Cla97C11G216990 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C11G216990
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	50S ribosomal protein L2, chloroplastic
Location	Cla97Chr11: 20154841 .. 20158033 (-)
RNA-Seq Expression	Cla97C11G216990
Synteny	Cla97C11G216990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGATGTCTTGTCTAAGAAGAAGGAGTTTGGGCAATTTGAGATGATCAGCATGATAGAGAAGTGTAGTGTTGTGCTGCAAAAGAAGCTACCACAAAAACTAAAAGATCTAGGGAGTTTTCCTATACCTTGCACTATTGGTTCTTTGAATGTTACTAGAGCTCTTTGTGATATTGGTGCTTCTATTAACTTAATGCCTTTATGTGTCTATAGGAAGTTTGACATTGGAGAAGTACAACCCACCACAATCACCTTGCATTTAGGTAATAGATCCTTGGCCTATCCTAGATGTATTGTTAAGGATGTGTTAGTTAAAGTTGACAAGTTTATCTTCACTGCAGATTTGTAGTCTTAGATATGGAGGAGGATTCTGCGATACGAGGATTCTGCGATACCTATCATTCTTGGGTGCCCATTCCTAGCAACTGGAAAGGTCATCATTGATGTCCAACAAGGGAACTTGACGCTAAGGGTAAATGAGGAGAATGTTGTCTTTAATATGAAATTTGGCAAATGGATGTCAAGACAGCTTTTCTGAACGGCTATCTTGAGGAGAGTATCTATATGGTTCAACTAGAGGGGTTTATAGAACAAGGTCAAGAGCAAAAGTTTTGCAAGCTTAAAAGATCCATTTATGGATTTAACAAGCATCTCGATCTTGGAATATGAGGTTTGATATTGCGATCAAATCTTATAGCTTTAAACATAATGTTGATGAACCTTGTGTTTATAAAAAGATCATCAACAAAACTGTAGCATTTTAGTATTGTACATTGATGATATTCTTCTTTTTGGGAATGAGAAAGGATTCTTGACTGACATTAAACAATGGCTAGCAACCCAATTCCAAATGAATGATTTGGGAGAGGCTCAGTATGTTCTTGGAATCCAAATAGTTCTTGAATCGCAAGAACAAAATGTTAGCTATGTCTCAAGCATCATATATTGACAAAATGTTGTCTAGATATAAGATGCGAAATTCTAAAAAAGGTCTTCTGCTGTTTAGATATGGAATTCATTTTTCAAAGGAACAGTGTCCTAAAACACCTTAAGAAGTTCAGGATATGAGACATATTCCTTATGCTCCAACAGTCGGTAGTTTGATGTATGTCATGCTGTGTAGATGACCTGACATATGCTATGCAGTTGGGATTGTTAGTAGGTATCAGTCTAATCCTAGATATGATTATTGGACTACCGTTAAAAATATCCTCAAGTATCTAAGGAGAACGAGGGACTACATGCTTGTATATGGTGTTAAGGATCTGATCCTTACAGGATACACTGATTCTGATTTTCAGACCGATATAGATTCAAGGAAATCTACATCTGGATCAGTGTTCACTCTAAACAAAGGAGCAGTAGTATGGAGGAGTATTAAACAAAATTGTATTGTTGACTCCATCATGGAAGCTGAGTACGTAGTTGCATGTGAAGTGGCTAAGGAAGTTGTATGGCTCAAGAAGTTCTTAACAGATCTAGAAGTTGCTCCAAATATGCATCTGCCTATCACTCTTTATTGTGATAATAGTGGCGCAATTGCAAACTCCAAAGAACCTAGAAGCCATAAGCGTGACAAACACATTGAACGAAAATATCATCTCATCAGAGAAATTGTGCAAAGAGGTGATGTGACTACCCAATAGATCGTGTCAGACCACAATATTGTTGATCCATTTATAAAGGCTCTCACAGCTAAAGTGTTTGAGGGTCACCTGATGAATCTAGGACTTTAAGTTGTGTAAATTCGAACAAGTGGGAGAAAGCTAGCTACTAGGTATTTGATGCCCTAGTTTATTGTATTTATATGTTTTTCTTTTGTAAGCTCAACTGTATATACTTACTGTGGAGTTTTAGTCCAAGTGGGAGTTTTTTAGGTTTTATGTCCTAAAACTCGTTGTTTGTAATTTATGGATTTTATTCTCTATAAAGTTATTATCGAGATTTATTTAATAAAGTTGTTATTGAATATGTGAATTGCATTTAAATTCAATAAAATAAGAACTCATGGCTATATAGGGAATGCTTAGACTTTATATGATAAAAGTGGATCAAGTTTAAGTTATAGCCAAAATGGTCTATAGTATTTGGATAAAGGTTAGGTACCTTATCTTGGGGACATTATGAATACCACCCACTTAGTATTTGATACATACGGTGTGATCCTAAATCGTTCATGTAGAGACATGTGAGTGGAGATATCCTATGCAATGAGTTTGCATAAGATTAGACTTAGAAATAATCACGTTTACTTTATAACACCATTTACTGTTAAAACTGATTATTTCAACTTGATGACCTAAGTAACTCGATCTTAATCCTGAGCTAACTATGAAATCCTATTTGTTTGAGATTATCCTTTAATCTACATGGGTGAGAGTGGCCAATTTGTTGACTCAATATGCCTCCCATTTTAGGGACAAGATCAGACAGATTGCTGGGGACATAGTTCTGCAAGATGGAATTCACTTCTATCTTATTAAAGGATAGTAGATAAGTTGTTCCCATAAGTATTGAATCCAGGTTTTGAGCAAGGGGCCCCACCCCCTCATTGGCCCGAGAGGGATTCAGTTTGTTGGTTGGACCACAAATCAATTGTTTGGGTCGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCGGGAAAGGGTAGAAGAATGGGACCTATTATGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAACCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAAATCAAAATACTTAATAGCATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGTCAAGTAAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAAAAGACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGGTTTGA

mRNA sequence

ATGAAAGATGTCTTGTCTAAGAAGAAGGAGTTTGGGCAATTTGAGATGATCAGCATGATAGAGAAGTGTAGTGTTGTGCTGCAAAAGAAGCTACCACAAAAACTAAAAGATCTAGGGAGTTTTCCTATACCTTGCACTATTGGTTCTTTGAATGTTACTAGAGCTCTTTGTGATATTGGTGCTTCTATTAACTTAATGCCTTTATGTGTCTATAGGAAGTTTGACATTGGAGAAGTACAACCCACCACAATCACCTTGCATTTAGTCTTAGATATGGAGGAGGATTCTGCGATACGAGGATTCTGCGATACCTATCATTCTTGGGTGCCCATTCCTAGCAACTGGAAAGTTGGGATTGTTAGTAGGTATCAGTCTAATCCTAGATATGATTATTGGACTACCGTTAAAAATATCCTCAAGTATCTAAGGAGAACGAGGGACTACATGCTTGTATATGGTGTTAAGGATCTGATCCTTACAGGATACACTGATTCTGATTTTCAGACCGATATAGATTCAAGGAAATCTACATCTGGATCAGTGTTCACTCTAAACAAAGGAGCAGTAGTATGGAGGAGTATTAAACAAAATTGTATTGTTGACTCCATCATGGAAGCTGAGTACGTAGTTGCATGTGAAGTGGCTAAGGAAGTTGTATGGCTCAAGAAGTTCTTAACAGATCTAGAAGTTGCTCCAAATATGCATCTGCCTATCACTCTTTATTGTGATAATAGTGGCGCAATTGCAAACTCCAAAGAACCTAGAAGCCATAAGCGTGACAAACACATTGAACGAAAATATCATCTCATCAGAGAAATTGTGCAAAGAGGTTTTGAGCAAGGGGCCCCACCCCCTCATTGGCCCGAGAGGGATTCAGTTTGTTGGTTGGACCACAAATCAATTGTTTGGGTCGAACTCTTCTTTGGTGTCAAGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAAAAGACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGGTTTGA

Coding sequence (CDS)

ATGAAAGATGTCTTGTCTAAGAAGAAGGAGTTTGGGCAATTTGAGATGATCAGCATGATAGAGAAGTGTAGTGTTGTGCTGCAAAAGAAGCTACCACAAAAACTAAAAGATCTAGGGAGTTTTCCTATACCTTGCACTATTGGTTCTTTGAATGTTACTAGAGCTCTTTGTGATATTGGTGCTTCTATTAACTTAATGCCTTTATGTGTCTATAGGAAGTTTGACATTGGAGAAGTACAACCCACCACAATCACCTTGCATTTAGTCTTAGATATGGAGGAGGATTCTGCGATACGAGGATTCTGCGATACCTATCATTCTTGGGTGCCCATTCCTAGCAACTGGAAAGTTGGGATTGTTAGTAGGTATCAGTCTAATCCTAGATATGATTATTGGACTACCGTTAAAAATATCCTCAAGTATCTAAGGAGAACGAGGGACTACATGCTTGTATATGGTGTTAAGGATCTGATCCTTACAGGATACACTGATTCTGATTTTCAGACCGATATAGATTCAAGGAAATCTACATCTGGATCAGTGTTCACTCTAAACAAAGGAGCAGTAGTATGGAGGAGTATTAAACAAAATTGTATTGTTGACTCCATCATGGAAGCTGAGTACGTAGTTGCATGTGAAGTGGCTAAGGAAGTTGTATGGCTCAAGAAGTTCTTAACAGATCTAGAAGTTGCTCCAAATATGCATCTGCCTATCACTCTTTATTGTGATAATAGTGGCGCAATTGCAAACTCCAAAGAACCTAGAAGCCATAAGCGTGACAAACACATTGAACGAAAATATCATCTCATCAGAGAAATTGTGCAAAGAGGTTTTGAGCAAGGGGCCCCACCCCCTCATTGGCCCGAGAGGGATTCAGTTTGTTGGTTGGACCACAAATCAATTGTTTGGGTCGAACTCTTCTTTGGTGTCAAGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAAAAGACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGGTTTGA

Protein sequence

MKDVLSKKKEFGQFEMISMIEKCSVVLQKKLPQKLKDLGSFPIPCTIGSLNVTRALCDIGASINLMPLCVYRKFDIGEVQPTTITLHLVLDMEEDSAIRGFCDTYHSWVPIPSNWKVGIVSRYQSNPRYDYWTTVKNILKYLRRTRDYMLVYGVKDLILTGYTDSDFQTDIDSRKSTSGSVFTLNKGAVVWRSIKQNCIVDSIMEAEYVVACEVAKEVVWLKKFLTDLEVAPNMHLPITLYCDNSGAIANSKEPRSHKRDKHIERKYHLIREIVQRGFEQGAPPPHWPERDSVCWLDHKSIVWVELFFGVKHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV

Homology

[Close]

BLAST of Cla97C11G216990 vs. NCBI nr
Match: KAA0061170.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 289.7 bits (740), Expect = 4.1e-74
Identity = 142/163 (87.12%), Postives = 148/163 (90.80%), Query Frame = 0


Query: 115 WKVGIVSRYQSNPRYDYWTTVKNILKYLRRTRDYMLVYGVKDLILTGYTDSDFQTDIDSR 174
           + VGIVSRYQSNP  D+WTTVK ILKYLRRTRDYMLVYG KDLILTGYTDSDFQTD DSR
Sbjct: 193 YAVGIVSRYQSNPGLDHWTTVKIILKYLRRTRDYMLVYGAKDLILTGYTDSDFQTDKDSR 252

Query: 175 KSTSGSVFTLNKGAVVWRSIKQNCIVDSIMEAEYVVACEVAKEVVWLKKFLTDLEVAPNM 234
           KSTSGSVFTLN+GAVVWRSIKQ CI DS MEAEYV ACE AKE VWL+KFL DLEV PNM
Sbjct: 253 KSTSGSVFTLNEGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNM 312

Query: 235 HLPITLYCDNSGAIANSKEPRSHKRDKHIERKYHLIREIVQRG 278
           +LPITLYCDNSGA+ANSKEPRSHKR KHIERKYHLIREIVQRG
Sbjct: 313 NLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRG 355

[Close]

BLAST of Cla97C11G216990 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 288.5 bits (737), Expect = 9.1e-74
Identity = 139/163 (85.28%), Postives = 147/163 (90.18%), Query Frame = 0


Query: 115  WKVGIVSRYQSNPRYDYWTTVKNILKYLRRTRDYMLVYGVKDLILTGYTDSDFQTDIDSR 174
            + VGIVSRYQSNP  D+WT VKNILKYLRRTR+YMLVYG KDLILTGYTDSDFQ+D D+R
Sbjct: 1124 YSVGIVSRYQSNPGRDHWTAVKNILKYLRRTRNYMLVYGAKDLILTGYTDSDFQSDKDAR 1183

Query: 175  KSTSGSVFTLNKGAVVWRSIKQNCIVDSIMEAEYVVACEVAKEVVWLKKFLTDLEVAPNM 234
            KSTSGSVFTLN GAVVWRS+KQ CI DS MEAEYV ACE AKE VWL+KFLTDLEV PNM
Sbjct: 1184 KSTSGSVFTLNGGAVVWRSVKQTCIADSTMEAEYVAACEAAKEAVWLRKFLTDLEVVPNM 1243

Query: 235  HLPITLYCDNSGAIANSKEPRSHKRDKHIERKYHLIREIVQRG 278
            HLPITLYCDNSGA+ANSKEPRSHKR KHIERKYHLIREIV RG
Sbjct: 1244 HLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVHRG 1286

[Close]

BLAST of Cla97C11G216990 vs. NCBI nr
Match: KAA0042496.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 286.6 bits (732), Expect = 3.4e-73
Identity = 141/163 (86.50%), Postives = 146/163 (89.57%), Query Frame = 0


Query: 115 WKVGIVSRYQSNPRYDYWTTVKNILKYLRRTRDYMLVYGVKDLILTGYTDSDFQTDIDSR 174
           + VGIVSRYQSNP  D+WT VK ILKYLRRTRDYMLVYG KDLILTGYTDSDFQTD DSR
Sbjct: 97  YAVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVYGAKDLILTGYTDSDFQTDKDSR 156

Query: 175 KSTSGSVFTLNKGAVVWRSIKQNCIVDSIMEAEYVVACEVAKEVVWLKKFLTDLEVAPNM 234
           KSTSGSVFTLN GAVVWRSIKQ CI DS MEAEYV ACE AKE VWL+KFL DLEV PNM
Sbjct: 157 KSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNM 216

Query: 235 HLPITLYCDNSGAIANSKEPRSHKRDKHIERKYHLIREIVQRG 278
           +LPITLYCDNSGA+ANSKEPRSHKR KHIERKYHLIREIVQRG
Sbjct: 217 NLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRG 259

[Close]

BLAST of Cla97C11G216990 vs. NCBI nr
Match: KAA0051362.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 286.6 bits (732), Expect = 3.4e-73
Identity = 137/163 (84.05%), Postives = 149/163 (91.41%), Query Frame = 0


Query: 115 WKVGIVSRYQSNPRYDYWTTVKNILKYLRRTRDYMLVYGVKDLILTGYTDSDFQTDIDSR 174
           + VGIVSRYQSNP  D+WT +KNILKYLRRT+DYMLVYG KDLILTGYTDSDFQTD D R
Sbjct: 26  YSVGIVSRYQSNPVRDHWTAIKNILKYLRRTKDYMLVYGSKDLILTGYTDSDFQTDKDDR 85

Query: 175 KSTSGSVFTLNKGAVVWRSIKQNCIVDSIMEAEYVVACEVAKEVVWLKKFLTDLEVAPNM 234
           KSTSGSVFTLN GA+VWRSI+Q+CIVDSIMEAEYV  CE AKE VWLKKFLTDLEV PNM
Sbjct: 86  KSTSGSVFTLNGGAIVWRSIEQSCIVDSIMEAEYVATCEAAKEAVWLKKFLTDLEVVPNM 145

Query: 235 HLPITLYCDNSGAIANSKEPRSHKRDKHIERKYHLIREIVQRG 278
           HLPITLYCDNSGA+ANS+EPRSHKR+K+IERKYHLIR+IV RG
Sbjct: 146 HLPITLYCDNSGAVANSREPRSHKREKNIERKYHLIRKIVHRG 188

[Close]

BLAST of Cla97C11G216990 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 286.2 bits (731), Expect = 4.5e-73
Identity = 140/163 (85.89%), Postives = 146/163 (89.57%), Query Frame = 0


Query: 115  WKVGIVSRYQSNPRYDYWTTVKNILKYLRRTRDYMLVYGVKDLILTGYTDSDFQTDIDSR 174
            + VGIVSRYQSNP  D+WT VK +LKYLRRTRDYMLVYG KDLILTGYTDSDFQTD DSR
Sbjct: 1032 YAVGIVSRYQSNPGLDHWTAVKIVLKYLRRTRDYMLVYGAKDLILTGYTDSDFQTDKDSR 1091

Query: 175  KSTSGSVFTLNKGAVVWRSIKQNCIVDSIMEAEYVVACEVAKEVVWLKKFLTDLEVAPNM 234
            KSTSGSVFTLN GAVVWRSIKQ CI DS MEAEYV ACE AKE VWL+KFL DLEV PNM
Sbjct: 1092 KSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNM 1151

Query: 235  HLPITLYCDNSGAIANSKEPRSHKRDKHIERKYHLIREIVQRG 278
            +LPITLYCDNSGA+ANSKEPRSHKR KHIERKYHLIREIVQRG
Sbjct: 1152 NLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRG 1194

[Close]

BLAST of Cla97C11G216990 vs. ExPASy Swiss-Prot
Match: Q09MB2 (50S ribosomal protein L2, chloroplastic OS=Citrus sinensis OX=2711 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 4.5e-52
Identity = 98/103 (95.15%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 306 LFFGVKHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAY 365
           L +G +HRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAY
Sbjct: 30  LIYG-QHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAY 89

Query: 366 ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 409
           ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Sbjct: 90  ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLT 131

[Close]

BLAST of Cla97C11G216990 vs. ExPASy Swiss-Prot
Match: Q4VZK5 (50S ribosomal protein L2, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 4.5e-52
Identity = 98/103 (95.15%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 306 LFFGVKHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAY 365
           L +G +HRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAY
Sbjct: 30  LIYG-QHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAY 89

Query: 366 ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 409
           ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Sbjct: 90  ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLT 131

[Close]

BLAST of Cla97C11G216990 vs. ExPASy Swiss-Prot
Match: Q0G9P9 (50S ribosomal protein L2, chloroplastic OS=Daucus carota OX=4039 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 4.5e-52
Identity = 98/103 (95.15%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 306 LFFGVKHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAY 365
           L +G +HRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAY
Sbjct: 30  LIYG-QHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAY 89

Query: 366 ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 409
           ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Sbjct: 90  ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLT 131

[Close]

BLAST of Cla97C11G216990 vs. ExPASy Swiss-Prot
Match: Q0ZIX7 (50S ribosomal protein L2, chloroplastic OS=Vitis vinifera OX=29760 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 4.5e-52
Identity = 98/103 (95.15%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 306 LFFGVKHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAY 365
           L +G +HRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAY
Sbjct: 30  LIYG-QHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAY 89

Query: 366 ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 409
           ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Sbjct: 90  ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLT 131

[Close]

BLAST of Cla97C11G216990 vs. ExPASy Swiss-Prot
Match: A0A398 (50S ribosomal protein L2-B, chloroplastic OS=Coffea arabica OX=13443 GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 5.9e-52
Identity = 98/104 (94.23%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 306 LFFGVKHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAY 365
           L +G +HRCGKGRNARGIITAGHRGGGHKRLYRKIDFRR EKDIYGRIVTIEYDPNRNAY
Sbjct: 30  LIYG-QHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRTEKDIYGRIVTIEYDPNRNAY 89

Query: 366 ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSA 410
           ICLIHYGDGEKRYILHPRGA+IGDTIVSGTEVPIKMGNALPLSA
Sbjct: 90  ICLIHYGDGEKRYILHPRGALIGDTIVSGTEVPIKMGNALPLSA 132

[Close]

BLAST of Cla97C11G216990 vs. ExPASy TrEMBL
Match: A0A5A7V1F5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00440 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 2.0e-74
Identity = 142/163 (87.12%), Postives = 148/163 (90.80%), Query Frame = 0


Query: 115 WKVGIVSRYQSNPRYDYWTTVKNILKYLRRTRDYMLVYGVKDLILTGYTDSDFQTDIDSR 174
           + VGIVSRYQSNP  D+WTTVK ILKYLRRTRDYMLVYG KDLILTGYTDSDFQTD DSR
Sbjct: 193 YAVGIVSRYQSNPGLDHWTTVKIILKYLRRTRDYMLVYGAKDLILTGYTDSDFQTDKDSR 252

Query: 175 KSTSGSVFTLNKGAVVWRSIKQNCIVDSIMEAEYVVACEVAKEVVWLKKFLTDLEVAPNM 234
           KSTSGSVFTLN+GAVVWRSIKQ CI DS MEAEYV ACE AKE VWL+KFL DLEV PNM
Sbjct: 253 KSTSGSVFTLNEGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNM 312

Query: 235 HLPITLYCDNSGAIANSKEPRSHKRDKHIERKYHLIREIVQRG 278
           +LPITLYCDNSGA+ANSKEPRSHKR KHIERKYHLIREIVQRG
Sbjct: 313 NLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRG 355

[Close]

BLAST of Cla97C11G216990 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 4.4e-74
Identity = 139/163 (85.28%), Postives = 147/163 (90.18%), Query Frame = 0


Query: 115  WKVGIVSRYQSNPRYDYWTTVKNILKYLRRTRDYMLVYGVKDLILTGYTDSDFQTDIDSR 174
            + VGIVSRYQSNP  D+WT VKNILKYLRRTR+YMLVYG KDLILTGYTDSDFQ+D D+R
Sbjct: 1124 YSVGIVSRYQSNPGRDHWTAVKNILKYLRRTRNYMLVYGAKDLILTGYTDSDFQSDKDAR 1183

Query: 175  KSTSGSVFTLNKGAVVWRSIKQNCIVDSIMEAEYVVACEVAKEVVWLKKFLTDLEVAPNM 234
            KSTSGSVFTLN GAVVWRS+KQ CI DS MEAEYV ACE AKE VWL+KFLTDLEV PNM
Sbjct: 1184 KSTSGSVFTLNGGAVVWRSVKQTCIADSTMEAEYVAACEAAKEAVWLRKFLTDLEVVPNM 1243

Query: 235  HLPITLYCDNSGAIANSKEPRSHKRDKHIERKYHLIREIVQRG 278
            HLPITLYCDNSGA+ANSKEPRSHKR KHIERKYHLIREIV RG
Sbjct: 1244 HLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVHRG 1286

[Close]

BLAST of Cla97C11G216990 vs. ExPASy TrEMBL
Match: A0A5A7TKM4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G00470 PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 1.7e-73
Identity = 141/163 (86.50%), Postives = 146/163 (89.57%), Query Frame = 0


Query: 115 WKVGIVSRYQSNPRYDYWTTVKNILKYLRRTRDYMLVYGVKDLILTGYTDSDFQTDIDSR 174
           + VGIVSRYQSNP  D+WT VK ILKYLRRTRDYMLVYG KDLILTGYTDSDFQTD DSR
Sbjct: 97  YAVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVYGAKDLILTGYTDSDFQTDKDSR 156

Query: 175 KSTSGSVFTLNKGAVVWRSIKQNCIVDSIMEAEYVVACEVAKEVVWLKKFLTDLEVAPNM 234
           KSTSGSVFTLN GAVVWRSIKQ CI DS MEAEYV ACE AKE VWL+KFL DLEV PNM
Sbjct: 157 KSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNM 216

Query: 235 HLPITLYCDNSGAIANSKEPRSHKRDKHIERKYHLIREIVQRG 278
           +LPITLYCDNSGA+ANSKEPRSHKR KHIERKYHLIREIVQRG
Sbjct: 217 NLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRG 259

[Close]

BLAST of Cla97C11G216990 vs. ExPASy TrEMBL
Match: A0A5A7U6B9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00860 PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 1.7e-73
Identity = 137/163 (84.05%), Postives = 149/163 (91.41%), Query Frame = 0


Query: 115 WKVGIVSRYQSNPRYDYWTTVKNILKYLRRTRDYMLVYGVKDLILTGYTDSDFQTDIDSR 174
           + VGIVSRYQSNP  D+WT +KNILKYLRRT+DYMLVYG KDLILTGYTDSDFQTD D R
Sbjct: 26  YSVGIVSRYQSNPVRDHWTAIKNILKYLRRTKDYMLVYGSKDLILTGYTDSDFQTDKDDR 85

Query: 175 KSTSGSVFTLNKGAVVWRSIKQNCIVDSIMEAEYVVACEVAKEVVWLKKFLTDLEVAPNM 234
           KSTSGSVFTLN GA+VWRSI+Q+CIVDSIMEAEYV  CE AKE VWLKKFLTDLEV PNM
Sbjct: 86  KSTSGSVFTLNGGAIVWRSIEQSCIVDSIMEAEYVATCEAAKEAVWLKKFLTDLEVVPNM 145

Query: 235 HLPITLYCDNSGAIANSKEPRSHKRDKHIERKYHLIREIVQRG 278
           HLPITLYCDNSGA+ANS+EPRSHKR+K+IERKYHLIR+IV RG
Sbjct: 146 HLPITLYCDNSGAVANSREPRSHKREKNIERKYHLIRKIVHRG 188

[Close]

BLAST of Cla97C11G216990 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 2.2e-73
Identity = 140/163 (85.89%), Postives = 146/163 (89.57%), Query Frame = 0


Query: 115  WKVGIVSRYQSNPRYDYWTTVKNILKYLRRTRDYMLVYGVKDLILTGYTDSDFQTDIDSR 174
            + VGIVSRYQSNP  D+WT VK +LKYLRRTRDYMLVYG KDLILTGYTDSDFQTD DSR
Sbjct: 1032 YAVGIVSRYQSNPGLDHWTAVKIVLKYLRRTRDYMLVYGAKDLILTGYTDSDFQTDKDSR 1091

Query: 175  KSTSGSVFTLNKGAVVWRSIKQNCIVDSIMEAEYVVACEVAKEVVWLKKFLTDLEVAPNM 234
            KSTSGSVFTLN GAVVWRSIKQ CI DS MEAEYV ACE AKE VWL+KFL DLEV PNM
Sbjct: 1092 KSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNM 1151

Query: 235  HLPITLYCDNSGAIANSKEPRSHKRDKHIERKYHLIREIVQRG 278
            +LPITLYCDNSGA+ANSKEPRSHKR KHIERKYHLIREIVQRG
Sbjct: 1152 NLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRG 1194

[Close]

BLAST of Cla97C11G216990 vs. TAIR 10
Match: ATCG00830.1 (ribosomal protein L2 )

HSP 1 Score: 198.7 bits (504), Expect = 8.8e-51
Identity = 93/98 (94.90%), Postives = 95/98 (96.94%), Query Frame = 0


Query: 311 KHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIH 370
           +H CGKGRNARGIITA HRGGGHKRLYRKIDFRRN KDIYGRIVTIEYDPNRNAYICLIH
Sbjct: 34  QHHCGKGRNARGIITARHRGGGHKRLYRKIDFRRNAKDIYGRIVTIEYDPNRNAYICLIH 93

Query: 371 YGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 409
           YGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Sbjct: 94  YGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLT 131

[Close]

BLAST of Cla97C11G216990 vs. TAIR 10
Match: ATCG01310.1 (ribosomal protein L2 )

HSP 1 Score: 198.7 bits (504), Expect = 8.8e-51
Identity = 93/98 (94.90%), Postives = 95/98 (96.94%), Query Frame = 0


Query: 311 KHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIH 370
           +H CGKGRNARGIITA HRGGGHKRLYRKIDFRRN KDIYGRIVTIEYDPNRNAYICLIH
Sbjct: 34  QHHCGKGRNARGIITARHRGGGHKRLYRKIDFRRNAKDIYGRIVTIEYDPNRNAYICLIH 93

Query: 371 YGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 409
           YGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Sbjct: 94  YGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLT 131

[Close]

BLAST of Cla97C11G216990 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 84.3 bits (207), Expect = 2.4e-16
Identity = 51/160 (31.87%), Postives = 84/160 (52.50%), Query Frame = 0


Query: 114 NWKVGIVSRYQSNPRYDYWTTVKNILKYLRRTRDYMLVYGVK-DLILTGYTDSDFQTDID 173
           ++ V  +S++   PR  +   V  IL Y++ T    L Y  + ++ L  ++D+ FQ+  D
Sbjct: 396 SFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKD 455

Query: 174 SRKSTSGSVFTLNKGAVVWRSIKQNCIVDSIMEAEYVVACEVAKEVVWLKKFLTDLEVAP 233
           +R+ST+G    L    + W+S KQ  +  S  EAEY        E++WL +F  +L++  
Sbjct: 456 TRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLP- 515

Query: 234 NMHLPITLYCDNSGAIANSKEPRSHKRDKHIERKYHLIRE 273
            +  P  L+CDN+ AI  +     H+R KHIE   H +RE
Sbjct: 516 -LSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRE 553

[Close]

BLAST of Cla97C11G216990 vs. TAIR 10
Match: AT2G07715.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 55.8 bits (133), Expect = 9.2e-08
Identity = 28/58 (48.28%), Postives = 39/58 (67.24%), Query Frame = 0


Query: 317 GRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDG 375
           GRN+ G IT  HRGGG KRL R+ID +R+   + G + +IEYDPNR++ I  + +  G
Sbjct: 21  GRNSSGRITVFHRGGGSKRLLRRIDLKRSTSSM-GIVESIEYDPNRSSQIAPVRWIKG 77

[Close]

BLAST of Cla97C11G216990 vs. TAIR 10
Match: ATMG00560.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 55.8 bits (133), Expect = 9.2e-08
Identity = 28/58 (48.28%), Postives = 39/58 (67.24%), Query Frame = 0


Query: 317 GRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDG 375
           GRN+ G IT  HRGGG KRL R+ID +R+   + G + +IEYDPNR++ I  + +  G
Sbjct: 21  GRNSSGRITVFHRGGGSKRLLRRIDLKRSTSSM-GIVESIEYDPNRSSQIAPVRWIKG 77

The following BLAST results are available for this feature:

BLAST of Cla97C11G216990 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061170.1	4.1e-74	87.12	gag/pol protein [Cucumis melo var. makuwa]	[more]
ADJ18449.1	9.1e-74	85.28	gag/pol protein, partial [Bryonia dioica]	[more]
KAA0042496.1	3.4e-73	86.50	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0051362.1	3.4e-73	84.05	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0025945.1	4.5e-73	85.89	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]

BLAST of Cla97C11G216990 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q09MB2	4.5e-52	95.15	50S ribosomal protein L2, chloroplastic OS=Citrus sinensis OX=2711 GN=rpl2-A PE=...	[more]
Q4VZK5	4.5e-52	95.15	50S ribosomal protein L2, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl2-A PE=...	[more]
Q0G9P9	4.5e-52	95.15	50S ribosomal protein L2, chloroplastic OS=Daucus carota OX=4039 GN=rpl2-A PE=3 ...	[more]
Q0ZIX7	4.5e-52	95.15	50S ribosomal protein L2, chloroplastic OS=Vitis vinifera OX=29760 GN=rpl2-A PE=...	[more]
A0A398	5.9e-52	94.23	50S ribosomal protein L2-B, chloroplastic OS=Coffea arabica OX=13443 GN=rpl2-B P...	[more]

BLAST of Cla97C11G216990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V1F5	2.0e-74	87.12	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G0044...	[more]
E2GK51	4.4e-74	85.28	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]
A0A5A7TKM4	1.7e-73	86.50	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G0047...	[more]
A0A5A7U6B9	1.7e-73	84.05	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00860...	[more]
A0A5A7TZD0	2.2e-73	85.89	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]

BLAST of Cla97C11G216990 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00830.1	8.8e-51	94.90	ribosomal protein L2	[more]
ATCG01310.1	8.8e-51	94.90	ribosomal protein L2	[more]
AT4G23160.1	2.4e-16	31.88	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
AT2G07715.1	9.2e-08	48.28	Nucleic acid-binding, OB-fold-like protein	[more]
ATMG00560.1	9.2e-08	48.28	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002171	Ribosomal protein L2	SMART	SM01383	Ribosomal_L2_2	coord: 317..393 e-value: 1.6E-35 score: 134.0
IPR002171	Ribosomal protein L2	PANTHER	PTHR13691	RIBOSOMAL PROTEIN L2	coord: 308..409
None	No IPR available	GENE3D	2.40.50.140		coord: 305..392 e-value: 1.8E-34 score: 119.7
None	No IPR available	PANTHER	PTHR13691:SF55	50S RIBOSOMAL PROTEIN L2, CHLOROPLASTIC	coord: 308..409
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 160..277 e-value: 5.74941E-53 score: 171.497
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 20..105 e-value: 1.9E-6 score: 29.6
IPR022666	Ribosomal Proteins L2, RNA binding domain	PFAM	PF00181	Ribosomal_L2	coord: 317..393 e-value: 2.4E-29 score: 101.1
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 286..400

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C11G216990.2	Cla97C11G216990.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006412	translation
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0008270	zinc ion binding