Cla97C11G214417 (gene) Watermelon (97103) v2.5

Overview
NameCla97C11G214417
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionDNA-directed RNA polymerase subunit beta
LocationCla97Chr11: 7799756 .. 7803353 (+)
RNA-Seq ExpressionCla97C11G214417
SyntenyCla97C11G214417
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCATGGGAAGGTTACAATTCTGAAGATGCGGTACTAATTAGCGAGCGTTTGGTATATGAAGATATTTATACTTCTTTCCACATACGTAAATATGAAATTCAAACTCATGTGACAAGCCACGGACCTGAAAGAATCACTAACGAAATACCACATCTAGAAGCCCGCTTACTCCGTAATTTAGACAAAAATGGAATTGTGATGCTGGGATCGTGGGTGGAGACGGGCGATATTTTAGTAGGTAAATTAACGCCTCAGATGGCGAAAGAATCATCGTATGCCCCGGAAGATAGATTATTACGAGCCATACTTGGCATTCAGGTATCCACTTCAAAAGAAACCTGTCTAAAACTACCTATCGGCGGTAGGGGTCGAGTTATTGATGTGAGATGGATCCAGAAAAAAGGGGGTTCGAGTTATAATCCAGAAATGATTCGTGTATATATTTCACAGAAACGTGAAATCAAAGTAGGCGATAAGGTAGCGGGACGACATGGAAATAAAGGTATTGTTTCAAAAATTTTGCCTAGAGAAGATATGCCCCATTGTTCCCTGCTCTAACTCCTCCGATTTCCCTTTGCTTTCTTTATTACTTATCGCACGTGCCCAGTCTCAACGTCACTTCGGCTCGATCCCGGATCTGAAACGACGCTACGGGATATAATATATTAAACGACTACATCAATCCTAAGGATCCATAGGCTTAATTGCGGATCTAGCACAACAATAAAAATGTTTAAGTTGTTTCGTCTTAGATTTTGATTTCAATTTTGTATATCTAGCATTTATCAAATTTGAAAAAGGGTCAGAAGAAATGGTTCGATCCTCTTATTTTGATTTCTCGAACCGAGAGATCCATGAATCGGGATCCTAATGCATATAGATACAAATGGTCCAATGGGAGCAAGAATTTCCAGGAACATTTCATTTCTGAGCAGAAGAGCCATTTTCATTTTCAAGTAGTGTTCGATCGATTACGTATTAATCAATATTCGATTGATTGGTCTGAGGTTATCGATAAAAAAGATTTGTCTAAGTCACTTCGTTTCTTTTTGTCCAAGTTACTTGTTTTTTTGTCCAAGTTTCTTCTCTTTTTGTCTAACTCACTTCCTTTTTTCTTTGTGAGTTTCGGGAATATCCCCATTCATAGGTCCGAGATCCACATCTATGAATTGAAAGGTCCGAATGATCAACTCTGCAATCAGTTGTTAGAATCAATAGGTCTTCAAATCGTTCATTTGAAAAAATTGAAACCCTTCTTATTGGATGATCATGATACTTCCCAAAAATCGAAATTCTTGATCAATGGAGGAACAATATCACCATTTTTGTTCAATAAGATACCAAAGTGGATGATTGACTCATTCCATACTAGAAATAATCGCAGGAAATCCTTTGATAACACGGATTCCTATTTCTCAATGATATCCCACGATCAAGACAATTGGCTAAATCCCCCCCATCCCTACTTGACTAAGCTAAGGAACTACTGAAAATGGCACGAAATCACAGACGGAAGTAATCAATCACGCTACTCATACGGGAATATGAAAGCTACTAGGCCTGCTTAGGCCTGTTGATGGCGGATGGAAGTACCGAGGTGCGTTTGGATCAAAAGCCAATAGCTGAAGACAAGAGATTCATATGAGAAAACATAAGTAAACGCACCTCTGCTTGAGCCTCCAAAGATAAAGGTACATGAACAGCCATTTGATCCCCATCAAAGTCGGCATTGAATCCCTTACAAACTAATGGATGTAAACAAATAGCACGTCCTTCCACTAAAATAGGTTGGAAGGCTTGGATGCCTAATCTATGCAGAGTAGGCGCTCTATTTAGCAATATGGGATACCCCTGCATAACTTCCTGAAGTATTTCCCATACAATGGGTTCTTTTTCCCGAATTTTACTCTTAGCAACTCCTATGTTCGAAGCAAAATGTTGTCGAATTAGACCACGAATTAAAAATGTCTGGAAAAGCTCTATTGCGATTTCGCGAGGCAATCCACATCGATGTAATGAAAGTGAGGGACCTACAACAATCACAGAACGTCCTAAATAATCGACCCGTTTGCCAAGCAGAGTCTCCCGAAATCTTCCCTCTTTGCCTTCAATTACATCGGAAAACGACTTGTAAACCTTATTATGGCCATCCCTCATTGGTTGTCCGCGGATTCCATTATCAAGAAGTGTATCCACGGCTTCTTGTACCAATTTCTCCTGACACATTACTAATTCTCCTGGCGTAGATCTACTTGTTGTTAATAGATCAGTAAGAGTATTGTTCCGATAGATAACTCTTCTATAGAGTTCATTAATATCCGAGCTCATTAGTTTACCCCCATCTATCTGAATGATCGGTCTCAGCTCGGGAGGAAGAACAGGTAATAGACATAAAACCATCCATTCGGGTTCTATATTTGTTCGAATAAAATGCTTAGCTAATTCCATACGTCTAACCAAAAAATCCTTTCTTCTTCCAACTTTTCGATCTCTGAATAATCCACCTTTTGCGGGATTATTCCCGATATAATCATAAAAAGCTAATTTTTCAGGAATTTTAGACCAAGCTTCTGATAAACTTTGATTTTCGGCTAACCCGACACTAACTCGTCGATATATTTCTTGCTGGAAGTATCCCTGATCATATATATTTGTACGTTATTAGACAAAATATATTAGCTAACCAAAGAAATTTTTAATGGGTGTAGTTCCTATTAAGAAATTTCATTAAGGGCCTCTTGAATCAAAATAATTTGTTTTACAGTTCTATTTCTTTCAGAGGGCAATATGAATATTCTATTATGTTCTATCAACACACAAAAAGGGTTATACGATATATCTGGTGTGGAAGTCGGCCAACATTTGTATTGGCAAATAGGAGGTTTCCAAGTACATGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTTCTTTATCACTGAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCGACGATGAAGCTTATCCCCCATCGTCTCACTGGCCGACCTTGACCCCTCTTATTTTGAGATCATATCTAGTATTCAGAGTTTGCCTGGACACAGTGGGGAAGATAGTTTTGAGAAGGAGAAACGGCATGAGAAAGATGCGGTGGAGTTCGTCTCGGAATCAAGAAACCGAATAGGGTAGACATAAAAAGCTCTGCCCACGCCTGAAACAGAGGAAGAAGAAGAAGAGAGGCAGCTGACTTCTCGAAAAGAAAAAGGAGGATATGAAATAACCATAGTGGATGCAGCGAATGGGCGTCAAGTGGTTGATATTATCCCTCCAGGACCAGAACTTCTTGTTTCAGAGGGCGAATCTATCAAACTTGATCAACCATTAACGAGTAATCCTAATGTGGGAGGATTTGGTCAGGGTTCGAAACAAAAATCGAATGGACTTCTTCGCCTTCCTTCATGTCGTAGCCTTAGCTTATCGACGGGTCTTGCATTAGATACATACAGCATTTTCTTTGACTCATGCCTTGGAGAAGAACGTTCTTTGTTTGAGTTTGAAGTCGTTACCTTGCGGGAGCCACCTGGGCGAGACCCTTCTCTCCTTTTTTGA

mRNA sequence

ATGCCATGGGAAGGTTACAATTCTGAAGATGCGGTACTAATTAGCGAGCGTTTGGTATATGAAGATATTTATACTTCTTTCCACATACGTAAATATGAAATTCAAACTCATGTGACAAGCCACGGACCTGAAAGAATCACTAACGAAATACCACATCTAGAAGCCCGCTTACTCCGTAATTTAGACAAAAATGGAATTGTGATGCTGGGATCGTGGGTGGAGACGGGCGATATTTTAGTAGGTAAATTAACGCCTCAGATGGCGAAAGAATCATCGTATGCCCCGGAAGATAGATTATTACGAGCCATACTTGGCATTCAGGTATCCACTTCAAAAGAAACCTGTCTAAAACTACCTATCGGCGGTAGGGGTCGAGTTATTGATGTGAGATGGATCCAGAAAAAAGGGGGTTCGAGTTATAATCCAGAAATGATTCGTGTATATATTTCACAGAAACGTGAAATCAAAGTAGGCGATAAGGTAGCGGGACGACATGGAAATAAAGAGGAAGAAGAAGAAGAGAGGCAGCTGACTTCTCGAAAAGAAAAAGGAGGATATGAAATAACCATAGTGGATGCAGCGAATGGGCGTCAAGTGGTTGATATTATCCCTCCAGGACCAGAACTTCTTGTTTCAGAGGGCGAATCTATCAAACTTGATCAACCATTAACGAGTAATCCTAATGTGGGAGGATTTGGTCAGGGTTCGAAACAAAAATCGAATGGACTTCTTCGCCTTCCTTCATGTCGTAGCCTTAGCTTATCGACGGGTCTTGCATTAGATACATACAGCATTTTCTTTGACTCATGCCTTGGAGAAGAACGTTCTTTGTTTGAGTTTGAAGTCGTTACCTTGCGGGAGCCACCTGGGCGAGACCCTTCTCTCCTTTTTTGA

Coding sequence (CDS)

ATGCCATGGGAAGGTTACAATTCTGAAGATGCGGTACTAATTAGCGAGCGTTTGGTATATGAAGATATTTATACTTCTTTCCACATACGTAAATATGAAATTCAAACTCATGTGACAAGCCACGGACCTGAAAGAATCACTAACGAAATACCACATCTAGAAGCCCGCTTACTCCGTAATTTAGACAAAAATGGAATTGTGATGCTGGGATCGTGGGTGGAGACGGGCGATATTTTAGTAGGTAAATTAACGCCTCAGATGGCGAAAGAATCATCGTATGCCCCGGAAGATAGATTATTACGAGCCATACTTGGCATTCAGGTATCCACTTCAAAAGAAACCTGTCTAAAACTACCTATCGGCGGTAGGGGTCGAGTTATTGATGTGAGATGGATCCAGAAAAAAGGGGGTTCGAGTTATAATCCAGAAATGATTCGTGTATATATTTCACAGAAACGTGAAATCAAAGTAGGCGATAAGGTAGCGGGACGACATGGAAATAAAGAGGAAGAAGAAGAAGAGAGGCAGCTGACTTCTCGAAAAGAAAAAGGAGGATATGAAATAACCATAGTGGATGCAGCGAATGGGCGTCAAGTGGTTGATATTATCCCTCCAGGACCAGAACTTCTTGTTTCAGAGGGCGAATCTATCAAACTTGATCAACCATTAACGAGTAATCCTAATGTGGGAGGATTTGGTCAGGGTTCGAAACAAAAATCGAATGGACTTCTTCGCCTTCCTTCATGTCGTAGCCTTAGCTTATCGACGGGTCTTGCATTAGATACATACAGCATTTTCTTTGACTCATGCCTTGGAGAAGAACGTTCTTTGTTTGAGTTTGAAGTCGTTACCTTGCGGGAGCCACCTGGGCGAGACCCTTCTCTCCTTTTTTGA

Protein sequence

MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLRNLDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNKEEEEEERQLTSRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGSKQKSNGLLRLPSCRSLSLSTGLALDTYSIFFDSCLGEERSLFEFEVVTLREPPGRDPSLLF
Homology
[Close]
BLAST of Cla97C11G214417 vs. NCBI nr
Match: AHM89856.1 (RNA polymerase beta subunit [Lagenaria siceraria])

HSP 1 Score: 344.0 bits (881), Expect = 1.3e-90
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0 

Query: 1   MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLRN 60
           MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLRN
Sbjct: 660 MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLRN 719

Query: 61  LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 120
           LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI
Sbjct: 720 LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 779

Query: 121 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 169
           GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK
Sbjct: 780 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 827

[Close]
BLAST of Cla97C11G214417 vs. NCBI nr
Match: YP_009753166.1 (RNA polymerase subunit beta [Trichosanthes truncata] >QIT06238.1 RNA polymerase subunit beta [Trichosanthes truncata])

HSP 1 Score: 344.0 bits (881), Expect = 1.3e-90
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0 

Query: 1   MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLRN 60
           MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLRN
Sbjct: 660 MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLRN 719

Query: 61  LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 120
           LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI
Sbjct: 720 LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 779

Query: 121 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 169
           GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK
Sbjct: 780 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 827

[Close]
BLAST of Cla97C11G214417 vs. NCBI nr
Match: YP_009752827.1 (RNA polymerase subunit beta [Baijiania yunnanensis] >QIT05899.1 RNA polymerase subunit beta [Baijiania yunnanensis])

HSP 1 Score: 344.0 bits (881), Expect = 1.3e-90
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0 

Query: 1   MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLRN 60
           MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLRN
Sbjct: 660 MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLRN 719

Query: 61  LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 120
           LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI
Sbjct: 720 LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 779

Query: 121 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 169
           GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK
Sbjct: 780 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 827

[Close]
BLAST of Cla97C11G214417 vs. NCBI nr
Match: AHM88854.1 (RNA polymerase beta subunit, partial [Lagenaria siceraria])

HSP 1 Score: 344.0 bits (881), Expect = 1.3e-90
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0 

Query: 1   MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLRN 60
           MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLRN
Sbjct: 648 MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLRN 707

Query: 61  LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 120
           LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI
Sbjct: 708 LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 767

Query: 121 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 169
           GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK
Sbjct: 768 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 815

[Close]
BLAST of Cla97C11G214417 vs. NCBI nr
Match: YP_009753697.1 (RNA polymerase subunit beta [Trichosanthes nervifolia] >QIT05308.1 RNA polymerase subunit beta [Trichosanthes nervifolia])

HSP 1 Score: 344.0 bits (881), Expect = 1.3e-90
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0 

Query: 1   MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLRN 60
           MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLRN
Sbjct: 660 MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLRN 719

Query: 61  LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 120
           LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI
Sbjct: 720 LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 779

Query: 121 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 169
           GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK
Sbjct: 780 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 827

[Close]
BLAST of Cla97C11G214417 vs. ExPASy Swiss-Prot
Match: Q4VZP1 (DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=rpoB PE=3 SV=2)

HSP 1 Score: 336.7 bits (862), Expect = 2.8e-91
Identity = 164/168 (97.62%), Postives = 166/168 (98.81%), Query Frame = 0 

Query: 1   MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLRN 60
           MPWEGYN EDAVLISERL+YEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLL N
Sbjct: 660 MPWEGYNFEDAVLISERLIYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLCN 719

Query: 61  LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 120
           LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI
Sbjct: 720 LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 779

Query: 121 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 169
           GGRGRVIDVRWIQKKGGSSYNPE+IRVYISQKREIKVGDKVAGRHGNK
Sbjct: 780 GGRGRVIDVRWIQKKGGSSYNPEIIRVYISQKREIKVGDKVAGRHGNK 827

[Close]
BLAST of Cla97C11G214417 vs. ExPASy Swiss-Prot
Match: Q09X25 (DNA-directed RNA polymerase subunit beta OS=Morus indica OX=248361 GN=rpoB PE=3 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 1.8e-90
Identity = 162/168 (96.43%), Postives = 164/168 (97.62%), Query Frame = 0 

Query: 1   MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLRN 60
           MPWEGYNSEDAVLI+ERLVYEDIYTSFHIRKYEI THVTSHGPERITNEIPHLEA LLRN
Sbjct: 660 MPWEGYNSEDAVLINERLVYEDIYTSFHIRKYEIHTHVTSHGPERITNEIPHLEAHLLRN 719

Query: 61  LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 120
           LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQ+S SKETCLKLPI
Sbjct: 720 LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQISISKETCLKLPI 779

Query: 121 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 169
           GGRGRVIDVRWIQKKGGSSYNPE IRVYISQKREIKVGDKVAGRHGNK
Sbjct: 780 GGRGRVIDVRWIQKKGGSSYNPETIRVYISQKREIKVGDKVAGRHGNK 827

[Close]
BLAST of Cla97C11G214417 vs. ExPASy Swiss-Prot
Match: A0A327 (DNA-directed RNA polymerase subunit beta OS=Coffea arabica OX=13443 GN=rpoB PE=3 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 4.0e-90
Identity = 162/168 (96.43%), Postives = 164/168 (97.62%), Query Frame = 0 

Query: 1   MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLRN 60
           MPWEGYN EDAVLISERLVYEDIYTSFHIRKYEIQTHVTS GPER+TNEIPHLEA LLRN
Sbjct: 656 MPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSQGPERVTNEIPHLEAHLLRN 715

Query: 61  LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 120
           LDK+GIVMLGSWVETGDILVGKLTPQM KESSYAPEDRLLRAILGIQVSTSKETCLKLPI
Sbjct: 716 LDKSGIVMLGSWVETGDILVGKLTPQMVKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 775

Query: 121 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 169
           GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK
Sbjct: 776 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 823

[Close]
BLAST of Cla97C11G214417 vs. ExPASy Swiss-Prot
Match: A0ZZ27 (DNA-directed RNA polymerase subunit beta OS=Gossypium barbadense OX=3634 GN=rpoB PE=3 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 5.2e-90
Identity = 162/168 (96.43%), Postives = 164/168 (97.62%), Query Frame = 0 

Query: 1   MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLRN 60
           MPWEGYN EDAVLISERLVYEDIYTSFHIRKYEIQTHVTS GPERITNEIPHLEA LLRN
Sbjct: 660 MPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRN 719

Query: 61  LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 120
           LDKNGIVMLGSWVETGDILVGKLTPQ+AKESSYAPEDRLLRAILGIQVSTSKETCLKLPI
Sbjct: 720 LDKNGIVMLGSWVETGDILVGKLTPQVAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 779

Query: 121 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 169
           GGRGRVIDVRW+QKKGGSSYNPE IRVYISQKREIKVGDKVAGRHGNK
Sbjct: 780 GGRGRVIDVRWVQKKGGSSYNPETIRVYISQKREIKVGDKVAGRHGNK 827

[Close]
BLAST of Cla97C11G214417 vs. ExPASy Swiss-Prot
Match: Q2L8Z9 (DNA-directed RNA polymerase subunit beta OS=Gossypium hirsutum OX=3635 GN=rpoB PE=3 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 5.2e-90
Identity = 162/168 (96.43%), Postives = 164/168 (97.62%), Query Frame = 0 

Query: 1   MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLRN 60
           MPWEGYN EDAVLISERLVYEDIYTSFHIRKYEIQTHVTS GPERITNEIPHLEA LLRN
Sbjct: 660 MPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRN 719

Query: 61  LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 120
           LDKNGIVMLGSWVETGDILVGKLTPQ+AKESSYAPEDRLLRAILGIQVSTSKETCLKLPI
Sbjct: 720 LDKNGIVMLGSWVETGDILVGKLTPQVAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 779

Query: 121 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 169
           GGRGRVIDVRW+QKKGGSSYNPE IRVYISQKREIKVGDKVAGRHGNK
Sbjct: 780 GGRGRVIDVRWVQKKGGSSYNPETIRVYISQKREIKVGDKVAGRHGNK 827

[Close]
BLAST of Cla97C11G214417 vs. ExPASy TrEMBL
Match: A0A6H0ETN6 (DNA-directed RNA polymerase subunit beta OS=Trichosanthes kirilowii OX=3677 GN=rpoB PE=3 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 6.4e-91
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0 

Query: 1   MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLRN 60
           MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLRN
Sbjct: 660 MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLRN 719

Query: 61  LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 120
           LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI
Sbjct: 720 LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 779

Query: 121 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 169
           GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK
Sbjct: 780 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 827

[Close]
BLAST of Cla97C11G214417 vs. ExPASy TrEMBL
Match: A0A1P8LDX8 (DNA-directed RNA polymerase subunit beta OS=Citrullus mucosospermus OX=519315 GN=rpoB PE=3 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 6.4e-91
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0 

Query: 1   MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLRN 60
           MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLRN
Sbjct: 660 MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLRN 719

Query: 61  LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 120
           LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI
Sbjct: 720 LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 779

Query: 121 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 169
           GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK
Sbjct: 780 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 827

[Close]
BLAST of Cla97C11G214417 vs. ExPASy TrEMBL
Match: A0A6M3RVI4 (DNA-directed RNA polymerase subunit beta OS=Trichosanthes kirilowii var. japonica OX=61011 GN=rpoB PE=3 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 6.4e-91
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0 

Query: 1   MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLRN 60
           MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLRN
Sbjct: 660 MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLRN 719

Query: 61  LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 120
           LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI
Sbjct: 720 LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 779

Query: 121 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 169
           GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK
Sbjct: 780 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 827

[Close]
BLAST of Cla97C11G214417 vs. ExPASy TrEMBL
Match: A0A2Z2CGF9 (DNA-directed RNA polymerase subunit beta OS=Coccinia grandis OX=387127 GN=rpoB PE=3 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 6.4e-91
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0 

Query: 1   MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLRN 60
           MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLRN
Sbjct: 660 MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLRN 719

Query: 61  LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 120
           LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI
Sbjct: 720 LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 779

Query: 121 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 169
           GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK
Sbjct: 780 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 827

[Close]
BLAST of Cla97C11G214417 vs. ExPASy TrEMBL
Match: X2F5U4 (DNA-directed RNA polymerase subunit beta OS=Lagenaria siceraria OX=3668 GN=rpoB PE=3 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 6.4e-91
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0 

Query: 1   MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLRN 60
           MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLRN
Sbjct: 660 MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLRN 719

Query: 61  LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 120
           LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI
Sbjct: 720 LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 779

Query: 121 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 169
           GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK
Sbjct: 780 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 827

[Close]
BLAST of Cla97C11G214417 vs. TAIR 10
Match: ATCG00190.1 (RNA polymerase subunit beta )

HSP 1 Score: 324.3 bits (830), Expect = 1.0e-88
Identity = 158/168 (94.05%), Postives = 162/168 (96.43%), Query Frame = 0 

Query: 1   MPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNEIPHLEARLLRN 60
           MPWEGYN EDAVLISE LVY DIYTSFHIRKYEIQTHVT+ GPERIT EIPHLE RLLRN
Sbjct: 662 MPWEGYNFEDAVLISECLVYGDIYTSFHIRKYEIQTHVTTQGPERITKEIPHLEGRLLRN 721

Query: 61  LDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 120
           LDKNGIVMLGSWVETGDILVGKLTPQ+AKESSYAPEDRLLRAILGIQVSTSKETCLKLPI
Sbjct: 722 LDKNGIVMLGSWVETGDILVGKLTPQVAKESSYAPEDRLLRAILGIQVSTSKETCLKLPI 781

Query: 121 GGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNK 169
           GGRGRVIDVRW+QKKGGSSYNPE+IRVYISQKREIKVGDKVAGRHGNK
Sbjct: 782 GGRGRVIDVRWVQKKGGSSYNPEIIRVYISQKREIKVGDKVAGRHGNK 829

[Close]
BLAST of Cla97C11G214417 vs. TAIR 10
Match: ATCG00540.1 (photosynthetic electron transfer A )

HSP 1 Score: 105.5 bits (262), Expect = 7.3e-23
Identity = 51/59 (86.44%), Postives = 55/59 (93.22%), Query Frame = 0 

Query: 180 RKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGSKQ 239
           RKEKGGYEITIVDA+NGR+V+DIIP G ELLVSEGESIKLDQPLTSNPNVGGFGQG  +
Sbjct: 219 RKEKGGYEITIVDASNGREVIDIIPRGLELLVSEGESIKLDQPLTSNPNVGGFGQGDAE 277

The following BLAST results are available for this feature:
BLAST of Cla97C11G214417 vs. NCBI nr
Match NameE-valueIdentityDescription
AHM89856.11.3e-90100.00RNA polymerase beta subunit [Lagenaria siceraria][more]
YP_009753166.11.3e-90100.00RNA polymerase subunit beta [Trichosanthes truncata] >QIT06238.1 RNA polymerase ... [more]
YP_009752827.11.3e-90100.00RNA polymerase subunit beta [Baijiania yunnanensis] >QIT05899.1 RNA polymerase s... [more]
AHM88854.11.3e-90100.00RNA polymerase beta subunit, partial [Lagenaria siceraria][more]
YP_009753697.11.3e-90100.00RNA polymerase subunit beta [Trichosanthes nervifolia] >QIT05308.1 RNA polymeras... [more]
BLAST of Cla97C11G214417 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q4VZP12.8e-9197.62DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=rpoB PE=3... [more]
Q09X251.8e-9096.43DNA-directed RNA polymerase subunit beta OS=Morus indica OX=248361 GN=rpoB PE=3 ... [more]
A0A3274.0e-9096.43DNA-directed RNA polymerase subunit beta OS=Coffea arabica OX=13443 GN=rpoB PE=3... [more]
A0ZZ275.2e-9096.43DNA-directed RNA polymerase subunit beta OS=Gossypium barbadense OX=3634 GN=rpoB... [more]
Q2L8Z95.2e-9096.43DNA-directed RNA polymerase subunit beta OS=Gossypium hirsutum OX=3635 GN=rpoB P... [more]
BLAST of Cla97C11G214417 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6H0ETN66.4e-91100.00DNA-directed RNA polymerase subunit beta OS=Trichosanthes kirilowii OX=3677 GN=r... [more]
A0A1P8LDX86.4e-91100.00DNA-directed RNA polymerase subunit beta OS=Citrullus mucosospermus OX=519315 GN... [more]
A0A6M3RVI46.4e-91100.00DNA-directed RNA polymerase subunit beta OS=Trichosanthes kirilowii var. japonic... [more]
A0A2Z2CGF96.4e-91100.00DNA-directed RNA polymerase subunit beta OS=Coccinia grandis OX=387127 GN=rpoB P... [more]
X2F5U46.4e-91100.00DNA-directed RNA polymerase subunit beta OS=Lagenaria siceraria OX=3668 GN=rpoB ... [more]
BLAST of Cla97C11G214417 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00190.11.0e-8894.05RNA polymerase subunit beta [more]
ATCG00540.17.3e-2386.44photosynthetic electron transfer A [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002325Cytochrome fPRINTSPR00610CYTOCHROMEFcoord: 220..240
score: 66.67
coord: 199..219
score: 71.43
IPR002325Cytochrome fPFAMPF01333Apocytochr_F_Ccoord: 179..236
e-value: 4.8E-17
score: 62.1
IPR002325Cytochrome fPROSITEPS51010CYTFcoord: 180..238
score: 16.918091
NoneNo IPR availableGENE3D2.40.50.100coord: 176..225
e-value: 5.5E-20
score: 73.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 160..180
NoneNo IPR availablePANTHERPTHR20856:SF30DNA-DIRECTED RNA POLYMERASE SUBUNIT BETAcoord: 1..168
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 1..168
IPR007120DNA-directed RNA polymerase, subunit 2, hybrid-binding domainPFAMPF00562RNA_pol_Rpb2_6coord: 1..168
e-value: 4.1E-46
score: 157.8
IPR014724RNA polymerase Rpb2, OB-foldGENE3D2.40.50.150coord: 23..166
e-value: 1.9E-49
score: 169.8
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 1..168
IPR011054Rudiment single hybrid motifSUPERFAMILY51246Rudiment single hybrid motifcoord: 180..226

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C11G214417.1Cla97C11G214417.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0009507 chloroplast
cellular_component GO:0031361 integral component of thylakoid membrane
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0020037 heme binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0032549 ribonucleoside binding