Cla97C11G214635 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C11G214635
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	Reverse transcriptase
Location	Cla97Chr11: 8177668 .. 8178885 (+)
RNA-Seq Expression	Cla97C11G214635
Synteny	Cla97C11G214635

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAGTATAGAGATTGTTGGGAGATTGTTGGATAGATGTCTCACTGGCTTTAGTGCAAGCCGGAGATTGTTGGAATTTGTGGTCTAAAACCTCGTAATTGATTAGTCAATTAATTCAATTATTAGTTATGCAATATTAATTTATCCATTAATGGAAAAATCCAAGTTTATTGCATGAAATCTTGAACATGTATGTAATTGACATATAAGTGGATCATGTTCAAGAAATAACCTAAAGGTTTATACTATAGATATGGATAAGGTTGGGTGCTTTATCCCGGTGACACTATGGATACGACCAGTATGTAATAGTTACAAATGGTTTGATCCAAACTGTACACCTCCTCTCAAATTCCCTTTTAACCTGAGAGAGGGGACATGAATACATGTTAAACTTGTTACCTATCAAATAACCATCCATACATTCATGTAACCCTATTCATCTAGAGTACCTGATAGACAGTTTATAACATTCCTCACACAAATTAACACAACCATAGCTCGTTTACACTCTAAACATATCAACATTACTTCACAGTACTTACACCAGAGTATCATGTACATAAATAGAGTCCACAATGTTTCCTACAAAACATTACCCACCCTACTACATGCTATATACATGATGTTTCCACTATTATGATGTTTCTACTACTAACAAAGTAGAAGCTTGGGGTATGAGTCTACAGCTAGTTCTATAAGGATGCTACATGTGGTAAACAACACTGGGGGTAGCGCTTTAGTGGATCTAATGTCTGCTACAACTGTGGGCAGACAAGACATTTCAGGAGAGAGTGTCCTCAGTTGATAGATGAGGACAAGGCAGAGTAGAGAGTAGTATTTCAGACAATGAGCCAAGTGAAGCTTGGAGGAATCAGTGGTGAAGGCACTAGTGGTGCTACGCTTAGAGGGTTAGGAAGACCAAAGCAGCAGAGTAAAGTATATGTTATGACTCAGAAGGAGGCAGAGGATGCTCCTGATGTTATCACGAGTACGATATTTATATGTGTTATGCCTATTCAAGTATTGATAGATCTAGGGGGTACGATATTTATATGTGGATAAGTGTTTGATCTATCATAGGAATGCAAATGAGGCTGGTGGGATGGAAAATCACGCCCATGGGCATGCTGAGGGCGTGGGGCGCCCAGGATGGGCAACAACTCATGCCTATGGGCGTGTCAGCTGGGTGGTGTGGGGTGGCAGTAGTTCTTGA

mRNA sequence

ATGTTGAGTATAGAGATTGTTGGGAGATTGTTGGATAGATGTCTCACTGGCTTTAGTGCAAGCCGGAGATTTGGATCTAATGTCTGCTACAACTGTGGGCAGACAAGACATTTCAGGAGAGAGTGTCCTCAGTTGATAGATGAGGACAAGGCAGATGGTGAAGGCACTAGTGGTGCTACGCTTAGAGGGTTAGGAAGACCAAAGCAGCAGAGTAAAGTATATGTTATGACTCAGAAGGAGGCAGAGGATGCTCCTGATGTTATCACGAGTACGATATTTATATGTGTTATGCCTATTCAATGTTTGATCTATCATAGGAATGCAAATGAGGCTGGTGGGATGGAAAATCACGCCCATGGGCATGCTGAGGGCGTGGGGCGCCCAGGATGGGCAACAACTCATGCCTATGGGCGTGTCAGCTGGGTGGTGTGGGGTGGCAGTAGTTCTTGA

Coding sequence (CDS)

ATGTTGAGTATAGAGATTGTTGGGAGATTGTTGGATAGATGTCTCACTGGCTTTAGTGCAAGCCGGAGATTTGGATCTAATGTCTGCTACAACTGTGGGCAGACAAGACATTTCAGGAGAGAGTGTCCTCAGTTGATAGATGAGGACAAGGCAGATGGTGAAGGCACTAGTGGTGCTACGCTTAGAGGGTTAGGAAGACCAAAGCAGCAGAGTAAAGTATATGTTATGACTCAGAAGGAGGCAGAGGATGCTCCTGATGTTATCACGAGTACGATATTTATATGTGTTATGCCTATTCAATGTTTGATCTATCATAGGAATGCAAATGAGGCTGGTGGGATGGAAAATCACGCCCATGGGCATGCTGAGGGCGTGGGGCGCCCAGGATGGGCAACAACTCATGCCTATGGGCGTGTCAGCTGGGTGGTGTGGGGTGGCAGTAGTTCTTGA

Protein sequence

MLSIEIVGRLLDRCLTGFSASRRFGSNVCYNCGQTRHFRRECPQLIDEDKADGEGTSGATLRGLGRPKQQSKVYVMTQKEAEDAPDVITSTIFICVMPIQCLIYHRNANEAGGMENHAHGHAEGVGRPGWATTHAYGRVSWVVWGGSSS

Homology

[Close]

BLAST of Cla97C11G214635 vs. NCBI nr
Match: KAA0037581.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 9.1e-16
Identity = 49/97 (50.52%), Postives = 64/97 (65.98%), Query Frame = 0


Query: 25  GSNVCYNCGQTRHFRRECPQL--------------IDEDK---ADGEGTSGATLRG-LGR 84
           G+ VCY CG+T HF+R+CPQL              +++ +   A GE TSGA  +G +GR
Sbjct: 552 GAGVCYQCGKTGHFKRDCPQLRVVVRRDQGVESHTVEQSRISTAAGEETSGARQKGVVGR 611

Query: 85  PKQQSKVYVMTQKEAEDAPDVITSTIFICVMPIQCLI 104
           P+QQ KVY MTQ+EAEDAPDVIT TI IC +P + L+
Sbjct: 612 PRQQGKVYAMTQQEAEDAPDVITETILICNVPTRVLL 648

[Close]

BLAST of Cla97C11G214635 vs. NCBI nr
Match: TYK03091.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 9.1e-16
Identity = 49/97 (50.52%), Postives = 64/97 (65.98%), Query Frame = 0


Query: 25  GSNVCYNCGQTRHFRRECPQL--------------IDEDK---ADGEGTSGATLRG-LGR 84
           G+ VCY CG+T HF+R+CPQL              +++ +   A GE TSGA  +G +GR
Sbjct: 552 GAGVCYQCGKTGHFKRDCPQLRVVVRRDQGVESHTVEQSRISTAAGEETSGARQKGVVGR 611

Query: 85  PKQQSKVYVMTQKEAEDAPDVITSTIFICVMPIQCLI 104
           P+QQ KVY MTQ+EAEDAPDVIT TI IC +P + L+
Sbjct: 612 PRQQGKVYAMTQQEAEDAPDVITETILICNVPTRVLL 648

[Close]

BLAST of Cla97C11G214635 vs. NCBI nr
Match: KAA0062270.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-15
Identity = 49/96 (51.04%), Postives = 60/96 (62.50%), Query Frame = 0


Query: 25  GSNVCYNCGQTRHFRRECPQL---IDEDKADG--------------EGTSGATLRG-LGR 84
           G+ VCY CGQ RHF+++CPQL   +  D+  G              EGTSGA  +G +GR
Sbjct: 276 GTGVCYQCGQPRHFKKDCPQLNMTVQRDQGVGSQTVEQSRVSVVPTEGTSGARQKGVVGR 335

Query: 85  PKQQSKVYVMTQKEAEDAPDVITSTIFICVMPIQCL 103
           P+QQ KVY MTQ+EAED PDVIT TI IC +P   L
Sbjct: 336 PRQQEKVYAMTQQEAEDTPDVITGTILICNVPADVL 371

[Close]

BLAST of Cla97C11G214635 vs. NCBI nr
Match: KAA0033478.1 (retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa])

HSP 1 Score: 93.6 bits (231), Expect = 1.6e-15
Identity = 49/96 (51.04%), Postives = 61/96 (63.54%), Query Frame = 0


Query: 25  GSNVCYNCGQTRHFRRECPQL---IDEDKADG--------------EGTSGATLRG-LGR 84
           G  VCY CGQ RHF+++CPQL   ++ D+  G              EGTSGA  +G +GR
Sbjct: 182 GVGVCYQCGQPRHFKKDCPQLNMKVERDQGVGSQTVEESRVSVVPTEGTSGARQKGVVGR 241

Query: 85  PKQQSKVYVMTQKEAEDAPDVITSTIFICVMPIQCL 103
           P+QQ KVY MTQ+EA+DAPDVIT TI IC +P   L
Sbjct: 242 PRQQGKVYAMTQQEAKDAPDVITGTILICNVPTDVL 277

[Close]

BLAST of Cla97C11G214635 vs. NCBI nr
Match: TYK22548.1 (retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa])

HSP 1 Score: 93.6 bits (231), Expect = 1.6e-15
Identity = 49/96 (51.04%), Postives = 61/96 (63.54%), Query Frame = 0


Query: 25  GSNVCYNCGQTRHFRRECPQL---IDEDKADG--------------EGTSGATLRG-LGR 84
           G  VCY CGQ RHF+++CPQL   ++ D+  G              EGTSGA  +G +GR
Sbjct: 182 GVGVCYQCGQPRHFKKDCPQLNMKVERDQGVGSQTVEESRVSVVPTEGTSGARQKGVVGR 241

Query: 85  PKQQSKVYVMTQKEAEDAPDVITSTIFICVMPIQCL 103
           P+QQ KVY MTQ+EA+DAPDVIT TI IC +P   L
Sbjct: 242 PRQQGKVYAMTQQEAKDAPDVITGTILICNVPTDVL 277

[Close]

BLAST of Cla97C11G214635 vs. ExPASy TrEMBL
Match: A0A5D3BTP3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00020 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 4.4e-16
Identity = 49/97 (50.52%), Postives = 64/97 (65.98%), Query Frame = 0


Query: 25  GSNVCYNCGQTRHFRRECPQL--------------IDEDK---ADGEGTSGATLRG-LGR 84
           G+ VCY CG+T HF+R+CPQL              +++ +   A GE TSGA  +G +GR
Sbjct: 552 GAGVCYQCGKTGHFKRDCPQLRVVVRRDQGVESHTVEQSRISTAAGEETSGARQKGVVGR 611

Query: 85  PKQQSKVYVMTQKEAEDAPDVITSTIFICVMPIQCLI 104
           P+QQ KVY MTQ+EAEDAPDVIT TI IC +P + L+
Sbjct: 612 PRQQGKVYAMTQQEAEDAPDVITETILICNVPTRVLL 648

[Close]

BLAST of Cla97C11G214635 vs. ExPASy TrEMBL
Match: A0A5A7T7M6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002250 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 4.4e-16
Identity = 49/97 (50.52%), Postives = 64/97 (65.98%), Query Frame = 0


Query: 25  GSNVCYNCGQTRHFRRECPQL--------------IDEDK---ADGEGTSGATLRG-LGR 84
           G+ VCY CG+T HF+R+CPQL              +++ +   A GE TSGA  +G +GR
Sbjct: 552 GAGVCYQCGKTGHFKRDCPQLRVVVRRDQGVESHTVEQSRISTAAGEETSGARQKGVVGR 611

Query: 85  PKQQSKVYVMTQKEAEDAPDVITSTIFICVMPIQCLI 104
           P+QQ KVY MTQ+EAEDAPDVIT TI IC +P + L+
Sbjct: 612 PRQQGKVYAMTQQEAEDAPDVITETILICNVPTRVLL 648

[Close]

BLAST of Cla97C11G214635 vs. ExPASy TrEMBL
Match: A0A5A7V4W9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold679G00400 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 5.8e-16
Identity = 49/96 (51.04%), Postives = 60/96 (62.50%), Query Frame = 0


Query: 25  GSNVCYNCGQTRHFRRECPQL---IDEDKADG--------------EGTSGATLRG-LGR 84
           G+ VCY CGQ RHF+++CPQL   +  D+  G              EGTSGA  +G +GR
Sbjct: 276 GTGVCYQCGQPRHFKKDCPQLNMTVQRDQGVGSQTVEQSRVSVVPTEGTSGARQKGVVGR 335

Query: 85  PKQQSKVYVMTQKEAEDAPDVITSTIFICVMPIQCL 103
           P+QQ KVY MTQ+EAED PDVIT TI IC +P   L
Sbjct: 336 PRQQEKVYAMTQQEAEDTPDVITGTILICNVPADVL 371

[Close]

BLAST of Cla97C11G214635 vs. ExPASy TrEMBL
Match: A0A5A7SSD5 (Retrotransposon protein, putative, Ty3-gypsy subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G00080 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 7.5e-16
Identity = 49/96 (51.04%), Postives = 61/96 (63.54%), Query Frame = 0


Query: 25  GSNVCYNCGQTRHFRRECPQL---IDEDKADG--------------EGTSGATLRG-LGR 84
           G  VCY CGQ RHF+++CPQL   ++ D+  G              EGTSGA  +G +GR
Sbjct: 182 GVGVCYQCGQPRHFKKDCPQLNMKVERDQGVGSQTVEESRVSVVPTEGTSGARQKGVVGR 241

Query: 85  PKQQSKVYVMTQKEAEDAPDVITSTIFICVMPIQCL 103
           P+QQ KVY MTQ+EA+DAPDVIT TI IC +P   L
Sbjct: 242 PRQQGKVYAMTQQEAKDAPDVITGTILICNVPTDVL 277

[Close]

BLAST of Cla97C11G214635 vs. ExPASy TrEMBL
Match: A0A5D3DGG2 (Retrotransposon protein, putative, Ty3-gypsy subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold7461G00030 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 7.5e-16
Identity = 49/96 (51.04%), Postives = 61/96 (63.54%), Query Frame = 0


Query: 25  GSNVCYNCGQTRHFRRECPQL---IDEDKADG--------------EGTSGATLRG-LGR 84
           G  VCY CGQ RHF+++CPQL   ++ D+  G              EGTSGA  +G +GR
Sbjct: 182 GVGVCYQCGQPRHFKKDCPQLNMKVERDQGVGSQTVEESRVSVVPTEGTSGARQKGVVGR 241

Query: 85  PKQQSKVYVMTQKEAEDAPDVITSTIFICVMPIQCL 103
           P+QQ KVY MTQ+EA+DAPDVIT TI IC +P   L
Sbjct: 242 PRQQGKVYAMTQQEAKDAPDVITGTILICNVPTDVL 277

The following BLAST results are available for this feature:

BLAST of Cla97C11G214635 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0037581.1	9.1e-16	50.52	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK03091.1	9.1e-16	50.52	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0062270.1	1.2e-15	51.04	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0033478.1	1.6e-15	51.04	retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]	[more]
TYK22548.1	1.6e-15	51.04	retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]	[more]

BLAST of Cla97C11G214635 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cla97C11G214635 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BTP3	4.4e-16	50.52	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37...	[more]
A0A5A7T7M6	4.4e-16	50.52	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27...	[more]
A0A5A7V4W9	5.8e-16	51.04	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67...	[more]
A0A5A7SSD5	7.5e-16	51.04	Retrotransposon protein, putative, Ty3-gypsy subclass OS=Cucumis melo var. makuw...	[more]
A0A5D3DGG2	7.5e-16	51.04	Retrotransposon protein, putative, Ty3-gypsy subclass OS=Cucumis melo var. makuw...	[more]

BLAST of Cla97C11G214635 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 28..44 e-value: 3.5E-5 score: 33.2
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 27..44 e-value: 8.1E-6 score: 25.7
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 29..44 score: 10.147202
None	No IPR available	GENE3D	4.10.60.10		coord: 24..79 e-value: 2.4E-6 score: 29.8
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 16..47

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C11G214635.1	Cla97C11G214635.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0008270	zinc ion binding