Cla97C11G218138 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C11G218138
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	Cla97Chr11: 23994680 .. 23996299 (-)
RNA-Seq Expression	Cla97C11G218138
Synteny	Cla97C11G218138

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGCCAAGTTTGAATTAGACAAATTCGATGAAAAAGGTGATTTCGGCTTTTGGAAGAAGAAGATGAAGGCTCTTCTGGTTCAACAAAAGGTTTCGAAAGCTCTAGATGCTCCAAGTAAGTTGCCCACTTCTATGAGTGATGCCGAAAAGGCTGAGATGGCTAAAATTGCATATAGTACTGTCATTCTATATTTGGCGGATAATGTTTTGAGACGTGTTAGTGCTATTGATAATGTTTCTGATTTATGGACTAAGCTTGATGAATTGTTCTTATCCAAGTCATTAGCGAACAAGATCTACTTAAAGGAGAGGTTATTTGATTTTAAAATGGATTCATCTAAGGGTCTAGAAGAGAATATTGATGATTTTTGTAGGATTTGTCTAGATCTTGTTAATGCTAGTGAGCAATTAGATGGAGAAAACCAAGTTGTCATCCTTCTTAATTCATTACCTGATAAATATAAGGAAGTGAAATCAGATATTAGATATGAATGCGATAAGTTAACTTTTGATATTGTCTTTGATGCACTTCAACGAAGGAGTTAGATATTAAAACAGAGAAGAAAGAAACAAAAGCATTGTTTGTTAAAAATAAGCATAATAAGCCAAATAAGCAGAATTCTTACAACAAAATCAATTAGAAATCGAATTAGAAAGATAAAATTACTTGTAACTATTGTCGCAAGGAAGGACACACTAAATTTGATTGCCTCATTTTAAGAAGAAAAGGAATATTACTTCTTAGAAAATAATATAAGGTTTTGGCTAATGTGTTAGAAGGCTATGAATCTGCTGAAGTACTTGTTATTACTGAATCTAATGAAACTGATGAATGGATATTAGATTCAGGATGTACTTATTAAACATTTTTTCCCTGAAATGAATGAATTTGACGGTGGAAAAGTTATGATGGGCAATAGTCAACAATGTAACATTAAAGGCATTGGGTCTATTAAGCTTGAAATGGATGATGGTAAAATTAAAACATTATCATCAGTTAGATATGTGCTTGGACTTAAAAAAATTGATTTCCTTAAGCATTATGGATAAAGCTGGTTATTGTTATAAATCAGAAAATGGAACCTAAAGGTGCTTCTGTCAAGCTTAAAGCAGTTTTGAAATATGGCCTGTATGTTCTGTGTGGAAAAACTATTGTTGGAGAGTCTTATGTTACATCTGATATTGTTGATGAGCACGCCAAATTATGACATGCTAGGCTAGCTCACATTAGTCCAAAGGGACTTGGTTGCTTGTATAAACAAGGATTGGGATCTCTGACATCTGCAACCTAACCTTTCGATTGCAGCACTACAATCAACCACCTACCAGTCAGAAGTTGAAGAAGGATATACACATCGTCTGCAGTACATCAGCAACAAGGAAATGTCAACATTCCAAGTACAACGCAGACCCTATAAAAACACCAAGACAAAGGTAAAAAGAATGTTGTTGAAATCTTTGGACTTTGGCCATTTGAAGCAGACCGTTTCCAAGGAGACAACTAGAGATAAAGAACTCGAGAGAGTAACCTTCTCGTCGACCAACCATTCCACCACCACACGTAGTGAAACACACGTCCACTGCCGACGGGAACAAAAGATTGTCATCGCCGACTAG

mRNA sequence

ATGTCTGCCAAGTTTGAATTAGACAAATTCGATGAAAAAGGTGATTTCGGCTTTTGGAAGAAGAAGATGAAGGCTCTTCTGGTTCAACAAAAGGTTTCGAAAGCTCTAGATGCTCCAAGTAAGTTGCCCACTTCTATGAGTGATGCCGAAAAGGCTGAGATGGCTAAAATTGCATATAGTACTGTCATTCTATATTTGGCGGATAATGTTTTGAGACGTGTTAGTGCTATTGATAATGTTTCTGATTTATGGACTAAGCTTGATGAATTGTTCTTATCCAAGTCATTAGCGAACAAGATCTACTTAAAGGAGAGGTTATTTGATTTTAAAATGGATTCATCTAAGGGTCTAGAAGAGAATATTGATGATTTTTGTAGGATTTGTCTAGATCTTGTTAATGCTAGTGAGCAATTAGATGGAGAAAACCAAGTTGTCATCCTTCTTAATTCATTACCTGATAAATATAAGGAAGTGAAATCAGATATTAGATATGAATGCGATAAGTTAACTTTTGATATTGTCTTTGATGCACTTCAACGAAGGAAAGGCTATGAATCTGCTGAAGTACTTGTTATTACTGAATCTAATGAAACTGATGAATGGATATTAGATTCAGGATCACTACAATCAACCACCTACCAGTCAGAAGTTGAAGAAGGATATACACATCGTCTGCAGTACATCAGCAACAAGGAAATGTCAACATTCCAAGTACAACGCAGACCCTATAAAAACACCAAGACAAAGGTAAAAAGAATGTTGTTGAAATCTTTGGACTTTGGCCATTTGAAGCAGACCGTTTCCAAGGAGACAACTAGAGATAAAGAACTCGAGAGAGTAACCTTCTCGTCGACCAACCATTCCACCACCACACGTAGTGAAACACACGTCCACTGCCGACGGGAACAAAAGATTGTCATCGCCGACTAG

Coding sequence (CDS)

ATGTCTGCCAAGTTTGAATTAGACAAATTCGATGAAAAAGGTGATTTCGGCTTTTGGAAGAAGAAGATGAAGGCTCTTCTGGTTCAACAAAAGGTTTCGAAAGCTCTAGATGCTCCAAGTAAGTTGCCCACTTCTATGAGTGATGCCGAAAAGGCTGAGATGGCTAAAATTGCATATAGTACTGTCATTCTATATTTGGCGGATAATGTTTTGAGACGTGTTAGTGCTATTGATAATGTTTCTGATTTATGGACTAAGCTTGATGAATTGTTCTTATCCAAGTCATTAGCGAACAAGATCTACTTAAAGGAGAGGTTATTTGATTTTAAAATGGATTCATCTAAGGGTCTAGAAGAGAATATTGATGATTTTTGTAGGATTTGTCTAGATCTTGTTAATGCTAGTGAGCAATTAGATGGAGAAAACCAAGTTGTCATCCTTCTTAATTCATTACCTGATAAATATAAGGAAGTGAAATCAGATATTAGATATGAATGCGATAAGTTAACTTTTGATATTGTCTTTGATGCACTTCAACGAAGGAAAGGCTATGAATCTGCTGAAGTACTTGTTATTACTGAATCTAATGAAACTGATGAATGGATATTAGATTCAGGATCACTACAATCAACCACCTACCAGTCAGAAGTTGAAGAAGGATATACACATCGTCTGCAGTACATCAGCAACAAGGAAATGTCAACATTCCAAGTACAACGCAGACCCTATAAAAACACCAAGACAAAGGTAAAAAGAATGTTGTTGAAATCTTTGGACTTTGGCCATTTGAAGCAGACCGTTTCCAAGGAGACAACTAGAGATAAAGAACTCGAGAGAGTAACCTTCTCGTCGACCAACCATTCCACCACCACACGTAGTGAAACACACGTCCACTGCCGACGGGAACAAAAGATTGTCATCGCCGACTAG

Protein sequence

MSAKFELDKFDEKGDFGFWKKKMKALLVQQKVSKALDAPSKLPTSMSDAEKAEMAKIAYSTVILYLADNVLRRVSAIDNVSDLWTKLDELFLSKSLANKIYLKERLFDFKMDSSKGLEENIDDFCRICLDLVNASEQLDGENQVVILLNSLPDKYKEVKSDIRYECDKLTFDIVFDALQRRKGYESAEVLVITESNETDEWILDSGSLQSTTYQSEVEEGYTHRLQYISNKEMSTFQVQRRPYKNTKTKVKRMLLKSLDFGHLKQTVSKETTRDKELERVTFSSTNHSTTTRSETHVHCRREQKIVIAD

Homology

[Close]

BLAST of Cla97C11G218138 vs. NCBI nr
Match: PON64464.1 (hypothetical protein TorRG33x02_273130 [Trema orientale])

HSP 1 Score: 195.3 bits (495), Expect = 7.9e-46
Identity = 98/178 (55.06%), Postives = 134/178 (75.28%), Query Frame = 0


Query: 2   SAKFELDKFDEKGDFGFWKKKMKALLVQQKVSKALDAPSKLPTSMSDAEKAEMAKIAYST 61
           ++K E++KFD KGDF  WKKKMKA+LVQQK +K L   S LP +M  +EK E+ + AYS 
Sbjct: 3   TSKIEIEKFDGKGDFNMWKKKMKAVLVQQKCAKVLGDASGLPETMKPSEKEELLETAYSL 62

Query: 62  VILYLADNVLRRVSAIDNVSDLWTKLDELFLSKSLANKIYLKERLFDFKMDSSKGLEENI 121
           +IL LADNVLR+V   D  + +W+KLD L+L+K+L+NKIYLKE+LF FKMDS+K LE+N+
Sbjct: 63  LILNLADNVLRQVDEQDTAAKVWSKLDSLYLTKTLSNKIYLKEQLFGFKMDSTKSLEDNL 122

Query: 122 DDFCRICLDLVNASEQLDGENQVVILLNSLPDKYKEVKSDIRYECDKLTFDIVFDALQ 180
           DDF RI + L N  E+++ ENQ +I+LNSLP+ YK++KS I+Y  + L+ D V  AL+
Sbjct: 123 DDFKRITVSLANIDEKINDENQAIIILNSLPESYKDLKSTIKYGRESLSLDDVLRALR 180

[Close]

BLAST of Cla97C11G218138 vs. NCBI nr
Match: TYK25306.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 193.0 bits (489), Expect = 3.9e-45
Identity = 100/205 (48.78%), Postives = 142/205 (69.27%), Query Frame = 0


Query: 2   SAKFELDKFDEKGDFGFWKKKMKALLVQQKVSKALDAPSKLPTSMSDAEKAEMAKIAYST 61
           S +FE+ KF+  GDF  W+KK++A+LVQ KV+K LD   +LP +++++EK +M ++AYST
Sbjct: 3   STRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILD-EERLPDNITESEKRDMDEMAYST 62

Query: 62  VILYLADNVLRRVSAIDNVSDLWTKLDELFLSKSLANKIYLKERLFDFKMDSSKGLEENI 121
           ++LYL+D VLR V       +LW KL+ L+L+KSL NKIY+KE+ F +KMD SK LEEN+
Sbjct: 63  ILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKSLEENL 122

Query: 122 DDFCRICLDLVNASEQLDGENQVVILLNSLPDKYKEVKSDIRYECDKLTFDIVFDALQRR 181
           D+F +I +DL N  E++  ENQ VILLNSLP+ Y+EVK+ I+Y  D LT  IV DAL+ R
Sbjct: 123 DEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTR 182

Query: 182 -----KGYESAEVLVITESNETDEW 202
                K  +  E+L+    +E   W
Sbjct: 183 NLEIKKERKDGELLMARGRSEKKSW 206

[Close]

BLAST of Cla97C11G218138 vs. NCBI nr
Match: KAA0050719.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 193.0 bits (489), Expect = 3.9e-45
Identity = 100/205 (48.78%), Postives = 142/205 (69.27%), Query Frame = 0


Query: 2   SAKFELDKFDEKGDFGFWKKKMKALLVQQKVSKALDAPSKLPTSMSDAEKAEMAKIAYST 61
           S +FE+ KF+  GDF  W+KK++A+LVQ KV+K LD   +LP +++++EK +M ++AYST
Sbjct: 3   STRFEVSKFNGHGDFSLWRKKIRAILVQHKVAKILD-EERLPDNITESEKRDMDEMAYST 62

Query: 62  VILYLADNVLRRVSAIDNVSDLWTKLDELFLSKSLANKIYLKERLFDFKMDSSKGLEENI 121
           ++LYL+D VLR V       +LW KL+ L+L+KSL NKIY+KE+ F +KMD SK LEEN+
Sbjct: 63  ILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLLNKIYIKEKFFGYKMDQSKSLEENL 122

Query: 122 DDFCRICLDLVNASEQLDGENQVVILLNSLPDKYKEVKSDIRYECDKLTFDIVFDALQRR 181
           D+F +I +DL N  E++  ENQ VILLNSLP+ Y+EVK+ I+Y  D LT  IV DAL+ R
Sbjct: 123 DEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTR 182

Query: 182 -----KGYESAEVLVITESNETDEW 202
                K  +  E+L+    +E   W
Sbjct: 183 NLEIKKERKDGELLMARGRSEKKSW 206

[Close]

BLAST of Cla97C11G218138 vs. NCBI nr
Match: TXG64595.1 (hypothetical protein EZV62_011589 [Acer yangbiense])

HSP 1 Score: 192.2 bits (487), Expect = 6.7e-45
Identity = 113/278 (40.65%), Postives = 175/278 (62.95%), Query Frame = 0


Query: 1   MSAKFELDKFDEKGDFGFWKKKMKALLVQQKVSKALDAPSKLPTSMSDAEKAEMAKIAYS 60
           MS KF++DKFD  GDFG W++K+KALL QQK+ KA++ P KLP S++  +K +M ++A  
Sbjct: 384 MSMKFDIDKFDGSGDFGIWRRKVKALLSQQKILKAIEGPEKLPDSLTVEQKDDMLEMALG 443

Query: 61  TVILYLADNVLRRVSAIDNVSDLWTKLDELFLSKSLANKIYLKERLFDFKMDSSKGLEEN 120
           T+IL L+DNVLR ++      D+W KL+ L+L+KSL NKIYLKERLF FKMD+SKGL +N
Sbjct: 444 TIILNLSDNVLREINDEKTACDVWKKLESLYLTKSLTNKIYLKERLFGFKMDASKGLGKN 503

Query: 121 IDDFCRICLDLVNA--SEQLDGENQVVILLNSLPDKYKEVKSDIRYECDKLTFDIVFDAL 180
           +DDF ++ ++L NA   E+L  EN+ +ILLNSLPD +K+VK+ I+Y    L+ +    AL
Sbjct: 504 LDDFKKMTIELANAGEDEKLSDENEAIILLNSLPDSFKDVKAAIKYGRSSLSLEECISAL 563

Query: 181 QRRKGYESAEVLVITESNETDEWILDSGSLQSTTYQSE--VEEGYTHRLQ-YISNKEMST 240
                 +S E+ +  E  +  E +    +++   ++ E        H++Q + +N   +T
Sbjct: 564 ------KSKELELKIEKKDNGENLFVRDTVEENPFEDERAAHSDGIHQVQKHNTNLSKTT 623

Query: 241 FQVQRRPY---KNTKTKVKRMLLKSLDFGHLKQTVSKE 271
            +V  + +    NT +K+K  +  S   GH+ +T + E
Sbjct: 624 SEVVAKRFVLDANTISKLKAEVTSSCGGGHMHKTSTTE 655

[Close]

BLAST of Cla97C11G218138 vs. NCBI nr
Match: KAA0050070.1 (putative polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 191.8 bits (486), Expect = 8.7e-45
Identity = 97/205 (47.32%), Postives = 142/205 (69.27%), Query Frame = 0


Query: 2   SAKFELDKFDEKGDFGFWKKKMKALLVQQKVSKALDAPSKLPTSMSDAEKAEMAKIAYST 61
           S +FE+ KF+  GDF  W+KK++A+LVQ KV+K LD   +LP +++++EK +M ++ YST
Sbjct: 3   STRFEVSKFNGNGDFALWRKKIRAILVQHKVAKILD-EERLPENITESEKRDMDEMTYST 62

Query: 62  VILYLADNVLRRVSAIDNVSDLWTKLDELFLSKSLANKIYLKERLFDFKMDSSKGLEENI 121
           ++LYL+D VLR V     + +LW KL+ L++ KSL+NKIY+KE+ F +KMD SKGLEEN+
Sbjct: 63  ILLYLSDEVLRLVDEATTIGELWKKLESLYMKKSLSNKIYIKEKFFGYKMDQSKGLEENL 122

Query: 122 DDFCRICLDLVNASEQLDGENQVVILLNSLPDKYKEVKSDIRYECDKLTFDIVFDALQRR 181
           D+F +I +DL N  E++  ENQ VILLNSLP+ Y+EVK+ I+Y  D L   I+ DAL+ R
Sbjct: 123 DEFQKIIVDLNNIGEKMSDENQAVILLNSLPEIYREVKAAIKYGRDSLNMSIMLDALKTR 182

Query: 182 -----KGYESAEVLVITESNETDEW 202
                K  +  E+L+    +E   W
Sbjct: 183 NLEIKKERKDGELLMARRRSEKKSW 206

[Close]

BLAST of Cla97C11G218138 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.8e-22
Identity = 57/193 (29.53%), Postives = 108/193 (55.96%), Query Frame = 0


Query: 4   KFELDKFDEKGDFGFWKKKMKALLVQQKVSKALDAPSKLPTSMSDAEKAEMAKIAYSTVI 63
           K+E+ KF+    F  W+++M+ LL+QQ + K LD  SK P +M   + A++ + A S + 
Sbjct: 5   KYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASAIR 64

Query: 64  LYLADNVLRRVSAIDNVSDLWTKLDELFLSKSLANKIYLKERLFDFKMDSSKGLEENIDD 123
           L+L+D+V+  +   D    +WT+L+ L++SK+L NK+YLK++L+   M        +++ 
Sbjct: 65  LHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHLNV 124

Query: 124 FCRICLDLVNASEQLDGENQVVILLNSLPDKYKEVKSDIRY-----ECDKLTFDIVFDAL 183
           F  +   L N   +++ E++ ++LLNSLP  Y  + + I +     E   +T  ++ +  
Sbjct: 125 FNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIELKDVTSALLLNEK 184

Query: 184 QRRKGYESAEVLV 192
            R+K     + L+
Sbjct: 185 MRKKPENQGQALI 197

[Close]

BLAST of Cla97C11G218138 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 61.2 bits (147), Expect = 2.3e-08
Identity = 54/205 (26.34%), Postives = 105/205 (51.22%), Query Frame = 0


Query: 3   AKFELDKFDEKGDFGFWKKKMKALLVQQKVSKALDAPSKLPTSMSDA-EKAEMAKIAYST 62
           AK  +  FD +  +  WK +++ALL +Q V K +D    +P  + D+ +KAE  + A ST
Sbjct: 4   AKRNIKPFDGE-KYAIWKFRIRALLAEQDVLKVVD--GLMPNEVDDSWKKAE--RCAKST 63

Query: 63  VILYLADNVLRRVSAIDNVSDLWTKLDELFLSKSLANKIYLKERLFDFKMDSSKGLEENI 122
           +I YL+D+ L   ++      +   LD ++  KSLA+++ L++RL   K+ S   L  + 
Sbjct: 64  IIEYLSDSFLNFATSDITARQILENLDAVYERKSLASQLALRKRLLSLKLSSEMSLLSHF 123

Query: 123 DDFCRICLDLVNASEQLDGENQVVILLNSLPDKYKEVKSDIR-YECDKLTFDIVFDALQR 182
             F  +  +L+ A  +++  +++  LL +LP  Y  + + I     + LT   V + L  
Sbjct: 124 HIFDELISELLAAGAKIEEMDKISHLLITLPSCYDGIITAIETLSEENLTLAFVKNRLL- 183

Query: 183 RKGYESAEVLVITESNETDEWILDS 206
                  E+ +  + N+T + ++++
Sbjct: 184 -----DQEIKIKNDHNDTSKKVMNA 197

[Close]

BLAST of Cla97C11G218138 vs. ExPASy TrEMBL
Match: A0A2P5CTT8 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_273130 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 3.8e-46
Identity = 98/178 (55.06%), Postives = 134/178 (75.28%), Query Frame = 0


Query: 2   SAKFELDKFDEKGDFGFWKKKMKALLVQQKVSKALDAPSKLPTSMSDAEKAEMAKIAYST 61
           ++K E++KFD KGDF  WKKKMKA+LVQQK +K L   S LP +M  +EK E+ + AYS 
Sbjct: 3   TSKIEIEKFDGKGDFNMWKKKMKAVLVQQKCAKVLGDASGLPETMKPSEKEELLETAYSL 62

Query: 62  VILYLADNVLRRVSAIDNVSDLWTKLDELFLSKSLANKIYLKERLFDFKMDSSKGLEENI 121
           +IL LADNVLR+V   D  + +W+KLD L+L+K+L+NKIYLKE+LF FKMDS+K LE+N+
Sbjct: 63  LILNLADNVLRQVDEQDTAAKVWSKLDSLYLTKTLSNKIYLKEQLFGFKMDSTKSLEDNL 122

Query: 122 DDFCRICLDLVNASEQLDGENQVVILLNSLPDKYKEVKSDIRYECDKLTFDIVFDALQ 180
           DDF RI + L N  E+++ ENQ +I+LNSLP+ YK++KS I+Y  + L+ D V  AL+
Sbjct: 123 DDFKRITVSLANIDEKINDENQAIIILNSLPESYKDLKSTIKYGRESLSLDDVLRALR 180

[Close]

BLAST of Cla97C11G218138 vs. ExPASy TrEMBL
Match: A0A5D3DNU1 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004440 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 1.9e-45
Identity = 100/205 (48.78%), Postives = 142/205 (69.27%), Query Frame = 0


Query: 2   SAKFELDKFDEKGDFGFWKKKMKALLVQQKVSKALDAPSKLPTSMSDAEKAEMAKIAYST 61
           S +FE+ KF+  GDF  W+KK++A+LVQ KV+K LD   +LP +++++EK +M ++AYST
Sbjct: 3   STRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILD-EERLPDNITESEKRDMDEMAYST 62

Query: 62  VILYLADNVLRRVSAIDNVSDLWTKLDELFLSKSLANKIYLKERLFDFKMDSSKGLEENI 121
           ++LYL+D VLR V       +LW KL+ L+L+KSL NKIY+KE+ F +KMD SK LEEN+
Sbjct: 63  ILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKSLEENL 122

Query: 122 DDFCRICLDLVNASEQLDGENQVVILLNSLPDKYKEVKSDIRYECDKLTFDIVFDALQRR 181
           D+F +I +DL N  E++  ENQ VILLNSLP+ Y+EVK+ I+Y  D LT  IV DAL+ R
Sbjct: 123 DEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTR 182

Query: 182 -----KGYESAEVLVITESNETDEW 202
                K  +  E+L+    +E   W
Sbjct: 183 NLEIKKERKDGELLMARGRSEKKSW 206

[Close]

BLAST of Cla97C11G218138 vs. ExPASy TrEMBL
Match: A0A5A7UB25 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold560G00190 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 1.9e-45
Identity = 100/205 (48.78%), Postives = 142/205 (69.27%), Query Frame = 0


Query: 2   SAKFELDKFDEKGDFGFWKKKMKALLVQQKVSKALDAPSKLPTSMSDAEKAEMAKIAYST 61
           S +FE+ KF+  GDF  W+KK++A+LVQ KV+K LD   +LP +++++EK +M ++AYST
Sbjct: 3   STRFEVSKFNGHGDFSLWRKKIRAILVQHKVAKILD-EERLPDNITESEKRDMDEMAYST 62

Query: 62  VILYLADNVLRRVSAIDNVSDLWTKLDELFLSKSLANKIYLKERLFDFKMDSSKGLEENI 121
           ++LYL+D VLR V       +LW KL+ L+L+KSL NKIY+KE+ F +KMD SK LEEN+
Sbjct: 63  ILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLLNKIYIKEKFFGYKMDQSKSLEENL 122

Query: 122 DDFCRICLDLVNASEQLDGENQVVILLNSLPDKYKEVKSDIRYECDKLTFDIVFDALQRR 181
           D+F +I +DL N  E++  ENQ VILLNSLP+ Y+EVK+ I+Y  D LT  IV DAL+ R
Sbjct: 123 DEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTR 182

Query: 182 -----KGYESAEVLVITESNETDEW 202
                K  +  E+L+    +E   W
Sbjct: 183 NLEIKKERKDGELLMARGRSEKKSW 206

[Close]

BLAST of Cla97C11G218138 vs. ExPASy TrEMBL
Match: A0A5C7I661 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_011589 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.2e-45
Identity = 113/278 (40.65%), Postives = 175/278 (62.95%), Query Frame = 0


Query: 1   MSAKFELDKFDEKGDFGFWKKKMKALLVQQKVSKALDAPSKLPTSMSDAEKAEMAKIAYS 60
           MS KF++DKFD  GDFG W++K+KALL QQK+ KA++ P KLP S++  +K +M ++A  
Sbjct: 384 MSMKFDIDKFDGSGDFGIWRRKVKALLSQQKILKAIEGPEKLPDSLTVEQKDDMLEMALG 443

Query: 61  TVILYLADNVLRRVSAIDNVSDLWTKLDELFLSKSLANKIYLKERLFDFKMDSSKGLEEN 120
           T+IL L+DNVLR ++      D+W KL+ L+L+KSL NKIYLKERLF FKMD+SKGL +N
Sbjct: 444 TIILNLSDNVLREINDEKTACDVWKKLESLYLTKSLTNKIYLKERLFGFKMDASKGLGKN 503

Query: 121 IDDFCRICLDLVNA--SEQLDGENQVVILLNSLPDKYKEVKSDIRYECDKLTFDIVFDAL 180
           +DDF ++ ++L NA   E+L  EN+ +ILLNSLPD +K+VK+ I+Y    L+ +    AL
Sbjct: 504 LDDFKKMTIELANAGEDEKLSDENEAIILLNSLPDSFKDVKAAIKYGRSSLSLEECISAL 563

Query: 181 QRRKGYESAEVLVITESNETDEWILDSGSLQSTTYQSE--VEEGYTHRLQ-YISNKEMST 240
                 +S E+ +  E  +  E +    +++   ++ E        H++Q + +N   +T
Sbjct: 564 ------KSKELELKIEKKDNGENLFVRDTVEENPFEDERAAHSDGIHQVQKHNTNLSKTT 623

Query: 241 FQVQRRPY---KNTKTKVKRMLLKSLDFGHLKQTVSKE 271
            +V  + +    NT +K+K  +  S   GH+ +T + E
Sbjct: 624 SEVVAKRFVLDANTISKLKAEVTSSCGGGHMHKTSTTE 655

[Close]

BLAST of Cla97C11G218138 vs. ExPASy TrEMBL
Match: A0A5A7U459 (Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00520 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 4.2e-45
Identity = 97/205 (47.32%), Postives = 142/205 (69.27%), Query Frame = 0


Query: 2   SAKFELDKFDEKGDFGFWKKKMKALLVQQKVSKALDAPSKLPTSMSDAEKAEMAKIAYST 61
           S +FE+ KF+  GDF  W+KK++A+LVQ KV+K LD   +LP +++++EK +M ++ YST
Sbjct: 3   STRFEVSKFNGNGDFALWRKKIRAILVQHKVAKILD-EERLPENITESEKRDMDEMTYST 62

Query: 62  VILYLADNVLRRVSAIDNVSDLWTKLDELFLSKSLANKIYLKERLFDFKMDSSKGLEENI 121
           ++LYL+D VLR V     + +LW KL+ L++ KSL+NKIY+KE+ F +KMD SKGLEEN+
Sbjct: 63  ILLYLSDEVLRLVDEATTIGELWKKLESLYMKKSLSNKIYIKEKFFGYKMDQSKGLEENL 122

Query: 122 DDFCRICLDLVNASEQLDGENQVVILLNSLPDKYKEVKSDIRYECDKLTFDIVFDALQRR 181
           D+F +I +DL N  E++  ENQ VILLNSLP+ Y+EVK+ I+Y  D L   I+ DAL+ R
Sbjct: 123 DEFQKIIVDLNNIGEKMSDENQAVILLNSLPEIYREVKAAIKYGRDSLNMSIMLDALKTR 182

Query: 182 -----KGYESAEVLVITESNETDEW 202
                K  +  E+L+    +E   W
Sbjct: 183 NLEIKKERKDGELLMARRRSEKKSW 206

The following BLAST results are available for this feature:

BLAST of Cla97C11G218138 vs. NCBI nr


Match Name	E-value	Identity	Description
PON64464.1	7.9e-46	55.06	hypothetical protein TorRG33x02_273130 [Trema orientale]	[more]
TYK25306.1	3.9e-45	48.78	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0050719.1	3.9e-45	48.78	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
TXG64595.1	6.7e-45	40.65	hypothetical protein EZV62_011589 [Acer yangbiense]	[more]
KAA0050070.1	8.7e-45	47.32	putative polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of Cla97C11G218138 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	4.8e-22	29.53	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	2.3e-08	26.34	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of Cla97C11G218138 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5CTT8	3.8e-46	55.06	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_273130 PE=4 SV...	[more]
A0A5D3DNU1	1.9e-45	48.78	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7UB25	1.9e-45	48.78	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5C7I661	3.2e-45	40.65	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_011589 PE=3 SV=1	[more]
A0A5A7U459	4.2e-45	47.32	Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675...	[more]

BLAST of Cla97C11G218138 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 56..181 e-value: 1.6E-25 score: 89.5
None	No IPR available	PANTHER	PTHR34676:SF6	SUBFAMILY NOT NAMED	coord: 1..179
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 1..179

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C11G218138.1	Cla97C11G218138.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0071704	organic substance metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016740	transferase activity