Cla97C11G215110 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C11G215110
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (Ferredoxin), chloroplastic
Location	Cla97Chr11: 11221871 .. 11222279 (+)
RNA-Seq Expression	Cla97C11G215110
Synteny	Cla97C11G215110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAGACATAAGTATGGGTGTTATAACACCTTTATTAGAGAAACTTACAAAGCCCTTACCTAATGCCATGGTTCTGGTCAATCTCAAGGAGTTATCCTCTAGTGCCCACAAACTTTTACCAGACGGTATGTTGAGCATACTTCCAATTCCTGCTCATTCACTCGATTTCAATTTCATTATTTATTTATTATGGTTAAATTCCTTGTCACCTCCCATATCAATGAATTGCCTCAGGCACACTCTTGGTTATATCGGTACGAGGTGATGAATCATACAATGATCTGGATATCTTGAAAGAGATTAATGCAACAATGCTTTTTCATGACTTACCATATTTAGAAGACAAGGTCAGCAGAGTGCATGTTGCAAGGAGGTATAACAAAATTCCTTTACGACTGATTTATTAA

mRNA sequence

ATGATAGACATAAGTATGGGTGTTATAACACCTTTATTAGAGAAACTTACAAAGCCCTTACCTAATGCCATGGTTCTGGTCAATCTCAAGGAGTTATCCTCTAGTGCCCACAAACTTTTACCAGACGGCACACTCTTGGTTATATCGGTACGAGGTGATGAATCATACAATGATCTGGATATCTTGAAAGAGATTAATGCAACAATGCTTTTTCATGACTTACCATATTTAGAAGACAAGGTCAGCAGAGTGCATGTTGCAAGGAGGTATAACAAAATTCCTTTACGACTGATTTATTAA

Coding sequence (CDS)

ATGATAGACATAAGTATGGGTGTTATAACACCTTTATTAGAGAAACTTACAAAGCCCTTACCTAATGCCATGGTTCTGGTCAATCTCAAGGAGTTATCCTCTAGTGCCCACAAACTTTTACCAGACGGCACACTCTTGGTTATATCGGTACGAGGTGATGAATCATACAATGATCTGGATATCTTGAAAGAGATTAATGCAACAATGCTTTTTCATGACTTACCATATTTAGAAGACAAGGTCAGCAGAGTGCATGTTGCAAGGAGGTATAACAAAATTCCTTTACGACTGATTTATTAA

Protein sequence

MIDISMGVITPLLEKLTKPLPNAMVLVNLKELSSSAHKLLPDGTLLVISVRGDESYNDLDILKEINATMLFHDLPYLEDKVSRVHVARRYNKIPLRLIY

Homology

[Close]

BLAST of Cla97C11G215110 vs. NCBI nr
Match: XP_008463938.1 (PREDICTED: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic [Cucumis melo] >XP_016903081.1 PREDICTED: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic [Cucumis melo] >XP_016903086.1 PREDICTED: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic [Cucumis melo] >KAA0056778.1 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [Cucumis melo var. makuwa] >TYJ97601.1 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [Cucumis melo var. makuwa])

HSP 1 Score: 155.6 bits (392), Expect = 2.2e-34
Identity = 79/89 (88.76%), Postives = 83/89 (93.26%), Query Frame = 0


Query: 1   MIDISMGVITPLLEKLTKPLPNAMVLVNLKELSSSAHKLLPDGTLLVISVRGDESYNDLD 60
           +IDISMGVITPL E+LTKPLPNAMVLVNLKELSS AHKLLPDGT LV+SVRGDESYNDLD
Sbjct: 473 LIDISMGVITPLSEQLTKPLPNAMVLVNLKELSSGAHKLLPDGTRLVVSVRGDESYNDLD 532

Query: 61  ILKEINATMLFHDLPYLEDKVSRVHVARR 90
           ILKE +ATMLFHDLPY EDKVSRVH ARR
Sbjct: 533 ILKETDATMLFHDLPYSEDKVSRVHAARR 561

[Close]

BLAST of Cla97C11G215110 vs. NCBI nr
Match: XP_038895330.1 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic [Benincasa hispida] >XP_038895331.1 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic [Benincasa hispida])

HSP 1 Score: 154.5 bits (389), Expect = 4.9e-34
Identity = 78/89 (87.64%), Postives = 84/89 (94.38%), Query Frame = 0


Query: 1   MIDISMGVITPLLEKLTKPLPNAMVLVNLKELSSSAHKLLPDGTLLVISVRGDESYNDLD 60
           +ID+SMGVITPL E+LTKPLPNAMVLVNLKELSS AHKLLPDGT LV+SVRGDESY+DLD
Sbjct: 473 LIDMSMGVITPLSEQLTKPLPNAMVLVNLKELSSGAHKLLPDGTRLVVSVRGDESYDDLD 532

Query: 61  ILKEINATMLFHDLPYLEDKVSRVHVARR 90
           ILKEI+ATMLFHDLPY EDKVSRVH ARR
Sbjct: 533 ILKEIDATMLFHDLPYSEDKVSRVHAARR 561

[Close]

BLAST of Cla97C11G215110 vs. NCBI nr
Match: XP_004148774.1 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic [Cucumis sativus] >XP_011653452.1 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic [Cucumis sativus] >KGN64731.1 hypothetical protein Csa_014075 [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 1.1e-33
Identity = 78/89 (87.64%), Postives = 83/89 (93.26%), Query Frame = 0


Query: 1   MIDISMGVITPLLEKLTKPLPNAMVLVNLKELSSSAHKLLPDGTLLVISVRGDESYNDLD 60
           +IDISMGVITPL E+LTKPLPNAMVLVNLKELSS A+KLLPDGT LV+SVRGDESYNDLD
Sbjct: 473 LIDISMGVITPLSEQLTKPLPNAMVLVNLKELSSGAYKLLPDGTRLVVSVRGDESYNDLD 532

Query: 61  ILKEINATMLFHDLPYLEDKVSRVHVARR 90
           ILKE +ATMLFHDLPY EDKVSRVH ARR
Sbjct: 533 ILKETDATMLFHDLPYSEDKVSRVHAARR 561

[Close]

BLAST of Cla97C11G215110 vs. NCBI nr
Match: AEM42998.1 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Siraitia grosvenorii])

HSP 1 Score: 152.5 bits (384), Expect = 1.9e-33
Identity = 77/89 (86.52%), Postives = 83/89 (93.26%), Query Frame = 0


Query: 1   MIDISMGVITPLLEKLTKPLPNAMVLVNLKELSSSAHKLLPDGTLLVISVRGDESYNDLD 60
           +IDISMGVITPL E+LTKPLPNAMVLVNLKELSS AHKLLPDGT LV+SVRGDESYNDL+
Sbjct: 472 LIDISMGVITPLSEQLTKPLPNAMVLVNLKELSSGAHKLLPDGTRLVVSVRGDESYNDLE 531

Query: 61  ILKEINATMLFHDLPYLEDKVSRVHVARR 90
           +LKEI+ATMLFHDL Y EDKVSRVH ARR
Sbjct: 532 VLKEIDATMLFHDLSYSEDKVSRVHAARR 560

[Close]

BLAST of Cla97C11G215110 vs. NCBI nr
Match: KAG7036879.1 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 151.0 bits (380), Expect = 5.5e-33
Identity = 76/89 (85.39%), Postives = 84/89 (94.38%), Query Frame = 0


Query: 1   MIDISMGVITPLLEKLTKPLPNAMVLVNLKELSSSAHKLLPDGTLLVISVRGDESYNDLD 60
           +IDIS+GVITPL E+LTKPLPNAMVLV+LKELSS AHKLLP+GT LV+SVRGDESYNDL+
Sbjct: 459 LIDISIGVITPLSEQLTKPLPNAMVLVSLKELSSGAHKLLPEGTRLVVSVRGDESYNDLE 518

Query: 61  ILKEINATMLFHDLPYLEDKVSRVHVARR 90
           ILKEI+ATMLFHDLPY EDKVSRVH ARR
Sbjct: 519 ILKEIDATMLFHDLPYSEDKVSRVHAARR 547

[Close]

BLAST of Cla97C11G215110 vs. ExPASy Swiss-Prot
Match: F4K0E8 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ISPG PE=1 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 9.0e-31
Identity = 65/89 (73.03%), Postives = 78/89 (87.64%), Query Frame = 0


Query: 1   MIDISMGVITPLLEKLTKPLPNAMVLVNLKELSSSAHKLLPDGTLLVISVRGDESYNDLD 60
           +ID+SMGVI PL E+LTKPLPNAMVLVNLKELS  A+KLLP+GT LV+S+RGDE Y +L+
Sbjct: 472 LIDVSMGVIAPLSEQLTKPLPNAMVLVNLKELSGGAYKLLPEGTRLVVSLRGDEPYEELE 531

Query: 61  ILKEINATMLFHDLPYLEDKVSRVHVARR 90
           ILK I+ATM+ HD+P+ EDKVSRVH ARR
Sbjct: 532 ILKNIDATMILHDVPFTEDKVSRVHAARR 560

[Close]

BLAST of Cla97C11G215110 vs. ExPASy Swiss-Prot
Match: Q6K8J4 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=ISPG PE=2 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.0e-25
Identity = 57/90 (63.33%), Postives = 73/90 (81.11%), Query Frame = 0


Query: 1   MIDISMGVITPLLEKLTKPLPNAMVLVNLKELSSSAHKLLPDGTLLVISVRGDESYNDLD 60
           ++DISMGV+TPL E+LTKPLP+A+ LVN+ ELSS AHKLLP+GT L +++RGDESY  LD
Sbjct: 475 LVDISMGVLTPLSEQLTKPLPHAIALVNVDELSSGAHKLLPEGTRLAVTLRGDESYEQLD 534

Query: 61  ILKEI-NATMLFHDLPYLEDKVSRVHVARR 90
           +LK + + TML H +PY E+K  RVH ARR
Sbjct: 535 LLKGVDDITMLLHSVPYGEEKTGRVHAARR 564

[Close]

BLAST of Cla97C11G215110 vs. ExPASy TrEMBL
Match: A0A1S4E4C1 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (Ferredoxin), chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501942 PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.1e-34
Identity = 79/89 (88.76%), Postives = 83/89 (93.26%), Query Frame = 0


Query: 1   MIDISMGVITPLLEKLTKPLPNAMVLVNLKELSSSAHKLLPDGTLLVISVRGDESYNDLD 60
           +IDISMGVITPL E+LTKPLPNAMVLVNLKELSS AHKLLPDGT LV+SVRGDESYNDLD
Sbjct: 473 LIDISMGVITPLSEQLTKPLPNAMVLVNLKELSSGAHKLLPDGTRLVVSVRGDESYNDLD 532

Query: 61  ILKEINATMLFHDLPYLEDKVSRVHVARR 90
           ILKE +ATMLFHDLPY EDKVSRVH ARR
Sbjct: 533 ILKETDATMLFHDLPYSEDKVSRVHAARR 561

[Close]

BLAST of Cla97C11G215110 vs. ExPASy TrEMBL
Match: A0A5D3BG37 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (Ferredoxin) OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold690G00320 PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.1e-34
Identity = 79/89 (88.76%), Postives = 83/89 (93.26%), Query Frame = 0


Query: 1   MIDISMGVITPLLEKLTKPLPNAMVLVNLKELSSSAHKLLPDGTLLVISVRGDESYNDLD 60
           +IDISMGVITPL E+LTKPLPNAMVLVNLKELSS AHKLLPDGT LV+SVRGDESYNDLD
Sbjct: 473 LIDISMGVITPLSEQLTKPLPNAMVLVNLKELSSGAHKLLPDGTRLVVSVRGDESYNDLD 532

Query: 61  ILKEINATMLFHDLPYLEDKVSRVHVARR 90
           ILKE +ATMLFHDLPY EDKVSRVH ARR
Sbjct: 533 ILKETDATMLFHDLPYSEDKVSRVHAARR 561

[Close]

BLAST of Cla97C11G215110 vs. ExPASy TrEMBL
Match: A0A0A0LXJ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G084300 PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 5.3e-34
Identity = 78/89 (87.64%), Postives = 83/89 (93.26%), Query Frame = 0


Query: 1   MIDISMGVITPLLEKLTKPLPNAMVLVNLKELSSSAHKLLPDGTLLVISVRGDESYNDLD 60
           +IDISMGVITPL E+LTKPLPNAMVLVNLKELSS A+KLLPDGT LV+SVRGDESYNDLD
Sbjct: 473 LIDISMGVITPLSEQLTKPLPNAMVLVNLKELSSGAYKLLPDGTRLVVSVRGDESYNDLD 532

Query: 61  ILKEINATMLFHDLPYLEDKVSRVHVARR 90
           ILKE +ATMLFHDLPY EDKVSRVH ARR
Sbjct: 533 ILKETDATMLFHDLPYSEDKVSRVHAARR 561

[Close]

BLAST of Cla97C11G215110 vs. ExPASy TrEMBL
Match: K7NBL1 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Siraitia grosvenorii OX=190515 GN=HDS PE=2 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 9.1e-34
Identity = 77/89 (86.52%), Postives = 83/89 (93.26%), Query Frame = 0


Query: 1   MIDISMGVITPLLEKLTKPLPNAMVLVNLKELSSSAHKLLPDGTLLVISVRGDESYNDLD 60
           +IDISMGVITPL E+LTKPLPNAMVLVNLKELSS AHKLLPDGT LV+SVRGDESYNDL+
Sbjct: 472 LIDISMGVITPLSEQLTKPLPNAMVLVNLKELSSGAHKLLPDGTRLVVSVRGDESYNDLE 531

Query: 61  ILKEINATMLFHDLPYLEDKVSRVHVARR 90
           +LKEI+ATMLFHDL Y EDKVSRVH ARR
Sbjct: 532 VLKEIDATMLFHDLSYSEDKVSRVHAARR 560

[Close]

BLAST of Cla97C11G215110 vs. ExPASy TrEMBL
Match: A0A6J1KDW7 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (Ferredoxin), chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111493449 PE=3 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.6e-33
Identity = 76/89 (85.39%), Postives = 84/89 (94.38%), Query Frame = 0


Query: 1   MIDISMGVITPLLEKLTKPLPNAMVLVNLKELSSSAHKLLPDGTLLVISVRGDESYNDLD 60
           +IDIS+GVITPL E+LTKPLPNAMVLV+LKELSS AHKLLP+GT LV+SVRGDESYNDL+
Sbjct: 473 LIDISIGVITPLSEQLTKPLPNAMVLVSLKELSSGAHKLLPEGTRLVVSVRGDESYNDLE 532

Query: 61  ILKEINATMLFHDLPYLEDKVSRVHVARR 90
           ILKEI+ATMLFHDLPY EDKVSRVH ARR
Sbjct: 533 ILKEIDATMLFHDLPYSEDKVSRVHAARR 561

[Close]

BLAST of Cla97C11G215110 vs. TAIR 10
Match: AT5G60600.1 (4-hydroxy-3-methylbut-2-enyl diphosphate synthase )

HSP 1 Score: 134.0 bits (336), Expect = 6.4e-32
Identity = 65/89 (73.03%), Postives = 78/89 (87.64%), Query Frame = 0


Query: 1   MIDISMGVITPLLEKLTKPLPNAMVLVNLKELSSSAHKLLPDGTLLVISVRGDESYNDLD 60
           +ID+SMGVI PL E+LTKPLPNAMVLVNLKELS  A+KLLP+GT LV+S+RGDE Y +L+
Sbjct: 472 LIDVSMGVIAPLSEQLTKPLPNAMVLVNLKELSGGAYKLLPEGTRLVVSLRGDEPYEELE 531

Query: 61  ILKEINATMLFHDLPYLEDKVSRVHVARR 90
           ILK I+ATM+ HD+P+ EDKVSRVH ARR
Sbjct: 532 ILKNIDATMILHDVPFTEDKVSRVHAARR 560

[Close]

BLAST of Cla97C11G215110 vs. TAIR 10
Match: AT5G60600.2 (4-hydroxy-3-methylbut-2-enyl diphosphate synthase )

HSP 1 Score: 134.0 bits (336), Expect = 6.4e-32
Identity = 65/89 (73.03%), Postives = 78/89 (87.64%), Query Frame = 0


Query: 1   MIDISMGVITPLLEKLTKPLPNAMVLVNLKELSSSAHKLLPDGTLLVISVRGDESYNDLD 60
           +ID+SMGVI PL E+LTKPLPNAMVLVNLKELS  A+KLLP+GT LV+S+RGDE Y +L+
Sbjct: 471 LIDVSMGVIAPLSEQLTKPLPNAMVLVNLKELSGGAYKLLPEGTRLVVSLRGDEPYEELE 530

Query: 61  ILKEINATMLFHDLPYLEDKVSRVHVARR 90
           ILK I+ATM+ HD+P+ EDKVSRVH ARR
Sbjct: 531 ILKNIDATMILHDVPFTEDKVSRVHAARR 559

[Close]

BLAST of Cla97C11G215110 vs. TAIR 10
Match: AT5G60600.3 (4-hydroxy-3-methylbut-2-enyl diphosphate synthase )

HSP 1 Score: 134.0 bits (336), Expect = 6.4e-32
Identity = 65/89 (73.03%), Postives = 78/89 (87.64%), Query Frame = 0


Query: 1   MIDISMGVITPLLEKLTKPLPNAMVLVNLKELSSSAHKLLPDGTLLVISVRGDESYNDLD 60
           +ID+SMGVI PL E+LTKPLPNAMVLVNLKELS  A+KLLP+GT LV+S+RGDE Y +L+
Sbjct: 472 LIDVSMGVIAPLSEQLTKPLPNAMVLVNLKELSGGAYKLLPEGTRLVVSLRGDEPYEELE 531

Query: 61  ILKEINATMLFHDLPYLEDKVSRVHVARR 90
           ILK I+ATM+ HD+P+ EDKVSRVH ARR
Sbjct: 532 ILKNIDATMILHDVPFTEDKVSRVHAARR 560

The following BLAST results are available for this feature:

BLAST of Cla97C11G215110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008463938.1	2.2e-34	88.76	PREDICTED: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), ch...	[more]
XP_038895330.1	4.9e-34	87.64	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic...	[more]
XP_004148774.1	1.1e-33	87.64	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic...	[more]
AEM42998.1	1.9e-33	86.52	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Siraitia grosvenorii]	[more]
KAG7036879.1	5.5e-33	85.39	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic...	[more]

BLAST of Cla97C11G215110 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4K0E8	9.0e-31	73.03	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic...	[more]
Q6K8J4	2.0e-25	63.33	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic...	[more]

BLAST of Cla97C11G215110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E4C1	1.1e-34	88.76	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (Ferredoxin), chloroplastic...	[more]
A0A5D3BG37	1.1e-34	88.76	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (Ferredoxin) OS=Cucumis mel...	[more]
A0A0A0LXJ8	5.3e-34	87.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G084300 PE=3 SV=1	[more]
K7NBL1	9.1e-34	86.52	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Siraitia grosvenorii OX=...	[more]
A0A6J1KDW7	2.6e-33	85.39	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (Ferredoxin), chloroplastic...	[more]

BLAST of Cla97C11G215110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G60600.1	6.4e-32	73.03	4-hydroxy-3-methylbut-2-enyl diphosphate synthase	[more]
AT5G60600.2	6.4e-32	73.03	4-hydroxy-3-methylbut-2-enyl diphosphate synthase	[more]
AT5G60600.3	6.4e-32	73.03	4-hydroxy-3-methylbut-2-enyl diphosphate synthase	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C11G215110.1	Cla97C11G215110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0016114	terpenoid biosynthetic process
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0046429	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0005506	iron ion binding