Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTCCTCAATTGTCACACTGCTTAAAAATGAAAAACTAACCGGTGAAAACTACGTAACGTGGAAATCTAACCTGAATACGATTCTGTTTATAGATGATATATGGTTTGTCTTAACGGAGGAGTTTCCTCCTATCCCCTCTTGTAATGCATCCCAATCTGTTAGGGATGCACATGACCGTTGGACAAAGGCCAATGACAAGGCCCGAGTTTATATCTTGGCAAGTTTGTCTAACGTACTCAACAAGAAACATGAGGCCATGATGAATGCACGACAGATCATGGAGTCTCTCTAGGAAATGTTTGGACAACCGTCCTCACAGATCCAGCACGAGGCCCTCAAGTACGTTTATAATGCACGTATGAAGAAAGGCCAATCGGTGAGAGAACATGTTCTCAACTTGATGCTCCAATTCAACGTTGCTGAAATGAACAGCGCGGTCATTGACGAGTAG
mRNA sequence
ATGTCTTCCTCAATTGTCACACTGCTTAAAAATGAAAAACTAACCGGTGAAAACTACGTAACGTGGAAATCTAACCTGAATACGATTCTGTTTATAGATGATATATGGTTTGTCTTAACGGAGGAGTTTCCTCCTATCCCCTCTTGTAATGCATCCCAATCTGTTAGGGATGCACATGACCGTTGGACAAAGGCCAATGACAAGGCCCGAGTTTATATCTTGGCAAGTTTGTCTAACATCCAGCACGAGGCCCTCAAGTACGTTTATAATGCACGTATGAAGAAAGGCCAATCGGTGAGAGAACATGTTCTCAACTTGATGCTCCAATTCAACGTTGCTGAAATGAACAGCGCGGTCATTGACGAGTAG
Coding sequence (CDS)
ATGTCTTCCTCAATTGTCACACTGCTTAAAAATGAAAAACTAACCGGTGAAAACTACGTAACGTGGAAATCTAACCTGAATACGATTCTGTTTATAGATGATATATGGTTTGTCTTAACGGAGGAGTTTCCTCCTATCCCCTCTTGTAATGCATCCCAATCTGTTAGGGATGCACATGACCGTTGGACAAAGGCCAATGACAAGGCCCGAGTTTATATCTTGGCAAGTTTGTCTAACATCCAGCACGAGGCCCTCAAGTACGTTTATAATGCACGTATGAAGAAAGGCCAATCGGTGAGAGAACATGTTCTCAACTTGATGCTCCAATTCAACGTTGCTGAAATGAACAGCGCGGTCATTGACGAGTAG
Protein sequence
MSSSIVTLLKNEKLTGENYVTWKSNLNTILFIDDIWFVLTEEFPPIPSCNASQSVRDAHDRWTKANDKARVYILASLSNIQHEALKYVYNARMKKGQSVREHVLNLMLQFNVAEMNSAVIDE
Homology
BLAST of Cla97C11G215043 vs. NCBI nr
Match:
KAA0063887.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 162.2 bits (409), Expect = 2.9e-36
Identity = 86/151 (56.95%), Postives = 103/151 (68.21%), Query Frame = 0
Query: 1 MSSSIVTLLKNEKLTGENYVTWKSNLNTILFIDDIWFVLTEEFPPIPSCNASQSVRDAHD 60
MSSSI+ LLK ++LTGENY TWKS LN IL I D+ FVL EE PP P+ NASQSV+DA+D
Sbjct: 1 MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60
Query: 61 RWTKANDKARVYILASLSN-----------------------------IQHEALKYVYNA 120
WTKANDKA +Y+LASLS+ I+ EA+KYVYNA
Sbjct: 61 HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120
Query: 121 RMKKGQSVREHVLNLMLQFNVAEMNSAVIDE 123
RMK+GQSVREHVL +++ FNVAEMN A+ DE
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAEMNKAIFDE 151
BLAST of Cla97C11G215043 vs. NCBI nr
Match:
TYK15919.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 162.2 bits (409), Expect = 2.9e-36
Identity = 86/151 (56.95%), Postives = 103/151 (68.21%), Query Frame = 0
Query: 1 MSSSIVTLLKNEKLTGENYVTWKSNLNTILFIDDIWFVLTEEFPPIPSCNASQSVRDAHD 60
MSSSI+ LLK ++LTGENY TWKS LN IL I D+ FVL EE PP P+ NASQSV+DA+D
Sbjct: 1 MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60
Query: 61 RWTKANDKARVYILASLSN-----------------------------IQHEALKYVYNA 120
WTKANDKA +Y+LASLS+ I+ EA+KYVYNA
Sbjct: 61 HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120
Query: 121 RMKKGQSVREHVLNLMLQFNVAEMNSAVIDE 123
RMK+GQSVREHVL +++ FNVAEMN A+ DE
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAEMNKAIFDE 151
BLAST of Cla97C11G215043 vs. NCBI nr
Match:
KAA0026242.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK30712.1 gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 160.2 bits (404), Expect = 1.1e-35
Identity = 85/144 (59.03%), Postives = 100/144 (69.44%), Query Frame = 0
Query: 1 MSSSIVTLLKNEKLTGENYVTWKSNLNTILFIDDIWFVLTEEFPPIPSCNASQSVRDAHD 60
MSSSI+ LLK ++LTGENY WKS LN IL I D+ FVL EE PP + NASQSVRDA+D
Sbjct: 1 MSSSIIALLKKDQLTGENYAMWKSKLNMILVIADLRFVLIEECPPFSTKNASQSVRDAYD 60
Query: 61 RWTKANDKARVYILASLS----------------------NIQHEALKYVYNARMKKGQS 120
RWTKANDKAR+YILAS+S I+ EA+KYVYNARMK+G
Sbjct: 61 RWTKANDKARLYILASMSGILSKKHEIMDSLREMFGQPSIQIKQEAIKYVYNARMKEGHF 120
Query: 121 VREHVLNLMLQFNVAEMNSAVIDE 123
VREHVLN+++ FNV +MN AV DE
Sbjct: 121 VREHVLNMIVNFNVEQMNGAVFDE 144
BLAST of Cla97C11G215043 vs. NCBI nr
Match:
XP_022158568.1 (uncharacterized protein LOC111025021 [Momordica charantia])
HSP 1 Score: 157.5 bits (397), Expect = 7.2e-35
Identity = 81/151 (53.64%), Postives = 103/151 (68.21%), Query Frame = 0
Query: 1 MSSSIVTLLKNEKLTGENYVTWKSNLNTILFIDDIWFVLTEEFPPIPSCNASQSVRDAHD 60
MS+S + LL ++KL G+NY WKSNLNTIL IDD+ FVLTEE PP P+ NA+++VRDA+D
Sbjct: 7 MSTSTIQLLASDKLNGDNYGIWKSNLNTILVIDDLRFVLTEECPPAPAPNANRTVRDAYD 66
Query: 61 RWTKANDKARVYILASLSNI-----------------------------QHEALKYVYNA 120
RW KAN+KARVYILAS+S + H+A+KYVYN
Sbjct: 67 RWVKANEKARVYILASISEVLSKKHERLATTREIMDSLQALFGQPSTTLMHDAVKYVYNC 126
Query: 121 RMKKGQSVREHVLNLMLQFNVAEMNSAVIDE 123
RMK+G SVREHVLN+M+ FNVAE+N V++E
Sbjct: 127 RMKEGSSVREHVLNMMVHFNVAEVNDTVMNE 157
BLAST of Cla97C11G215043 vs. NCBI nr
Match:
XP_022158791.1 (uncharacterized protein LOC111025258 [Momordica charantia])
HSP 1 Score: 157.1 bits (396), Expect = 9.4e-35
Identity = 83/151 (54.97%), Postives = 104/151 (68.87%), Query Frame = 0
Query: 1 MSSSIVTLLKNEKLTGENYVTWKSNLNTILFIDDIWFVLTEEFPPIPSCNASQSVRDAHD 60
MS+S + LL ++KL G+NY WKSNLNTIL IDD+ FVLTEE PP + N++Q+VRDAHD
Sbjct: 1 MSTSTIQLLASDKLNGDNYGIWKSNLNTILVIDDLRFVLTEECPPALAPNSNQTVRDAHD 60
Query: 61 RWTKANDKARVYILASLS-----------------------------NIQHEALKYVYNA 120
RW KAN+KARVYILAS+S +I H+A+KYVYN
Sbjct: 61 RWFKANEKARVYILASISDVLSKKHEGLATAREIMDSLQALFGQPSTSIIHDAIKYVYNC 120
Query: 121 RMKKGQSVREHVLNLMLQFNVAEMNSAVIDE 123
RMK+G SVREHVLN+M+ FNVAE+N AV++E
Sbjct: 121 RMKEGSSVREHVLNMMVHFNVAEVNDAVMNE 151
BLAST of Cla97C11G215043 vs. ExPASy TrEMBL
Match:
A0A5D3D0D9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00210 PE=4 SV=1)
HSP 1 Score: 162.2 bits (409), Expect = 1.4e-36
Identity = 86/151 (56.95%), Postives = 103/151 (68.21%), Query Frame = 0
Query: 1 MSSSIVTLLKNEKLTGENYVTWKSNLNTILFIDDIWFVLTEEFPPIPSCNASQSVRDAHD 60
MSSSI+ LLK ++LTGENY TWKS LN IL I D+ FVL EE PP P+ NASQSV+DA+D
Sbjct: 1 MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60
Query: 61 RWTKANDKARVYILASLSN-----------------------------IQHEALKYVYNA 120
WTKANDKA +Y+LASLS+ I+ EA+KYVYNA
Sbjct: 61 HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120
Query: 121 RMKKGQSVREHVLNLMLQFNVAEMNSAVIDE 123
RMK+GQSVREHVL +++ FNVAEMN A+ DE
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAEMNKAIFDE 151
BLAST of Cla97C11G215043 vs. ExPASy TrEMBL
Match:
A0A5A7VA67 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G00110 PE=4 SV=1)
HSP 1 Score: 162.2 bits (409), Expect = 1.4e-36
Identity = 86/151 (56.95%), Postives = 103/151 (68.21%), Query Frame = 0
Query: 1 MSSSIVTLLKNEKLTGENYVTWKSNLNTILFIDDIWFVLTEEFPPIPSCNASQSVRDAHD 60
MSSSI+ LLK ++LTGENY TWKS LN IL I D+ FVL EE PP P+ NASQSV+DA+D
Sbjct: 1 MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60
Query: 61 RWTKANDKARVYILASLSN-----------------------------IQHEALKYVYNA 120
WTKANDKA +Y+LASLS+ I+ EA+KYVYNA
Sbjct: 61 HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120
Query: 121 RMKKGQSVREHVLNLMLQFNVAEMNSAVIDE 123
RMK+GQSVREHVL +++ FNVAEMN A+ DE
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAEMNKAIFDE 151
BLAST of Cla97C11G215043 vs. ExPASy TrEMBL
Match:
A0A5A7SM77 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G00390 PE=4 SV=1)
HSP 1 Score: 160.2 bits (404), Expect = 5.4e-36
Identity = 85/144 (59.03%), Postives = 100/144 (69.44%), Query Frame = 0
Query: 1 MSSSIVTLLKNEKLTGENYVTWKSNLNTILFIDDIWFVLTEEFPPIPSCNASQSVRDAHD 60
MSSSI+ LLK ++LTGENY WKS LN IL I D+ FVL EE PP + NASQSVRDA+D
Sbjct: 1 MSSSIIALLKKDQLTGENYAMWKSKLNMILVIADLRFVLIEECPPFSTKNASQSVRDAYD 60
Query: 61 RWTKANDKARVYILASLS----------------------NIQHEALKYVYNARMKKGQS 120
RWTKANDKAR+YILAS+S I+ EA+KYVYNARMK+G
Sbjct: 61 RWTKANDKARLYILASMSGILSKKHEIMDSLREMFGQPSIQIKQEAIKYVYNARMKEGHF 120
Query: 121 VREHVLNLMLQFNVAEMNSAVIDE 123
VREHVLN+++ FNV +MN AV DE
Sbjct: 121 VREHVLNMIVNFNVEQMNGAVFDE 144
BLAST of Cla97C11G215043 vs. ExPASy TrEMBL
Match:
A0A6J1DWG6 (uncharacterized protein LOC111025021 OS=Momordica charantia OX=3673 GN=LOC111025021 PE=4 SV=1)
HSP 1 Score: 157.5 bits (397), Expect = 3.5e-35
Identity = 81/151 (53.64%), Postives = 103/151 (68.21%), Query Frame = 0
Query: 1 MSSSIVTLLKNEKLTGENYVTWKSNLNTILFIDDIWFVLTEEFPPIPSCNASQSVRDAHD 60
MS+S + LL ++KL G+NY WKSNLNTIL IDD+ FVLTEE PP P+ NA+++VRDA+D
Sbjct: 7 MSTSTIQLLASDKLNGDNYGIWKSNLNTILVIDDLRFVLTEECPPAPAPNANRTVRDAYD 66
Query: 61 RWTKANDKARVYILASLSNI-----------------------------QHEALKYVYNA 120
RW KAN+KARVYILAS+S + H+A+KYVYN
Sbjct: 67 RWVKANEKARVYILASISEVLSKKHERLATTREIMDSLQALFGQPSTTLMHDAVKYVYNC 126
Query: 121 RMKKGQSVREHVLNLMLQFNVAEMNSAVIDE 123
RMK+G SVREHVLN+M+ FNVAE+N V++E
Sbjct: 127 RMKEGSSVREHVLNMMVHFNVAEVNDTVMNE 157
BLAST of Cla97C11G215043 vs. ExPASy TrEMBL
Match:
A0A5D3DIM3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1359G00090 PE=4 SV=1)
HSP 1 Score: 157.1 bits (396), Expect = 4.5e-35
Identity = 85/151 (56.29%), Postives = 101/151 (66.89%), Query Frame = 0
Query: 1 MSSSIVTLLKNEKLTGENYVTWKSNLNTILFIDDIWFVLTEEFPPIPSCNASQSVRDAHD 60
MSSSI+ LLK ++LTGENY TWK LN IL I D+ FVL EE PP PS NASQSV+D +D
Sbjct: 1 MSSSIIALLKKDQLTGENYATWKLKLNMILVITDLRFVLIEECPPFPSQNASQSVKDGYD 60
Query: 61 RWTKANDKARVYILASLSN-----------------------------IQHEALKYVYNA 120
WTKANDKAR+YILAS+SN I+ EA+KYVYNA
Sbjct: 61 CWTKANDKARLYILASMSNILSKKHGIMVTARQIMKSLKEMFGQSSIQIKQEAIKYVYNA 120
Query: 121 RMKKGQSVREHVLNLMLQFNVAEMNSAVIDE 123
RMK+GQ VRE VLN+++ FN+A+MN AV DE
Sbjct: 121 RMKEGQYVRELVLNMIVNFNLAQMNEAVFDE 151
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0063887.1 | 2.9e-36 | 56.95 | gag/pol protein [Cucumis melo var. makuwa] | [more] |
TYK15919.1 | 2.9e-36 | 56.95 | gag/pol protein [Cucumis melo var. makuwa] | [more] |
KAA0026242.1 | 1.1e-35 | 59.03 | gag/pol protein [Cucumis melo var. makuwa] >TYK30712.1 gag/pol protein [Cucumis ... | [more] |
XP_022158568.1 | 7.2e-35 | 53.64 | uncharacterized protein LOC111025021 [Momordica charantia] | [more] |
XP_022158791.1 | 9.4e-35 | 54.97 | uncharacterized protein LOC111025258 [Momordica charantia] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3D0D9 | 1.4e-36 | 56.95 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00210... | [more] |
A0A5A7VA67 | 1.4e-36 | 56.95 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G0011... | [more] |
A0A5A7SM77 | 5.4e-36 | 59.03 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G0039... | [more] |
A0A6J1DWG6 | 3.5e-35 | 53.64 | uncharacterized protein LOC111025021 OS=Momordica charantia OX=3673 GN=LOC111025... | [more] |
A0A5D3DIM3 | 4.5e-35 | 56.29 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1359G000... | [more] |
Match Name | E-value | Identity | Description | |