Cla97C11G214387 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C11G214387
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	50S ribosomal protein L23, chloroplastic
Location	Cla97Chr11: 7777334 .. 7778153 (-)
RNA-Seq Expression	Cla97C11G214387
Synteny	Cla97C11G214387

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGGCCTTATTTCTAATTGAGAAGGGCTTCAATAAAAAGGAGATCGTGGGATCAAAGTGGACGTTCAAAATTTCCATGGCCGATTGCATCCCGAGGACTTTCTTGATTGAAAAAGTAGCGTGGCAAGGAAATGATTCAGTTCCAAAGCCAAAGATCGTAATTCTCGAACGAGCAATCGAAAAGATTCTGGAGTATCCTCAGGTTTCGGTATTGTTCCTCCAATGATTGTAGTACCAAGTACTTCTTGCCGAGCTCTAATATGATCAGATTTATAAGTAAGCACGGGCTCTTGCTGATACTACATCAGAGATTATTTTGTTGGGATGGTTACAACAAGATATGGGAGTCACTTTTTCTAGGCCTACTATTCTCATTTGTGACAACAAGAGTGCTATCCAAATAGCACACAATGTTGTGTTTCATGAGCGAACAAAACATATCGAAATAGCCAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCGGGAAAGGGTAGAAGAATGGGACCTATTATGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAACCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAAATCAAAATACTTAATAGCATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGTCAAGTAAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGAGAGGGGGTACATGTCAAGTATCCGCTTGGGATCATGTCTTCTTAG

mRNA sequence

ATGTGGGCCTTATTTCTAATTGAGAAGGGCTTCAATAAAAAGGAGATCGTGGGATCAAAGTGGACGTTCAAAATTTCCATGGCCGATTGCATCCCGAGGACTTTCTTGATTGAAAAAGTAGCGTGGCAAGGAAATGATTCAGTTCCAAAGCCAAAGATCGTAATTCTCGAACGAGCAATCGAAAAGATTCTGGAGTATCCTCAGGTTTCGGTAATAGCTATGAATAGTCATCGACTCCCGGGAAAGGGTAGAAGAATGGGACCTATTATGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAACCGGCCGTAGACAGTCAAGTAAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGAGAGGGGGTACATGTCAAGTATCCGCTTGGGATCATGTCTTCTTAG

Coding sequence (CDS)

ATGTGGGCCTTATTTCTAATTGAGAAGGGCTTCAATAAAAAGGAGATCGTGGGATCAAAGTGGACGTTCAAAATTTCCATGGCCGATTGCATCCCGAGGACTTTCTTGATTGAAAAAGTAGCGTGGCAAGGAAATGATTCAGTTCCAAAGCCAAAGATCGTAATTCTCGAACGAGCAATCGAAAAGATTCTGGAGTATCCTCAGGTTTCGGTAATAGCTATGAATAGTCATCGACTCCCGGGAAAGGGTAGAAGAATGGGACCTATTATGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAACCGGCCGTAGACAGTCAAGTAAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGAGAGGGGGTACATGTCAAGTATCCGCTTGGGATCATGTCTTCTTAG

Protein sequence

MWALFLIEKGFNKKEIVGSKWTFKISMADCIPRTFLIEKVAWQGNDSVPKPKIVILERAIEKILEYPQVSVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGKGREGVHVKYPLGIMSS

Homology

[Close]

BLAST of Cla97C11G214387 vs. NCBI nr
Match: KAF3946242.1 (hypothetical protein CMV_027466 [Castanea mollissima])

HSP 1 Score: 126.7 bits (317), Expect = 1.6e-25
Identity = 59/62 (95.16%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 69  VSVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGK 128
           V VIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQH C K
Sbjct: 45  VKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHHCSK 104

Query: 129 GR 131
           GR
Sbjct: 105 GR 106

[Close]

BLAST of Cla97C11G214387 vs. NCBI nr
Match: TYI09250.1 (hypothetical protein ES332_A09G058600v1 [Gossypium tomentosum])

HSP 1 Score: 124.8 bits (312), Expect = 6.1e-25
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 74  MNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGKGR 131
           MNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGKGR
Sbjct: 1   MNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGKGR 57

[Close]

BLAST of Cla97C11G214387 vs. NCBI nr
Match: TYI09266.1 (hypothetical protein ES332_A09G060200v1 [Gossypium tomentosum])

HSP 1 Score: 124.8 bits (312), Expect = 6.1e-25
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 74  MNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGKGR 131
           MNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGKGR
Sbjct: 1   MNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGKGR 57

[Close]

BLAST of Cla97C11G214387 vs. NCBI nr
Match: KAG5606025.1 (hypothetical protein H5410_027517 [Solanum commersonii])

HSP 1 Score: 117.5 bits (293), Expect = 9.7e-23
Identity = 57/62 (91.94%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 69  VSVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGK 128
           V VIAMNSHRLPGK RRMGPIMGHTMHYRRMIITLQP  DSQVKSNPRNNLIYGQ RCGK
Sbjct: 45  VKVIAMNSHRLPGKSRRMGPIMGHTMHYRRMIITLQP--DSQVKSNPRNNLIYGQRRCGK 104

Query: 129 GR 131
           GR
Sbjct: 105 GR 104

[Close]

BLAST of Cla97C11G214387 vs. NCBI nr
Match: KAG4119256.1 (hypothetical protein ERO13_D11G067360v2 [Gossypium hirsutum])

HSP 1 Score: 115.5 bits (288), Expect = 3.7e-22
Identity = 57/70 (81.43%), Postives = 57/70 (81.43%), Query Frame = 0


Query: 74  MNSHRLPGKGRRMGPIMGHTMHYRRMIITLQP-------------AVDSQVKSNPRNNLI 131
           MNSHRLPGKGRRMGPIMGHTMHYRRMIITLQP             AVDSQVKSNPRNNLI
Sbjct: 1   MNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRTTRNGAVDSQVKSNPRNNLI 60

[Close]

BLAST of Cla97C11G214387 vs. ExPASy Swiss-Prot
Match: A0A378 (50S ribosomal protein L23, chloroplastic OS=Coffea arabica OX=13443 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 8.6e-14
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 69  VSVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQP 106
           V VIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQP
Sbjct: 45  VKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQP 81

[Close]

BLAST of Cla97C11G214387 vs. ExPASy Swiss-Prot
Match: Q4VZK6 (50S ribosomal protein L23, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 8.6e-14
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 69  VSVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQP 106
           V VIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQP
Sbjct: 45  VKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQP 81

[Close]

BLAST of Cla97C11G214387 vs. ExPASy Swiss-Prot
Match: Q06GT3 (50S ribosomal protein L23, chloroplastic OS=Drimys granadensis OX=224735 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 8.6e-14
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 69  VSVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQP 106
           V VIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQP
Sbjct: 45  VKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQP 81

[Close]

BLAST of Cla97C11G214387 vs. ExPASy Swiss-Prot
Match: A0ZZ77 (50S ribosomal protein L23, chloroplastic OS=Gossypium barbadense OX=3634 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 8.6e-14
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 69  VSVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQP 106
           V VIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQP
Sbjct: 45  VKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQP 81

[Close]

BLAST of Cla97C11G214387 vs. ExPASy Swiss-Prot
Match: Q2L943 (50S ribosomal protein L23, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 8.6e-14
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 69  VSVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQP 106
           V VIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQP
Sbjct: 45  VKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQP 81

[Close]

BLAST of Cla97C11G214387 vs. ExPASy TrEMBL
Match: A0A5D2P0J4 (50S ribosomal protein L2, chloroplastic OS=Gossypium tomentosum OX=34277 GN=ES332_A09G060200v1 PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 2.9e-25
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 74  MNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGKGR 131
           MNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGKGR
Sbjct: 1   MNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGKGR 57

[Close]

BLAST of Cla97C11G214387 vs. ExPASy TrEMBL
Match: A0A5D2P3Y3 (50S ribosomal protein L2, chloroplastic OS=Gossypium tomentosum OX=34277 GN=ES332_A09G058600v1 PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 2.9e-25
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 74  MNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGKGR 131
           MNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGKGR
Sbjct: 1   MNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPAVDSQVKSNPRNNLIYGQHRCGKGR 57

[Close]

BLAST of Cla97C11G214387 vs. ExPASy TrEMBL
Match: A0A5D2D6S0 (50S ribosomal protein L2, chloroplastic OS=Gossypium darwinii OX=34276 GN=ES288_D03G093400v1 PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 2.0e-21
Identity = 55/70 (78.57%), Postives = 56/70 (80.00%), Query Frame = 0


Query: 74  MNSHRLPGKGRRMGPIMGHTMHYRRMIITLQP-------------AVDSQVKSNPRNNLI 131
           MNSHRLPGKG R+GPIMGHTMHYRRMIITLQP             AVDSQVKSNPRNNLI
Sbjct: 1   MNSHRLPGKGTRLGPIMGHTMHYRRMIITLQPGYSIPPLRTTRNGAVDSQVKSNPRNNLI 60

[Close]

BLAST of Cla97C11G214387 vs. ExPASy TrEMBL
Match: A0A411K5D6 (Ribosomal protein L2 OS=Rhabdodendron amazonicum OX=63102 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 7.5e-21
Identity = 60/97 (61.86%), Postives = 60/97 (61.86%), Query Frame = 0


Query: 69  VSVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQP----------------------- 128
           V VIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQP                       
Sbjct: 45  VKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRTEIKILNSMAIH 104

Query: 129 ------------AVDSQVKSNPRNNLIYGQHRCGKGR 131
                       AVDSQVKSNPRNNLIYGQ RCGKGR
Sbjct: 105 LYKTSTPSTRNGAVDSQVKSNPRNNLIYGQRRCGKGR 141

[Close]

BLAST of Cla97C11G214387 vs. ExPASy TrEMBL
Match: A0A2G9G6U0 (Mitochondrial/chloroplast ribosomal protein L2 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_26471 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.2e-20
Identity = 55/75 (73.33%), Postives = 56/75 (74.67%), Query Frame = 0


Query: 69  VSVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITL-------------QPAVDSQVKSNP 128
           V VIAMNSHRLP KGRRMGPIMGHTMHYRRMIIT+                VDSQVKSNP
Sbjct: 45  VKVIAMNSHRLPVKGRRMGPIMGHTMHYRRMIITMAIHLYKTSTPSTRNGTVDSQVKSNP 104

Query: 129 RNNLIYGQHRCGKGR 131
           RNNLIYGQH CGKGR
Sbjct: 105 RNNLIYGQHHCGKGR 119

[Close]

BLAST of Cla97C11G214387 vs. TAIR 10
Match: ATCG00840.1 (ribosomal protein L23.1 )

HSP 1 Score: 72.4 bits (176), Expect = 3.3e-13
Identity = 33/37 (89.19%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 69  VSVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQP 106
           V VIAMNSHRLPGK +RMGPI+GHTMHYRRMIITLQP
Sbjct: 45  VKVIAMNSHRLPGKVKRMGPILGHTMHYRRMIITLQP 81

[Close]

BLAST of Cla97C11G214387 vs. TAIR 10
Match: ATCG01300.1 (ribosomal protein L23 )

HSP 1 Score: 72.4 bits (176), Expect = 3.3e-13
Identity = 33/37 (89.19%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 69  VSVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQP 106
           V VIAMNSHRLPGK +RMGPI+GHTMHYRRMIITLQP
Sbjct: 45  VKVIAMNSHRLPGKVKRMGPILGHTMHYRRMIITLQP 81

[Close]

BLAST of Cla97C11G214387 vs. TAIR 10
Match: ATCG00830.1 (ribosomal protein L2 )

HSP 1 Score: 52.4 bits (124), Expect = 3.6e-07
Identity = 24/29 (82.76%), Postives = 24/29 (82.76%), Query Frame = 0


Query: 102 TLQPAVDSQVKSNPRNNLIYGQHRCGKGR 131
           T   AVDSQVKSNPRNNLI GQH CGKGR
Sbjct: 13  TRNGAVDSQVKSNPRNNLICGQHHCGKGR 41

[Close]

BLAST of Cla97C11G214387 vs. TAIR 10
Match: ATCG01310.1 (ribosomal protein L2 )

HSP 1 Score: 52.4 bits (124), Expect = 3.6e-07
Identity = 24/29 (82.76%), Postives = 24/29 (82.76%), Query Frame = 0


Query: 102 TLQPAVDSQVKSNPRNNLIYGQHRCGKGR 131
           T   AVDSQVKSNPRNNLI GQH CGKGR
Sbjct: 13  TRNGAVDSQVKSNPRNNLICGQHHCGKGR 41

The following BLAST results are available for this feature:

BLAST of Cla97C11G214387 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF3946242.1	1.6e-25	95.16	hypothetical protein CMV_027466 [Castanea mollissima]	[more]
TYI09250.1	6.1e-25	100.00	hypothetical protein ES332_A09G058600v1 [Gossypium tomentosum]	[more]
TYI09266.1	6.1e-25	100.00	hypothetical protein ES332_A09G060200v1 [Gossypium tomentosum]	[more]
KAG5606025.1	9.7e-23	91.94	hypothetical protein H5410_027517 [Solanum commersonii]	[more]
KAG4119256.1	3.7e-22	81.43	hypothetical protein ERO13_D11G067360v2 [Gossypium hirsutum]	[more]

BLAST of Cla97C11G214387 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A0A378	8.6e-14	97.30	50S ribosomal protein L23, chloroplastic OS=Coffea arabica OX=13443 GN=rpl23-A P...	[more]
Q4VZK6	8.6e-14	97.30	50S ribosomal protein L23, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl23-A P...	[more]
Q06GT3	8.6e-14	97.30	50S ribosomal protein L23, chloroplastic OS=Drimys granadensis OX=224735 GN=rpl2...	[more]
A0ZZ77	8.6e-14	97.30	50S ribosomal protein L23, chloroplastic OS=Gossypium barbadense OX=3634 GN=rpl2...	[more]
Q2L943	8.6e-14	97.30	50S ribosomal protein L23, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rpl23-...	[more]

BLAST of Cla97C11G214387 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D2P0J4	2.9e-25	100.00	50S ribosomal protein L2, chloroplastic OS=Gossypium tomentosum OX=34277 GN=ES33...	[more]
A0A5D2P3Y3	2.9e-25	100.00	50S ribosomal protein L2, chloroplastic OS=Gossypium tomentosum OX=34277 GN=ES33...	[more]
A0A5D2D6S0	2.0e-21	78.57	50S ribosomal protein L2, chloroplastic OS=Gossypium darwinii OX=34276 GN=ES288_...	[more]
A0A411K5D6	7.5e-21	61.86	Ribosomal protein L2 OS=Rhabdodendron amazonicum OX=63102 GN=rpl2 PE=3 SV=1	[more]
A0A2G9G6U0	2.2e-20	73.33	Mitochondrial/chloroplast ribosomal protein L2 OS=Handroanthus impetiginosus OX=...	[more]

BLAST of Cla97C11G214387 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00840.1	3.3e-13	89.19	ribosomal protein L23.1	[more]
ATCG01300.1	3.3e-13	89.19	ribosomal protein L23	[more]
ATCG00830.1	3.6e-07	82.76	ribosomal protein L2	[more]
ATCG01310.1	3.6e-07	82.76	ribosomal protein L2	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 39..109 e-value: 5.0E-5 score: 25.6
IPR012678	Ribosomal protein L23/L15e core domain superfamily	SUPERFAMILY	54189	Ribosomal proteins S24e, L23 and L15e	coord: 65..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C11G214387.1	Cla97C11G214387.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0009536	plastid
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0016740	transferase activity