Cla97C11G214270 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C11G214270
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	Protein Ycf2
Location	Cla97Chr11: 7714985 .. 7715726 (-)
RNA-Seq Expression	Cla97C11G214270
Synteny	Cla97C11G214270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGACATTGGAAGCCCCATTCATAGGTCCGAGATCCACATCTATGAATTGAAAGGTCCGAATGATCAACTCTGCAATCAGTTGTTAGAATCAATAGGTCTTCAAATCGTTCATTTGAAAAAATTGAAACCTACTCCACTGAATCGAGGTACTTTCTCGTTTTTGGCATAAAGCCCAACAATTGCTTAACGAATGTATCTAAGGCTATCAGATATACCGATTTGCTTCAGTGAAAAATTTGGCCGGGATCTTGAACTAAGAAATAGATTCTAGAAGCTAAACTAAAAAAGGGTATCCTGAGCAATTTCAATAATCGGGTTCATTGATATTCCTGGTATAGTAGATGCTATCACACATACAATCATACTCAATTCGATGGAATTGTTTGATCTTAAAGGAGATCTTCTATAATTTCGCACGTGAGGGGTTATTTCTTGGTTTCGTCCAGTCATTAATAACTTGATTATTTTTAGATAATAGTAGATAGAAACAACGCTCGTAAGGAGTCCTATTGAAACCAAGAAATATAGGCCTGCCTGCCATCCACACCAGAATAAATGAAGTTTTCCGAAAAAACCTGCTAGTGGAGGAAGACCTCCTAAGGATAAGAGACATAGGGCTAAAGAGAGAGCCAAAAGAGGATCTTTTGTGTATAATCCTGCATAATCTCGAATGTTATCAGTTCCGGTACGTAGACCAAATGATACAATGCGGTTTTCATCCATTAAATAATATTTAA

mRNA sequence

ATGAAGGACATTGGAAGCCCCATTCATAGGTCCGAGATCCACATCTATGAATTGAAAGGTCCGAATGATCAACTCTGCAATCAGTTGTTAGAATCAATAGGTCTTCAAATCGTTCATTTGAAAAAATTGAAACCTACTCCACTGAATCGAGGCCTGCCTGCCATCCACACCAGAATAAATGAAGTTTTCCGAAAAAACCTGCTAGTGGAGGAAGACCTCCTAAGGATAAGAGACATAGGGCTAAAGAGAGAGCCAAAAGAGGATCTTTTGTGTATAATCCTGCATAATCTCGAATGTTATCAGTTCCGGTACGTAGACCAAATGATACAATGCGGTTTTCATCCATTAAATAATATTTAA

Coding sequence (CDS)

ATGAAGGACATTGGAAGCCCCATTCATAGGTCCGAGATCCACATCTATGAATTGAAAGGTCCGAATGATCAACTCTGCAATCAGTTGTTAGAATCAATAGGTCTTCAAATCGTTCATTTGAAAAAATTGAAACCTACTCCACTGAATCGAGGCCTGCCTGCCATCCACACCAGAATAAATGAAGTTTTCCGAAAAAACCTGCTAGTGGAGGAAGACCTCCTAAGGATAAGAGACATAGGGCTAAAGAGAGAGCCAAAAGAGGATCTTTTGTGTATAATCCTGCATAATCTCGAATGTTATCAGTTCCGGTACGTAGACCAAATGATACAATGCGGTTTTCATCCATTAAATAATATTTAA

Protein sequence

MKDIGSPIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPTPLNRGLPAIHTRINEVFRKNLLVEEDLLRIRDIGLKREPKEDLLCIILHNLECYQFRYVDQMIQCGFHPLNNI

Homology

[Close]

BLAST of Cla97C11G214270 vs. NCBI nr
Match: YP_009476227.1 (Ycf2 [Eurycorymbus cavaleriei] >YP_009476249.1 Ycf2 [Eurycorymbus cavaleriei] >AVM38231.1 Ycf2 [Eurycorymbus cavaleriei] >AVM38253.1 Ycf2 [Eurycorymbus cavaleriei])

HSP 1 Score: 85.5 bits (210), Expect = 3.4e-13
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = 0


Query: 7   PIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPTPLN 50
           PIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKP  L+
Sbjct: 904 PIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPLLLD 946

[Close]

BLAST of Cla97C11G214270 vs. NCBI nr
Match: QKY62328.1 (Ycf2 [Acer acuminatum] >QKY62350.1 Ycf2 [Acer acuminatum])

HSP 1 Score: 85.5 bits (210), Expect = 3.4e-13
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 6   SPIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKP 46
           +PIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKP
Sbjct: 896 TPIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKP 935

[Close]

BLAST of Cla97C11G214270 vs. NCBI nr
Match: ASY93839.1 (Ycf2 [Brassica nigra] >ASY93860.1 Ycf2 [Brassica nigra])

HSP 1 Score: 85.5 bits (210), Expect = 3.4e-13
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = 0


Query: 7   PIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPTPLN 50
           PIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKP  L+
Sbjct: 904 PIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPLLLD 946

[Close]

BLAST of Cla97C11G214270 vs. NCBI nr
Match: YP_009894841.1 (Ycf2 [Dithyrea californica] >YP_009894861.1 Ycf2 [Dithyrea californica] >QKK41301.1 Ycf2 [Dithyrea californica] >QKK41321.1 Ycf2 [Dithyrea californica])

HSP 1 Score: 85.5 bits (210), Expect = 3.4e-13
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = 0


Query: 7   PIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPTPLN 50
           PIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKP  L+
Sbjct: 898 PIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPFVLD 940

[Close]

BLAST of Cla97C11G214270 vs. NCBI nr
Match: YP_009730709.1 (Ycf2 [Sinapis alba] >YP_009730726.1 Ycf2 [Sinapis alba] >QHU78424.1 Ycf2 [Sinapis alba] >QHU78441.1 Ycf2 [Sinapis alba])

HSP 1 Score: 85.5 bits (210), Expect = 3.4e-13
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = 0


Query: 7   PIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPTPLN 50
           PIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKP  L+
Sbjct: 904 PIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPLLLD 946

[Close]

BLAST of Cla97C11G214270 vs. ExPASy Swiss-Prot
Match: A4QKX4 (Protein Ycf2 A OS=Crucihimalaya wallichii OX=78192 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.8e-16
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0


Query: 7   PIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKP 46
           PIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKP
Sbjct: 910 PIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKP 948

[Close]

BLAST of Cla97C11G214270 vs. ExPASy Swiss-Prot
Match: A4QKZ7 (Protein Ycf2 B OS=Crucihimalaya wallichii OX=78192 GN=ycf2-B PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.8e-16
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0


Query: 7   PIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKP 46
           PIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKP
Sbjct: 910 PIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKP 948

[Close]

BLAST of Cla97C11G214270 vs. ExPASy Swiss-Prot
Match: A4QJF8 (Protein Ycf2 OS=Aethionema cordifolium OX=434059 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.8e-16
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0


Query: 7   PIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKP 46
           PIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKP
Sbjct: 912 PIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKP 950

[Close]

BLAST of Cla97C11G214270 vs. ExPASy Swiss-Prot
Match: A4QJP2 (Protein Ycf2 OS=Aethionema grandiflorum OX=72657 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.8e-16
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0


Query: 7   PIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKP 46
           PIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKP
Sbjct: 903 PIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKP 941

[Close]

BLAST of Cla97C11G214270 vs. ExPASy Swiss-Prot
Match: A4QK61 (Protein Ycf2 OS=Arabis hirsuta OX=78191 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.8e-16
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0


Query: 7   PIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKP 46
           PIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKP
Sbjct: 910 PIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKP 948

[Close]

BLAST of Cla97C11G214270 vs. ExPASy TrEMBL
Match: A0A2P1FSY0 (Protein Ycf2 OS=Eurycorymbus cavaleriei OX=325641 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.6e-13
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = 0


Query: 7   PIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPTPLN 50
           PIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKP  L+
Sbjct: 904 PIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPLLLD 946

[Close]

BLAST of Cla97C11G214270 vs. ExPASy TrEMBL
Match: A0A6M8YUE0 (Protein Ycf2 OS=Dithyrea californica OX=980117 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.6e-13
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = 0


Query: 7   PIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPTPLN 50
           PIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKP  L+
Sbjct: 898 PIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPFVLD 940

[Close]

BLAST of Cla97C11G214270 vs. ExPASy TrEMBL
Match: A0A7G7XV85 (Protein Ycf2 OS=Acer stachyophyllum OX=171218 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.6e-13
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 6   SPIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKP 46
           +PIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKP
Sbjct: 896 TPIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKP 935

[Close]

BLAST of Cla97C11G214270 vs. ExPASy TrEMBL
Match: A0A6C0M7R2 (Protein Ycf2 OS=Sinapis alba OX=3728 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.6e-13
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = 0


Query: 7   PIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPTPLN 50
           PIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKP  L+
Sbjct: 904 PIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPLLLD 946

[Close]

BLAST of Cla97C11G214270 vs. ExPASy TrEMBL
Match: A0A218KGJ4 (Protein Ycf2 OS=Sinapis arvensis OX=29728 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.6e-13
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = 0


Query: 7   PIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPTPLN 50
           PIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKP  L+
Sbjct: 904 PIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPLLLD 946

[Close]

BLAST of Cla97C11G214270 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 85.1 bits (209), Expect = 4.1e-17
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0


Query: 7   PIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKP 46
           PIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKP
Sbjct: 908 PIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKP 946

[Close]

BLAST of Cla97C11G214270 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 85.1 bits (209), Expect = 4.1e-17
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0


Query: 7   PIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKP 46
           PIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKP
Sbjct: 908 PIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKP 946

The following BLAST results are available for this feature:

BLAST of Cla97C11G214270 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009476227.1	3.4e-13	93.02	Ycf2 [Eurycorymbus cavaleriei] >YP_009476249.1 Ycf2 [Eurycorymbus cavaleriei] >A...	[more]
QKY62328.1	3.4e-13	97.50	Ycf2 [Acer acuminatum] >QKY62350.1 Ycf2 [Acer acuminatum]	[more]
ASY93839.1	3.4e-13	93.02	Ycf2 [Brassica nigra] >ASY93860.1 Ycf2 [Brassica nigra]	[more]
YP_009894841.1	3.4e-13	93.02	Ycf2 [Dithyrea californica] >YP_009894861.1 Ycf2 [Dithyrea californica] >QKK4130...	[more]
YP_009730709.1	3.4e-13	93.02	Ycf2 [Sinapis alba] >YP_009730726.1 Ycf2 [Sinapis alba] >QHU78424.1 Ycf2 [Sinapi...	[more]

BLAST of Cla97C11G214270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4QKX4	5.8e-16	100.00	Protein Ycf2 A OS=Crucihimalaya wallichii OX=78192 GN=ycf2-A PE=3 SV=1	[more]
A4QKZ7	5.8e-16	100.00	Protein Ycf2 B OS=Crucihimalaya wallichii OX=78192 GN=ycf2-B PE=3 SV=1	[more]
A4QJF8	5.8e-16	100.00	Protein Ycf2 OS=Aethionema cordifolium OX=434059 GN=ycf2-A PE=3 SV=1	[more]
A4QJP2	5.8e-16	100.00	Protein Ycf2 OS=Aethionema grandiflorum OX=72657 GN=ycf2-A PE=3 SV=1	[more]
A4QK61	5.8e-16	100.00	Protein Ycf2 OS=Arabis hirsuta OX=78191 GN=ycf2-A PE=3 SV=1	[more]

BLAST of Cla97C11G214270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P1FSY0	1.6e-13	93.02	Protein Ycf2 OS=Eurycorymbus cavaleriei OX=325641 GN=ycf2 PE=3 SV=1	[more]
A0A6M8YUE0	1.6e-13	93.02	Protein Ycf2 OS=Dithyrea californica OX=980117 GN=ycf2 PE=3 SV=1	[more]
A0A7G7XV85	1.6e-13	97.50	Protein Ycf2 OS=Acer stachyophyllum OX=171218 GN=ycf2 PE=3 SV=1	[more]
A0A6C0M7R2	1.6e-13	93.02	Protein Ycf2 OS=Sinapis alba OX=3728 GN=ycf2 PE=3 SV=1	[more]
A0A218KGJ4	1.6e-13	93.02	Protein Ycf2 OS=Sinapis arvensis OX=29728 GN=ycf2 PE=3 SV=1	[more]

BLAST of Cla97C11G214270 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00860.1	4.1e-17	100.00	Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG01280.1	4.1e-17	100.00	Chloroplast Ycf2;ATPase, AAA type, core	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008543	Uncharacterised protein family Ycf2	PFAM	PF05695	DUF825	coord: 6..48 e-value: 3.7E-20 score: 70.9
None	No IPR available	PANTHER	PTHR33078:SF39	BNAA06G19300D PROTEIN	coord: 7..46
None	No IPR available	PANTHER	PTHR33078	PROTEIN YCF2-RELATED	coord: 7..46

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C11G214270.1	Cla97C11G214270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0003676	nucleic acid binding