Cla97C11G214297 (gene) Watermelon (97103) v2.5

Overview
NameCla97C11G214297
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionATP synthase subunit beta, chloroplastic
LocationCla97Chr11: 7721581 .. 7725872 (+)
RNA-Seq ExpressionCla97C11G214297
SyntenyCla97C11G214297
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTAATATTTACAACGCTTTGATAGTTAAAGGTCAAGATACTGCCGGTCAAGAAATTAATGTGACTTGTGAAGTACAGCAATTATTAGGAAATAATCGAGTTAGAGCTGTAGCTATGAGTGCTACAGATGGTCTAATGAGAGGAATGCAATTGTTTGGAATGCAAGGGGCGTCAGCAATGGCCCCACGCGTAGGCGTCTCGACGATCTTGCTCGGACCGGGCTTTAGTCTTTGGTTGTCATCCTGGAACCAATGGTTAGAAGGGCCAACTATGTATCAAAATGGCGACTAGCCCTGCTTCCATTTTTCTTTGATTATTAAGGAGTATAAGAAGAGAGCAAAGTTGGAGTAGGGTATGAGAGGGCGTAGCAGTCAAAAACAGGATATGTGACGGATTTCTCTTTCGTTATTCCCAACGACGAATTGTCCCGAACAGCTACAACCGAAACACAACGGCTTCCGTGGATGCATCTGTTGTTGATTCAATTGAATGCCAGTCCAGGAGTCGATTCTGATCATGAATGTCGTAGGCGTTAGACTCCTTTTATGCCACCAGGCAGGGAGTTTCATAATAGAACGTCTCCTTCGATCCCCTCTAACAGTGCGTAATTAATTGATCATCTAACACCGCTTGGTCTATTAGTGAACTATCTCTCCAGGGATTGTGAAAGATGTTCCACTAGAAATATTCTTGTTATTGCTTCGACCCATATTCCCCAAAAAGTGGATCCCGCTCTAATAGCTCCGAATAAATTAAATACATGCATTAAAATACGAAGGCTTCTTATTCCACAACAACGAAAGCACTTTTTCACTCTTTCATATACTAGGGGATTTCACTTGGAAAAGAAAATGTTCCATACTAATGGATTCGGTTCCATAACCATGGGCCTCTTCAAGGCATAATGTTGAGAATACCCGTTGAATTGGAAGGAATAAGTTCGACAGCGGATCACGAAATCTTGGCGATCTTCTCTATCTAATGAATGGGAGTCCGCTTTGAAATCGTCCGCCCTGCACCCACCCCCCGAGTATATGCTTCAACAGGAATTAAACAAGGGTAGATTGATACAATAGAAACCTCTGGTAAAATGCCCACCCGTAACCCAGCACGGGAGAATCGATGACTGCATCAAAGATGCACTTGCTAGTACTAGTACATCTGAGAATTCTTAATTGGCTAGTTGTAAATAGACCCAGACTGTGGAACAAAGGATTATCCCGGACCTACACCGAGAAAAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCACGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTCTCATCTCTTTCAATCACTTCGATTTCTAGCAGTAAACTCTTCCGGGGGGGACGTAAAAAGAGTCCGAGTTCGCTTCATTTCTCATTTTCTTCGCTTCCCAAGATATTTAGGGAAAAGCCCCTTCTTTCAGTACAATAAGGGAGTGCTTTTCTTCCTTTCGTTTAGAATTTCATAAACCTAAATTAAAACTAAACTAAATGATAAATATTATAAATCAAGCGAAATCCAGTAAAGTATTGTACTACAAAACAAAGAATAATTAGATGACTTGGATCAATATCCGGATCCAACTTTTTCGTCACAAATCAAAGAATTCATTTTTGAAGTTTTGAGTTAAGTAAGGCTTTACTTGATTGAATTTTGATTCGAGGGAACGAAAGCGTGGAGCTGAAATAACTCACTCACAACACCTTTTAAAGGATTACGTGGTACGATTAGATCGAATAAGCCCTTATGGAATAAATATTCAGCCGCCTGTGAACCCTCAGGGACTGTCTTATTCAATGTTTGTTCAATTACTCTTTTACCCGCAAATGCGATGTACGATTACGTGAGTTGCTCAAACAATCCCAATCAGCCCCTCTCACGGTAGAAGAACAGATAATGACTATTTATACCGGAACTAATGGTTATCTTGATTCATTAGAAATTGGACAAGTAAGGAAATTTCTCGTTGAGTTACGTACTTACGTAAAAACGAATAAACCTCACGTCAAATAACATCAAAAGTGTTGGTTTCAGAAGATGGAATGTCTAAAGTTTTTTCACCTGGAGAACTCATTGGATTGTTGCGAGCGGAAGTCAGAACGAATACCGAGACTCCTTTCTTTTACGCCTTATTAGTTATTCAAGCGGATCACTTTGTTTGTAATTGTGAGTATGAAATCCAATTTTTAGTAATCAACGACTCAACTCTTAAAACTTTTTCCTATTTCTAGAAATCATTTCACTGCATTTCTTGGTGTCAAAACAGGTTAAAATAGAGAATCTATTCTCTTTTTTTAAAAAAAAAATGATCTTGGAGATTGTGTCGAACATTTGTCTCTGATTTCCAAGGACAAGCACGAAAAAGTCACCCAAAACGGCATCGTCAATGGCGCCAATCCAATTTATATAACTTCTTGAAAGACTCGATTCAAAAATGCTCCATACCCTCAAACGCGGTACTACTCATTCTCGTTCGATAGGAATTTGATTAAGAAACATTACGAATATAACCACGCGGAGCGCCGGACCGGCCTATCGAAGAAAGAGATCATTAAACCTATTTAGCCGAGCTAAGGTGTGGAACCCTCGTTTTTGAGTCTTTTTTTTTTATAATAAGCTAAAGGGGCTGGGAATCGCAAGAATTGAGAAGTCCTCCACCTAAAAAAGCCATTCAGGTTCGTTATCGATTAGGTATCAGTGGGAACATAAAGATCAAAGAGTTAACTAAGTATCAGATCGACCAAATTGAACAAATGATAGATCAAGATCATATTGTTCATTGGGAATTGAAGAGAGGAGAACGAGCGCCAGTTGTTGCGCTCGTTCAGGTTCCTGCTCCAGAAAAGGTGGTTGTGTATTTCCCAAGCGGAAAGTCGTTGGTGGGCAAACCAAGGCCAGTGCCCTACGTGTCCGGTAACCTGAGGTCGGGCTAACTAATGAAAGTGCAACGCCCGGTTCAGCGATACATTCATCATATTTTCGAGGCGAAGTAAGGGTGAGCTCGACGCGCTTAGCCGCGTTCATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTGAGCGGTCATTTAGGGGCCTTAGCTGGATTTTTCCCCAATAACCGAATACTTTTGTCTGTAAATACTGCATATTTGATTCCATCCATAAATTTTCTTCCCTATGAGTTCGAGTCTCAATAAGAATGCTAGTTCTTACTGTTCATATGTTATGATATGAATATACCACACCAATTCGTTATGTATGGATGATGAGATTCCATCGATACAGAGCCAATTCCAATAGACTTATTGGAGGGTCCCATTGGCGTGCATCCAGTAGGAATTGAACCTACGAATTCGCCAATTATGAGTTGGGCGCTTTAACCGGAGCTGTTGACAATTGAATCCAATTTTGCCCATTATTTTCATTTTCGTATCCGTAATAGTGCGAAAAGAAGGAAGGCCGTTGGTACGAAAGACGTTCGGAGGTGAATTCGACCTTTGATTGAATCTATTATCAGTGCTGGCAACCGTAGAACCAATGAAAGGCGCCAGTTGTTGCGCTCGTTCAGGTTCCTGCTCCAGAAAAGGTGGTTGTGTATTTCCCAAGCGGAAAGTCGTTGGTGGGCCCAAAGAAATAGCTTAGTAGCCACATTAGCCGCGCTTGGGATGATTTTAGGCGCGGCGTATTCCCTTTGGCTATATAATCGTGTGGTTTCTGGAAATTTAAAACCCGATTTCCTCCATAAATTCGTGTGAGTGTGCAGTTATGCTTCGGATGCTTCGCCATAGAATAGATCAACCCAGTTCCCGTTCTTTTCCGGTGCACTCGCTTTATATCTCCGACACACAAGGAAGGACGCGGTGGGAAGAAAGCAACCCTAGCCCCTGTCCGGCTGATCATTCCGCTGGCATCTTGGGTCAACATGAAAACTACCCTACATCTGCGGGAACCCCGCAAATCTTCTCGGCTAGTTACTCTGTGGAAAGTCCTGTCTACTTTTTACCAAAGCGGAGTCGAAAGCAGAATACAAAGTCCGTTTTTCATGCGGGGGGTGGGGCTAATCCGTTTTCGGGGCCGAAACTCTTTTTTCTTGAAACCAGAGGACGAGCAGCGGTACCAGGGTGA

mRNA sequence

ATGCCTAATATTTACAACGCTTTGATAGTTAAAGGTCAAGATACTGCCGGTCAAGAAATTAATGTGACTTGTGAAGTACAGCAATTATTAGGAAATAATCGAGTTAGAGCTGTAGCTATGAGTGCTACAGATGGTCTAATGAGAGGAATGCAATTGTTTGGAATGCAAGGGGCGTCAGCAATGGCCCCACGCGTAGGCGTCTCGACGATCTTGCTCGGACCGGGCTTTAGTCTTTGGTTGTCATCCTGGAACCAATGGGGCTGGGAATCGCAAGAATTGAGAAGTCCTCCACCTAAAAAAGCCATTCAGGTTCGTTATCGATTAGGTATCAGTGGGAACATAAAGATCAAAGAGTTAACTAAGTATCAGATCGACCAAATTGAACAAATGATAGATCAAGATCATATTGTTCATTGGGAATTGAAGAGAGGAGAACGAGCGCCAGTTGTTGCGCTCGTTCAGGTTCCTGCTCCAGAAAAGGTGGTTGTGTATTTCCCAAGCGGAAAGTCGTTGGTGGGCAAACCAAGGCCAGTGCCCTACGTGTCCGTTATGCTTCGGATGCTTCGCCATAGAATAGATCAACCCAGTTCCCGTTCTTTTCCGGTGCACTCGCTTTATATCTCCGACACACAAGGAAGGACGCGGTGGGAAGAAAGCAACCCTAGCCCCTGTCCGGCTGATCATTCCGCTGGCATCTTGGGTCAACATGAAAACTACCCTACATCTGCGGGAACCCCGCAAATCTTCTCGGCTAGTTACTCTGTGGAAAGTCCTGTCTACTTTTTACCAAAGCGGAGTCGAAAGCAGAATACAAAGTCCGTTTTTCATGCGGGGGGTGGGGCTAATCCGTTTTCGGGGCCGAAACTCTTTTTTCTTGAAACCAGAGGACGAGCAGCGGTACCAGGGTGA

Coding sequence (CDS)

ATGCCTAATATTTACAACGCTTTGATAGTTAAAGGTCAAGATACTGCCGGTCAAGAAATTAATGTGACTTGTGAAGTACAGCAATTATTAGGAAATAATCGAGTTAGAGCTGTAGCTATGAGTGCTACAGATGGTCTAATGAGAGGAATGCAATTGTTTGGAATGCAAGGGGCGTCAGCAATGGCCCCACGCGTAGGCGTCTCGACGATCTTGCTCGGACCGGGCTTTAGTCTTTGGTTGTCATCCTGGAACCAATGGGGCTGGGAATCGCAAGAATTGAGAAGTCCTCCACCTAAAAAAGCCATTCAGGTTCGTTATCGATTAGGTATCAGTGGGAACATAAAGATCAAAGAGTTAACTAAGTATCAGATCGACCAAATTGAACAAATGATAGATCAAGATCATATTGTTCATTGGGAATTGAAGAGAGGAGAACGAGCGCCAGTTGTTGCGCTCGTTCAGGTTCCTGCTCCAGAAAAGGTGGTTGTGTATTTCCCAAGCGGAAAGTCGTTGGTGGGCAAACCAAGGCCAGTGCCCTACGTGTCCGTTATGCTTCGGATGCTTCGCCATAGAATAGATCAACCCAGTTCCCGTTCTTTTCCGGTGCACTCGCTTTATATCTCCGACACACAAGGAAGGACGCGGTGGGAAGAAAGCAACCCTAGCCCCTGTCCGGCTGATCATTCCGCTGGCATCTTGGGTCAACATGAAAACTACCCTACATCTGCGGGAACCCCGCAAATCTTCTCGGCTAGTTACTCTGTGGAAAGTCCTGTCTACTTTTTACCAAAGCGGAGTCGAAAGCAGAATACAAAGTCCGTTTTTCATGCGGGGGGTGGGGCTAATCCGTTTTCGGGGCCGAAACTCTTTTTTCTTGAAACCAGAGGACGAGCAGCGGTACCAGGGTGA

Protein sequence

MPNIYNALIVKGQDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMRGMQLFGMQGASAMAPRVGVSTILLGPGFSLWLSSWNQWGWESQELRSPPPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDHIVHWELKRGERAPVVALVQVPAPEKVVVYFPSGKSLVGKPRPVPYVSVMLRMLRHRIDQPSSRSFPVHSLYISDTQGRTRWEESNPSPCPADHSAGILGQHENYPTSAGTPQIFSASYSVESPVYFLPKRSRKQNTKSVFHAGGGANPFSGPKLFFLETRGRAAVPG
Homology
[Close]
BLAST of Cla97C11G214297 vs. NCBI nr
Match: ALE29230.1 (ribosomal protein S13 [Heuchera parviflora var. saurensis])

HSP 1 Score: 107.5 bits (267), Expect = 2.1e-19
Identity = 50/58 (86.21%), Postives = 54/58 (93.10%), Query Frame = 0 

Query: 98  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDHIVHWELKRGERAPVVALVQV 156
           PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDH+VHWELKRGERA +  L+ +
Sbjct: 27  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDHVVHWELKRGERADIERLISI 84

[Close]
BLAST of Cla97C11G214297 vs. NCBI nr
Match: AAX62993.1 (ATP synthase beta subunit, partial [Phyllanthus epiphyllanthus])

HSP 1 Score: 105.9 bits (263), Expect = 6.1e-19
Identity = 70/123 (56.91%), Postives = 83/123 (67.48%), Query Frame = 0 

Query: 1   MPNIYNALIVKGQDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMRGMQLFGMQGASA 60
           MPNIYNAL+VKGQDTAGQ+INVTCEVQQLLGNNRVRAVAMSATDGLMRGM++    GAS 
Sbjct: 25  MPNIYNALVVKGQDTAGQQINVTCEVQQLLGNNRVRAVAMSATDGLMRGMEVID-TGASL 84

Query: 61  MAPRVGVSTILLGPGFSLWLSSWNQWGWESQELRSPPPKKA---IQVRYRLGI-SGNIKI 120
             P VG ST  LG  F++     ++ G       SP  + A   IQ+  +L I    IK+
Sbjct: 85  SVP-VGGST--LGRIFNVLGEPVDELGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKV 143

[Close]
BLAST of Cla97C11G214297 vs. NCBI nr
Match: AUD38521.1 (ribosomal protein S13 [Deppea grandiflora])

HSP 1 Score: 105.1 bits (261), Expect = 1.0e-18
Identity = 50/58 (86.21%), Postives = 53/58 (91.38%), Query Frame = 0 

Query: 98  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDHIVHWELKRGERAPVVALVQV 156
           PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI QDH+VHWELKRGERA V  L+ +
Sbjct: 27  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHVVHWELKRGERADVERLISI 84

[Close]
BLAST of Cla97C11G214297 vs. NCBI nr
Match: PHT60924.1 (Ribosomal protein S13, mitochondrial [Capsicum annuum])

HSP 1 Score: 104.8 bits (260), Expect = 1.4e-18
Identity = 49/58 (84.48%), Postives = 53/58 (91.38%), Query Frame = 0 

Query: 98  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDHIVHWELKRGERAPVVALVQV 156
           PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI QDH+VHWELKRGERA +  L+ +
Sbjct: 27  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHVVHWELKRGERADIERLISI 84

[Close]
BLAST of Cla97C11G214297 vs. NCBI nr
Match: AUD38493.1 (ribosomal protein S13 [Mostuea sp. NW-2017])

HSP 1 Score: 104.8 bits (260), Expect = 1.4e-18
Identity = 49/58 (84.48%), Postives = 53/58 (91.38%), Query Frame = 0 

Query: 98  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDHIVHWELKRGERAPVVALVQV 156
           PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI QDH+VHWELKRGERA +  L+ +
Sbjct: 27  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHVVHWELKRGERADIERLISI 84

[Close]
BLAST of Cla97C11G214297 vs. ExPASy Swiss-Prot
Match: P05488 (Ribosomal protein S13, mitochondrial OS=Nicotiana tabacum OX=4097 GN=RPS13 PE=3 SV=2)

HSP 1 Score: 104.8 bits (260), Expect = 1.8e-21
Identity = 49/58 (84.48%), Postives = 53/58 (91.38%), Query Frame = 0 

Query: 98  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDHIVHWELKRGERAPVVALVQV 156
           PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI QDH+VHWELKRGERA +  L+ +
Sbjct: 27  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHVVHWELKRGERADIERLISI 84

[Close]
BLAST of Cla97C11G214297 vs. ExPASy Swiss-Prot
Match: A0ZZ42 (ATP synthase subunit beta, chloroplastic OS=Gossypium barbadense OX=3634 GN=atpB PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.5e-20
Identity = 66/123 (53.66%), Postives = 82/123 (66.67%), Query Frame = 0 

Query: 1   MPNIYNALIVKGQDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMRGMQLFGMQGASA 60
           MPNIYNAL+VKGQDTAGQ+INVTCEVQQLLGNNRVRAVAMSATDGL RGM++  +   +A
Sbjct: 40  MPNIYNALVVKGQDTAGQQINVTCEVQQLLGNNRVRAVAMSATDGLTRGMEV--IDTGTA 99

Query: 61  MAPRVGVSTILLGPGFSLWLSSWNQWGWESQELRSPPPKKA---IQVRYRLGI-SGNIKI 120
           ++  VG +T  LG  F++     +  G       SP  K A   IQ+  +L I    IK+
Sbjct: 100 LSVPVGGAT--LGRIFNVLGEPVDNLGPVDTRTTSPIHKSAPAFIQLDTKLSIFETGIKV 158

[Close]
BLAST of Cla97C11G214297 vs. ExPASy Swiss-Prot
Match: Q2L917 (ATP synthase subunit beta, chloroplastic OS=Gossypium hirsutum OX=3635 GN=atpB PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.5e-20
Identity = 66/123 (53.66%), Postives = 82/123 (66.67%), Query Frame = 0 

Query: 1   MPNIYNALIVKGQDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMRGMQLFGMQGASA 60
           MPNIYNAL+VKGQDTAGQ+INVTCEVQQLLGNNRVRAVAMSATDGL RGM++  +   +A
Sbjct: 40  MPNIYNALVVKGQDTAGQQINVTCEVQQLLGNNRVRAVAMSATDGLTRGMEV--IDTGAA 99

Query: 61  MAPRVGVSTILLGPGFSLWLSSWNQWGWESQELRSPPPKKA---IQVRYRLGI-SGNIKI 120
           ++  VG +T  LG  F++     +  G       SP  K A   IQ+  +L I    IK+
Sbjct: 100 LSVPVGGAT--LGRIFNVLGEPVDNLGPVDTRTTSPIHKSAPAFIQLDTKLSIFETGIKV 158

[Close]
BLAST of Cla97C11G214297 vs. ExPASy Swiss-Prot
Match: P08977 (Ribosomal protein S13, mitochondrial OS=Zea mays OX=4577 GN=RPS13 PE=3 SV=2)

HSP 1 Score: 100.9 bits (250), Expect = 2.6e-20
Identity = 47/58 (81.03%), Postives = 52/58 (89.66%), Query Frame = 0 

Query: 98  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDHIVHWELKRGERAPVVALVQV 156
           PKKAIQ+RYRLGISGNIKI ELTKYQIDQIEQMI QDH+VHWELKRGERA +  L+ +
Sbjct: 27  PKKAIQLRYRLGISGNIKIHELTKYQIDQIEQMIAQDHVVHWELKRGERADIERLISI 84

[Close]
BLAST of Cla97C11G214297 vs. ExPASy Swiss-Prot
Match: Q6QBP2 (ATP synthase subunit beta, chloroplastic OS=Castanea sativa OX=21020 GN=atpB PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.4e-20
Identity = 53/70 (75.71%), Postives = 60/70 (85.71%), Query Frame = 0 

Query: 1   MPNIYNALIVKGQDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMRGMQLFGMQGASA 60
           MPNIYNAL+VKG+DTAGQ+INVTCEVQQLLGNNRVRAVAMSATDGLMRGM++    GA  
Sbjct: 40  MPNIYNALVVKGRDTAGQQINVTCEVQQLLGNNRVRAVAMSATDGLMRGMEVID-TGAPL 99

Query: 61  MAPRVGVSTI 71
             P VG +T+
Sbjct: 100 SVP-VGGATL 107

[Close]
BLAST of Cla97C11G214297 vs. ExPASy TrEMBL
Match: A0A0M3TGS7 (Ribosomal protein S13 OS=Heuchera parviflora var. saurensis OX=1708480 GN=rps13 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.0e-19
Identity = 50/58 (86.21%), Postives = 54/58 (93.10%), Query Frame = 0 

Query: 98  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDHIVHWELKRGERAPVVALVQV 156
           PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDH+VHWELKRGERA +  L+ +
Sbjct: 27  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDHVVHWELKRGERADIERLISI 84

[Close]
BLAST of Cla97C11G214297 vs. ExPASy TrEMBL
Match: Q4KU83 (ATP synthase subunit beta (Fragment) OS=Phyllanthus epiphyllanthus OX=256096 GN=atpB PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.0e-19
Identity = 70/123 (56.91%), Postives = 83/123 (67.48%), Query Frame = 0 

Query: 1   MPNIYNALIVKGQDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMRGMQLFGMQGASA 60
           MPNIYNAL+VKGQDTAGQ+INVTCEVQQLLGNNRVRAVAMSATDGLMRGM++    GAS 
Sbjct: 25  MPNIYNALVVKGQDTAGQQINVTCEVQQLLGNNRVRAVAMSATDGLMRGMEVID-TGASL 84

Query: 61  MAPRVGVSTILLGPGFSLWLSSWNQWGWESQELRSPPPKKA---IQVRYRLGI-SGNIKI 120
             P VG ST  LG  F++     ++ G       SP  + A   IQ+  +L I    IK+
Sbjct: 85  SVP-VGGST--LGRIFNVLGEPVDELGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKV 143

[Close]
BLAST of Cla97C11G214297 vs. ExPASy TrEMBL
Match: A0A2H4WYZ0 (Ribosomal protein S13 OS=Deppea grandiflora OX=43474 GN=rps13 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 5.1e-19
Identity = 50/58 (86.21%), Postives = 53/58 (91.38%), Query Frame = 0 

Query: 98  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDHIVHWELKRGERAPVVALVQV 156
           PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI QDH+VHWELKRGERA V  L+ +
Sbjct: 27  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHVVHWELKRGERADVERLISI 84

[Close]
BLAST of Cla97C11G214297 vs. ExPASy TrEMBL
Match: A0A7S9DFZ3 (Ribosomal protein S13 OS=Solanum stenotomum subsp. goniocalyx OX=1050191 GN=rps13 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 6.6e-19
Identity = 49/58 (84.48%), Postives = 53/58 (91.38%), Query Frame = 0 

Query: 98  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDHIVHWELKRGERAPVVALVQV 156
           PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI QDH+VHWELKRGERA +  L+ +
Sbjct: 27  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHVVHWELKRGERADIERLISI 84

[Close]
BLAST of Cla97C11G214297 vs. ExPASy TrEMBL
Match: A0A7D7FCM0 (Ribosomal protein S13 OS=Solanum melongena OX=4111 GN=rps13 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 6.6e-19
Identity = 49/58 (84.48%), Postives = 53/58 (91.38%), Query Frame = 0 

Query: 98  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIDQDHIVHWELKRGERAPVVALVQV 156
           PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMI QDH+VHWELKRGERA +  L+ +
Sbjct: 27  PKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHVVHWELKRGERADIERLISI 84

[Close]
BLAST of Cla97C11G214297 vs. TAIR 10
Match: ATCG00480.1 (ATP synthase subunit beta )

HSP 1 Score: 95.5 bits (236), Expect = 7.7e-20
Identity = 49/70 (70.00%), Postives = 58/70 (82.86%), Query Frame = 0 

Query: 1   MPNIYNALIVKGQDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMRGMQLFGMQGASA 60
           MPNIYNAL+VKG+DT GQEINVTCEVQQLLGNNRVRAVAMSAT+GL RGM +  M   + 
Sbjct: 40  MPNIYNALVVKGRDTLGQEINVTCEVQQLLGNNRVRAVAMSATEGLKRGMDVVDM--GNP 99

Query: 61  MAPRVGVSTI 71
           ++  VG +T+
Sbjct: 100 LSVPVGGATL 107

The following BLAST results are available for this feature:
BLAST of Cla97C11G214297 vs. NCBI nr
Match NameE-valueIdentityDescription
ALE29230.12.1e-1986.21ribosomal protein S13 [Heuchera parviflora var. saurensis][more]
AAX62993.16.1e-1956.91ATP synthase beta subunit, partial [Phyllanthus epiphyllanthus][more]
AUD38521.11.0e-1886.21ribosomal protein S13 [Deppea grandiflora][more]
PHT60924.11.4e-1884.48Ribosomal protein S13, mitochondrial [Capsicum annuum][more]
AUD38493.11.4e-1884.48ribosomal protein S13 [Mostuea sp. NW-2017][more]
BLAST of Cla97C11G214297 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P054881.8e-2184.48Ribosomal protein S13, mitochondrial OS=Nicotiana tabacum OX=4097 GN=RPS13 PE=3 ... [more]
A0ZZ421.5e-2053.66ATP synthase subunit beta, chloroplastic OS=Gossypium barbadense OX=3634 GN=atpB... [more]
Q2L9171.5e-2053.66ATP synthase subunit beta, chloroplastic OS=Gossypium hirsutum OX=3635 GN=atpB P... [more]
P089772.6e-2081.03Ribosomal protein S13, mitochondrial OS=Zea mays OX=4577 GN=RPS13 PE=3 SV=2[more]
Q6QBP23.4e-2075.71ATP synthase subunit beta, chloroplastic OS=Castanea sativa OX=21020 GN=atpB PE=... [more]
BLAST of Cla97C11G214297 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0M3TGS71.0e-1986.21Ribosomal protein S13 OS=Heuchera parviflora var. saurensis OX=1708480 GN=rps13 ... [more]
Q4KU833.0e-1956.91ATP synthase subunit beta (Fragment) OS=Phyllanthus epiphyllanthus OX=256096 GN=... [more]
A0A2H4WYZ05.1e-1986.21Ribosomal protein S13 OS=Deppea grandiflora OX=43474 GN=rps13 PE=3 SV=1[more]
A0A7S9DFZ36.6e-1984.48Ribosomal protein S13 OS=Solanum stenotomum subsp. goniocalyx OX=1050191 GN=rps1... [more]
A0A7D7FCM06.6e-1984.48Ribosomal protein S13 OS=Solanum melongena OX=4111 GN=rps13 PE=3 SV=1[more]
BLAST of Cla97C11G214297 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00480.17.7e-2070.00ATP synthase subunit beta [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004100ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domainPFAMPF02874ATP-synt_ab_Ncoord: 1..50
e-value: 1.8E-10
score: 41.2
NoneNo IPR availableGENE3D1.10.8.50coord: 98..143
e-value: 5.8E-6
score: 28.4
NoneNo IPR availableGENE3D2.40.10.170coord: 1..57
e-value: 4.3E-17
score: 64.0
NoneNo IPR availablePANTHERPTHR1087130S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18coord: 97..155
NoneNo IPR availablePANTHERPTHR10871:SF38RIBOSOMAL PROTEIN S13coord: 97..155
NoneNo IPR availableCDDcd18115ATP-synt_F1_beta_Ncoord: 1..50
e-value: 6.77749E-22
score: 85.261
IPR001892Ribosomal protein S13PROSITEPS50159RIBOSOMAL_S13_2coord: 98..155
score: 10.972571
IPR036121ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamilySUPERFAMILY50615N-terminal domain of alpha and beta subunits of F1 ATP synthasecoord: 1..54

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C11G214297.1Cla97C11G214297.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0046034 ATP metabolic process
biological_process GO:1902600 proton transmembrane transport
biological_process GO:0006412 translation
cellular_component GO:0016020 membrane
cellular_component GO:0005739 mitochondrion
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome