGDDLVGEEAGAAPG 120

Query: 121 AWPRELAIKAKRTKKTTAEEEAMVV-KNAKSRARKD 156
           AWPRE AIKAKRT KT AEEEAMVV KN K R +++
Sbjct: 121 AWPREAAIKAKRTTKTKAEEEAMVVKKNGKRREKRE 146

BLAST of Cla97C11G220340 vs. NCBI nr
Match: XP_022136125.1 (circumsporozoite protein-like [Momordica charantia])

HSP 1 Score: 156.0 bits (393), Expect = 2.7e-34
Identity = 102/158 (64.56%), Postives = 111/158 (70.25%), Query Frame = 0

Query: 1   MIDPETAILFTTAPLPGVEVGDGACAGGVEIEGVGPEVITGASEGAVGGAGGEVAGAKTG 60
           MIDP  A LF  APLPGVE GDGAC GG  IE  G  V  G SEGAVGGAGGE AGA+ G
Sbjct: 1   MIDPVPATLFKAAPLPGVEAGDGACDGGFAIEVSGVGVDAGESEGAVGGAGGEEAGAEAG 60

Query: 61  DEVPVEGEGAAPDGARDEDGVEAGGVATVGGGVATVGGGADFGEEDGGDLVGEEAGAAPG 120
            EVPVEG G  P GA DEDGV+AGGVAT  GG A       FG++ GG LVGEEAGAAPG
Sbjct: 61  GEVPVEGAGETPAGAGDEDGVDAGGVATAVGGAA-------FGDDAGGGLVGEEAGAAPG 120

Query: 121 AWPRELAIKAKRTKKTTAEEEAMVVKNAKSRARKDGRK 159
           AWP+E A KA  TK T A EEAM VKNA+ R  ++GR+
Sbjct: 121 AWPKEPATKANSTKNTKA-EEAMAVKNAQ-RREENGRR 149

BLAST of Cla97C11G220340 vs. NCBI nr
Match: XP_023520820.1 (uncharacterized protein LOC111784314 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 62.0 bits (149), Expect = 5.3e-06
Identity = 44/88 (50.00%), Postives = 49/88 (55.68%), Query Frame = 0

Query: 1  MIDPETAILFTTAPLPGVEVGDGACAGGVEIEGVGPEVITGASEGAVGGAGGEVAGAKTG 60
          MID ET+ILFT  PLPGVE GD                      GAV  A GE+ GA   
Sbjct: 1  MIDLETSILFTAPPLPGVEAGD----------------------GAVVEARGEIVGAIAS 60

Query: 61 DEVPVEGEGAAPDGARDEDGVEAGGVAT 89
           EVP++ EG  P GARD+DGVEAG VAT
Sbjct: 61 GEVPIDEEGGTPLGARDKDGVEAGRVAT 66

BLAST of Cla97C11G220340 vs. ExPASy TrEMBL
Match: A0A0A0LJM1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889920 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 3.2e-41
Identity = 112/156 (71.79%), Postives = 118/156 (75.64%), Query Frame = 0

Query: 1   MIDPETAILFTTAPLPGVEVGDGACAGGVEIEGVGPEVITGASEGAVGGAGGEVAGAKTG 60
           MIDPETAILFT APLPGV+VGDGA AGG E+E  G  VI G SEGAVGGAGGE AGA  G
Sbjct: 1   MIDPETAILFTKAPLPGVDVGDGASAGGFEMEEDGTGVIIGESEGAVGGAGGEEAGAIAG 60

Query: 61  DEVPVEGEGAAPDGARDEDGVEAGGVATVGGGVATVGGGADFGEEDGGDLVGEEAGAAPG 120
            EV V+G GA PDGAR ED           GGVATVGGGAD GEE G DLVGEEAGAAPG
Sbjct: 61  GEVAVKGAGATPDGARGED----------DGGVATVGGGADLGEEAGDDLVGEEAGAAPG 120

Query: 121 AWPRELAIKAKRTKKTTAEEEAMVV-KNAKSRARKD 156
           AWPRE AIKAKRT KT AEEEAMVV KN K R +++
Sbjct: 121 AWPREAAIKAKRTTKTKAEEEAMVVKKNGKRREKRE 146

BLAST of Cla97C11G220340 vs. ExPASy TrEMBL
Match: A0A6J1C301 (circumsporozoite protein-like OS=Momordica charantia OX=3673 GN=LOC111007891 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 1.3e-34
Identity = 102/158 (64.56%), Postives = 111/158 (70.25%), Query Frame = 0

Query: 1   MIDPETAILFTTAPLPGVEVGDGACAGGVEIEGVGPEVITGASEGAVGGAGGEVAGAKTG 60
           MIDP  A LF  APLPGVE GDGAC GG  IE  G  V  G SEGAVGGAGGE AGA+ G
Sbjct: 1   MIDPVPATLFKAAPLPGVEAGDGACDGGFAIEVSGVGVDAGESEGAVGGAGGEEAGAEAG 60

Query: 61  DEVPVEGEGAAPDGARDEDGVEAGGVATVGGGVATVGGGADFGEEDGGDLVGEEAGAAPG 120
            EVPVEG G  P GA DEDGV+AGGVAT  GG A       FG++ GG LVGEEAGAAPG
Sbjct: 61  GEVPVEGAGETPAGAGDEDGVDAGGVATAVGGAA-------FGDDAGGGLVGEEAGAAPG 120

Query: 121 AWPRELAIKAKRTKKTTAEEEAMVVKNAKSRARKDGRK 159
           AWP+E A KA  TK T A EEAM VKNA+ R  ++GR+
Sbjct: 121 AWPKEPATKANSTKNTKA-EEAMAVKNAQ-RREENGRR 149

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN60236.16.7e-4171.79hypothetical protein Csa_001434 [Cucumis sativus][more]
XP_022136125.12.7e-3464.56circumsporozoite protein-like [Momordica charantia][more]
XP_023520820.15.3e-0650.00uncharacterized protein LOC111784314 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LJM13.2e-4171.79Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889920 PE=4 SV=1[more]
A0A6J1C3011.3e-3464.56circumsporozoite protein-like OS=Momordica charantia OX=3673 GN=LOC111007891 PE=... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 132..150
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..118
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 132..159

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C11G220340.1Cla97C11G220340.1mRNA