Cla97C11G214220 (gene) Watermelon (97103) v2.5

Overview
NameCla97C11G214220
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionYcf15
LocationCla97Chr11: 7707199 .. 7709340 (-)
RNA-Seq ExpressionCla97C11G214220
SyntenyCla97C11G214220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTATGTATGAGAGGGCCGTAAAGGACTCTCTTGAGACAACTTTCGGGAGGCCAGTTCAGGCTTTCTTTAGAATTGTTACTGGTATACTGATTTTCGAATGCAATCCATTCGTATTTCATTCTTTTTTTCTTGCCTGAACTTTGCTCTTTTCTTCGACTGCTGCCCAAGAGGGTACTCTGGAGCAACGTTTGAACGCGCTCGACCTTGTTCACCCTTTCAGCTAAGTATCCCGCTCTTTCCTTGAGTAGACAACACAAAGAAGGTAGCCGTTCCATCATGAGGGAATGTCCCAGACTCTCCCAAGTCGTAAGCGAGAACATGCCCAATCTATCATAGCCAACTCGTTTGCTTCTATCGTCAAGCACTACTCAAAGGGACAGGGTAGATGCCGACATGAAGATCAATGGCACCTTCAACCGGTTCCTCGCTTCAACAACAATAAAACGTAAAAGTAACAGATCTCAATATTCGGAAGTGAAAAAGAAGCATCTCTTTTTTATTGATCCATGTCATGCATTACAATATCAGCTAGAAAAGAAAAGATGGGAATTCCTCAACCCGTATACTATTTCGAACAGCGACCAAAGTGGGCTTACTCGTATGCAGCCATTTTTGCTTCTTGCTCAGCAGCCTCCTTTCTTTCTGCGTCCTTAACTCGCCGATAGTTCTAGATCTGGGCCAAGACGAACTATTGTAGGGGATTTATTGAAACCATTGAATTCGGAATATGGTAAAGTGGCTCCTGGGTGGGGAACTACACCTTTAATGGGTGTCGCGATGGGTCTATTTGCGATATTCCTATGTATTATTTTGGAAATTTATAATTCTTCCATTTTACTGGACGGAATTTCAAGCAATTAGATTCGATTCACAAGAACCCATAAATAACTTTTCAATAAAAAGGAAAGTCTAAAGTATGTAGGTTTCCGCTTTTTAGCCCACTCTTTTTTGGTAGTTCGATCGTGGAATTTATTTTTTTTCTGTATTTCCGGAATATGAGTGTGTGACTTGTTAGAATTGATCCTATGGATACGCCATTAAAGGTGTAGTTCCCCACCCAGGAGCCACTTTACCATATTCCGAATTCAATGGTTTCAACAAATCCCCTACAATAGTTCGTCTTGGCCCAGATCTAGAACTATCGTCAACGGTTTGTGTAGCCATAAATAATCCTATATTTTTTTTTTAATTCAGTGAGATCTGTTGACTTTGTATACCATTCCGTTGTAAATAAATGATCTTATCATAGATCCATTGTGGTCTTGAAATTATATAATAATGAAAACAGCAACCCTAGTTGCCATCTCTATATCTGGTTTACTTGTAAGTTTTACTGGGTATGCCTTATATACTGCTTTTGGGCAACCCTCTCAACAAGTAAGAGATCCATTCGAGGAACACGGGGACTAGTTGAAGTAATGAGCCTCACAATATTGATACGGGCCTTTTCCACATAATCCACATAAAAAGGGAATCTTTTGTTACAATAGAAGCAGAAGTGATGTGGATTATTCAAGAATCGAAGACGATAGTGGAATGCCTATGCTTTATTCTTCTGAAGGTGGGAGAAAAGATAAAACTTATTTAATTATTCAGCAAAATTGAAGTTTGAAACTTATATAATTAACCTCTTTTGCTTAACTCGAGAAAAAAATGGGCTAGATCTATGAAAAATTTCATTCAATTAGATTAGATATGGTAAATTTTTTTAAATATGGGACAGCAAAAGAATTGACTGTTGAGCCGTATGAGGTAGGAAACTCTCAAGTACGGTTCTAAGGGAAGGAATTTACCTGCCTATTCCGACCGGGAGGCCTCAGATCGGAAGTGCTTTCGCTCTCAACTCTTGTTTCTTATGCCCGAAAACTAGAATCTCTCTGGTTCCATAGAATGAAAACCACTCTTTCCTTCCTTCCTAGAATAGTCCGCTTGTCATTGACTTCCATAAAAGAAGAAGAAATCGTATAGAACTCATATAACAAAGATAGAGGAAGACGTCTAAAGAAAAGAAAGACATTCAGTTGATGTACGGGGTCAACCGCCGAGCCCCCTTTCTCCTCGATCCACAGAGACAAAATGGAGGACTGGTGCCAACAGTTCATCACGGAAGAAAGGACTCACTGAGCCAAGATCACTAA

mRNA sequence

ATGGCTATGTATGAGAGGGCCGTAAAGGACTCTCTTGAGACAACTTTCGGGAGGCCAGTTCAGGCTTTCTTTAGAATTGTTACTGTGAGATCTGTTGACTTTGTATACCATTCCGTTAGGAAGACGTCTAAAGAAAAGAAAGACATTCAGTTGATGTACGGGGTCAACCGCCGAGCCCCCTTTCTCCTCGATCCACAGAGACAAAATGGAGGACTGGTGCCAACAGTTCATCACGGAAGAAAGGACTCACTGAGCCAAGATCACTAA

Coding sequence (CDS)

ATGGCTATGTATGAGAGGGCCGTAAAGGACTCTCTTGAGACAACTTTCGGGAGGCCAGTTCAGGCTTTCTTTAGAATTGTTACTGTGAGATCTGTTGACTTTGTATACCATTCCGTTAGGAAGACGTCTAAAGAAAAGAAAGACATTCAGTTGATGTACGGGGTCAACCGCCGAGCCCCCTTTCTCCTCGATCCACAGAGACAAAATGGAGGACTGGTGCCAACAGTTCATCACGGAAGAAAGGACTCACTGAGCCAAGATCACTAA

Protein sequence

MAMYERAVKDSLETTFGRPVQAFFRIVTVRSVDFVYHSVRKTSKEKKDIQLMYGVNRRAPFLLDPQRQNGGLVPTVHHGRKDSLSQDH
Homology
[Close]
BLAST of Cla97C11G214220 vs. NCBI nr
Match: QZL38640.1 (Ycf15 protein [Citrullus naudinianus] >QZL38654.1 Ycf15 protein [Citrullus naudinianus])

HSP 1 Score: 73.6 bits (179), Expect = 9.8e-10
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 51 LMYGVNRRAPFLLDPQRQNGGLVPTVHHGRKDSLSQDH 89
          ++   +RRAPFLLDPQRQNGGLVPTVHHGRKDSLSQDH
Sbjct: 26 MLQSSSRRAPFLLDPQRQNGGLVPTVHHGRKDSLSQDH 63

[Close]
BLAST of Cla97C11G214220 vs. NCBI nr
Match: YP_009326036.1 (Ycf15 [Citrullus lanatus] >YP_009326049.1 Ycf15 [Citrullus lanatus] >YP_009348078.1 Ycf15 [Citrullus mucosospermus] >YP_009348091.1 Ycf15 [Citrullus mucosospermus] >YP_009431603.1 Ycf15 [Citrullus amarus] >YP_009431616.1 Ycf15 [Citrullus amarus] >YP_009447497.1 Ycf15 [Cucurbita maxima] >YP_009447510.1 Ycf15 [Cucurbita maxima] >YP_009447582.1 Ycf15 [Cucurbita moschata] >YP_009447595.1 Ycf15 [Cucurbita moschata] >YP_009456107.1 Ycf15 [Momordica charantia] >YP_009456121.1 Ycf15 [Momordica charantia] >YP_009456192.1 Ycf15 [Lagenaria siceraria] >YP_009456206.1 Ycf15 [Lagenaria siceraria] >YP_009674437.1 Ycf15 [Siraitia grosvenorii] >YP_009674450.1 Ycf15 [Siraitia grosvenorii] >YP_009738249.1 Ycf15 [Siraitia siamensis] >YP_009738262.1 Ycf15 [Siraitia siamensis] >ALO21733.1 hypothetical protein [Cucurbita argyrosperma] >ALO21782.1 hypothetical protein [Cucurbita argyrosperma var. palmeri] >ALO21845.1 hypothetical protein [Cucurbita argyrosperma subsp. sororia] >ALO21907.1 hypothetical protein [Cucurbita cordata] >ALO21967.1 hypothetical protein [Cucurbita digitata] >ALO22071.1 hypothetical protein [Cucurbita ecuadorensis] >ALO22103.1 hypothetical protein [Cucurbita ficifolia] >ALO22165.1 hypothetical protein [Cucurbita foetidissima] >ALO22290.1 hypothetical protein [Cucurbita maxima subsp. andreana] >ALO22561.1 hypothetical protein [Cucurbita pepo subsp. fraterna] >ALO22624.1 hypothetical protein [Cucurbita pepo subsp. ovifera] >ALO22673.1 hypothetical protein [Cucurbita pepo var. ozarkana] >ALO22800.1 hypothetical protein [Cucurbita pepo var. texana] >ALO22884.1 hypothetical protein [Cucurbita pedatifolia] >APW82509.1 Ycf15 [Citrullus lanatus subsp. vulgaris] >QJD26341.1 Ycf15 [Trichosanthes kirilowii] >QJD26516.1 Ycf15 [Trichosanthes kirilowii var. japonica] >QJD26690.1 Ycf15 [Trichosanthes rosthornii] >QKX48521.1 Ycf15-like protein [Luffa acutangula] >QKX48607.1 Ycf15-like protein [Luffa aegyptiaca] >QNM38578.1 hypothetical protein [Lagenaria siceraria var. microcarpa] >QZL38728.1 Ycf15 protein [Citrullus ecirrhosus])

HSP 1 Score: 72.0 bits (175), Expect = 2.9e-09
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 51 LMYGVNRRAPFLLDPQRQNGGLVPTVHHGRKDSLSQDH 89
          ++   +RRAPFLLDPQRQNGGLVPTVHHGRKDSLS+DH
Sbjct: 26 MLQSSSRRAPFLLDPQRQNGGLVPTVHHGRKDSLSRDH 63

[Close]
BLAST of Cla97C11G214220 vs. NCBI nr
Match: YP_009430673.1 (ORF70 [Gynostemma cardiospermum] >YP_009430687.1 ORF70 [Gynostemma cardiospermum] >YP_009439850.1 ORF70 [Gynostemma laxiflorum] >YP_009439864.1 ORF70 [Gynostemma laxiflorum] >YP_009440024.1 ORF70 [Gynostemma pentagynum] >YP_009440038.1 ORF70 [Gynostemma pentagynum] >YP_009440203.1 ORF70 [Gynostemma longipes] >YP_009440217.1 ORF70 [Gynostemma longipes] >YP_009440290.1 ORF70 [Gynostemma burmanicum (nom. inval.)] >YP_009440304.1 ORF70 [Gynostemma burmanicum (nom. inval.)] >YP_009440377.1 ORF70 [Gynostemma pubescens] >YP_009440391.1 ORF70 [Gynostemma pubescens] >YP_010015185.1 ORF70 [Gynostemma yixingense] >YP_010015199.1 ORF70 [Gynostemma yixingense] >ANI25230.1 ORF70 [Gynostemma pentaphyllum] >ANI25243.1 ORF70 [Gynostemma pentaphyllum] >ART65027.1 ORF70 [Gynostemma pentaphyllum] >ART65028.1 ORF70 [Gynostemma pentaphyllum] >ART65114.1 ORF70 [Gynostemma cardiospermum])

HSP 1 Score: 72.0 bits (175), Expect = 2.9e-09
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 51 LMYGVNRRAPFLLDPQRQNGGLVPTVHHGRKDSLSQDH 89
          ++   +RRAPFLLDPQRQNGGLVPTVHHGRKDSLS+DH
Sbjct: 26 MLQSSSRRAPFLLDPQRQNGGLVPTVHHGRKDSLSRDH 63

[Close]
BLAST of Cla97C11G214220 vs. NCBI nr
Match: YP_009526348.1 (ORF70 [Hemsleya lijiangensis] >YP_009526362.1 hypothetical protein [Hemsleya lijiangensis] >YP_010119780.1 hypothetical protein KQ497_pgp019 [Hemsleya zhejiangensis] >YP_010119793.1 hypothetical protein KQ497_pgp006 [Hemsleya zhejiangensis] >AXU40542.1 ORF70 [Hemsleya lijiangensis] >AXU40543.1 hypothetical protein [Hemsleya lijiangensis] >QRC26890.1 hypothetical protein [Hemsleya zhejiangensis] >QRC26891.1 hypothetical protein [Hemsleya zhejiangensis])

HSP 1 Score: 71.6 bits (174), Expect = 3.7e-09
Identity = 37/67 (55.22%), Postives = 46/67 (68.66%), Query Frame = 0 

Query: 22 AFFRIVTVRSVDFVYHSVRKTSKEKKDIQLMYGVNRRAPFLLDPQRQNGGLVPTVHHGRK 81
          A   +V ++ VDF+   + ++S            +RRAPFLLDPQRQNGGLVPTVHHGRK
Sbjct: 9  ARIHVVYLKEVDFLASLMLQSS------------SRRAPFLLDPQRQNGGLVPTVHHGRK 63

Query: 82 DSLSQDH 89
          DSLS+DH
Sbjct: 69 DSLSRDH 63

[Close]
BLAST of Cla97C11G214220 vs. NCBI nr
Match: YP_009505126.1 (Ycf15 [Cucurbita pepo] >YP_009505139.1 Ycf15 [Cucurbita pepo] >ALO22743.1 hypothetical protein [Cucurbita pepo subsp. pepo] >ALO22795.1 hypothetical protein [Cucurbita pepo subsp. pepo] >AWX90418.1 Ycf15 [Cucurbita pepo] >AWX90419.1 Ycf15 [Cucurbita pepo])

HSP 1 Score: 71.2 bits (173), Expect = 4.9e-09
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = 0 

Query: 56 NRRAPFLLDPQRQNGGLVPTVHHGRKDSLSQDH 89
          +RRAPFLLDPQRQNGGLVPTVHHGRKDSLS+DH
Sbjct: 31 SRRAPFLLDPQRQNGGLVPTVHHGRKDSLSRDH 63

[Close]
BLAST of Cla97C11G214220 vs. ExPASy TrEMBL
Match: A0A2H4T240 (Ycf15 OS=Cucurbita maxima OX=3661 GN=ycf15 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.4e-09
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 51 LMYGVNRRAPFLLDPQRQNGGLVPTVHHGRKDSLSQDH 89
          ++   +RRAPFLLDPQRQNGGLVPTVHHGRKDSLS+DH
Sbjct: 26 MLQSSSRRAPFLLDPQRQNGGLVPTVHHGRKDSLSRDH 63

[Close]
BLAST of Cla97C11G214220 vs. ExPASy TrEMBL
Match: A0A6M3S757 (Ycf15 OS=Trichosanthes rosthornii OX=676073 GN=ycf15 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.4e-09
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 51 LMYGVNRRAPFLLDPQRQNGGLVPTVHHGRKDSLSQDH 89
          ++   +RRAPFLLDPQRQNGGLVPTVHHGRKDSLS+DH
Sbjct: 26 MLQSSSRRAPFLLDPQRQNGGLVPTVHHGRKDSLSRDH 63

[Close]
BLAST of Cla97C11G214220 vs. ExPASy TrEMBL
Match: A0A0S2IGC5 (Uncharacterized protein OS=Cucurbita pepo subsp. ovifera OX=184141 GN=orf70 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.4e-09
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 51 LMYGVNRRAPFLLDPQRQNGGLVPTVHHGRKDSLSQDH 89
          ++   +RRAPFLLDPQRQNGGLVPTVHHGRKDSLS+DH
Sbjct: 26 MLQSSSRRAPFLLDPQRQNGGLVPTVHHGRKDSLSRDH 63

[Close]
BLAST of Cla97C11G214220 vs. ExPASy TrEMBL
Match: A0A6M3RTI4 (Ycf15 OS=Trichosanthes kirilowii OX=3677 GN=ycf15 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.4e-09
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 51 LMYGVNRRAPFLLDPQRQNGGLVPTVHHGRKDSLSQDH 89
          ++   +RRAPFLLDPQRQNGGLVPTVHHGRKDSLS+DH
Sbjct: 26 MLQSSSRRAPFLLDPQRQNGGLVPTVHHGRKDSLSRDH 63

[Close]
BLAST of Cla97C11G214220 vs. ExPASy TrEMBL
Match: A0A7G9IT84 (Uncharacterized protein OS=Lagenaria siceraria var. microcarpa OX=2726058 GN=ycf15 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.4e-09
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 51 LMYGVNRRAPFLLDPQRQNGGLVPTVHHGRKDSLSQDH 89
          ++   +RRAPFLLDPQRQNGGLVPTVHHGRKDSLS+DH
Sbjct: 26 MLQSSSRRAPFLLDPQRQNGGLVPTVHHGRKDSLSRDH 63

The following BLAST results are available for this feature:
BLAST of Cla97C11G214220 vs. NCBI nr
Match NameE-valueIdentityDescription
QZL38640.19.8e-1084.21Ycf15 protein [Citrullus naudinianus] >QZL38654.1 Ycf15 protein [Citrullus naudi... [more]
YP_009326036.12.9e-0981.58Ycf15 [Citrullus lanatus] >YP_009326049.1 Ycf15 [Citrullus lanatus] >YP_00934807... [more]
YP_009430673.12.9e-0981.58ORF70 [Gynostemma cardiospermum] >YP_009430687.1 ORF70 [Gynostemma cardiospermum... [more]
YP_009526348.13.7e-0955.22ORF70 [Hemsleya lijiangensis] >YP_009526362.1 hypothetical protein [Hemsleya lij... [more]
YP_009505126.14.9e-0993.94Ycf15 [Cucurbita pepo] >YP_009505139.1 Ycf15 [Cucurbita pepo] >ALO22743.1 hypoth... [more]
BLAST of Cla97C11G214220 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cla97C11G214220 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2H4T2401.4e-0981.58Ycf15 OS=Cucurbita maxima OX=3661 GN=ycf15 PE=4 SV=1[more]
A0A6M3S7571.4e-0981.58Ycf15 OS=Trichosanthes rosthornii OX=676073 GN=ycf15 PE=4 SV=1[more]
A0A0S2IGC51.4e-0981.58Uncharacterized protein OS=Cucurbita pepo subsp. ovifera OX=184141 GN=orf70 PE=4... [more]
A0A6M3RTI41.4e-0981.58Ycf15 OS=Trichosanthes kirilowii OX=3677 GN=ycf15 PE=4 SV=1[more]
A0A7G9IT841.4e-0981.58Uncharacterized protein OS=Lagenaria siceraria var. microcarpa OX=2726058 GN=ycf... [more]
BLAST of Cla97C11G214220 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 66..88

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C11G214220.1Cla97C11G214220.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0009507 chloroplast