Cla97C11G214090 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C11G214090
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	Photosystem II D2 protein
Location	Cla97Chr11: 7650329 .. 7653148 (-)
RNA-Seq Expression	Cla97C11G214090
Synteny	Cla97C11G214090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGGAAACCGCCGGAAACTCGAGAGGGTCGCCTTTGGAAGCGTTCGCCGGTAACCAAAGCGTCACAACATAATAAAAAGGAATGAGTTTAGCTGACTGAATCCAATCCATAAACCCGGAAACGAAACAAAGTGCGTTCCCTTTCGTCAAGTAGGTCAAAAAATAGGTATACGAACCACTTTTGCTTTGCCTTAGACTCGATTGGAACAAAGCTAAGAAAGAAGGAGGCGGAATGGAGAAAGGAAAGGGACCTAAACCATTTGCCTGGGCTCGCCGCGCACTTGTATGGTCTGGAGAAGCTTACTTGTCTTATAGTTTAGGTGCTTTATCTGTTTTTGGTTTTATTGCTTGTTGTTTTGTCGCCGGAGACAAGAGAATGGAAGGTATCTTTTTCAAGAGCATGCCTTAACTTAATTATTAATTAATAGGTTTTCAAAAGGCGTAGACTTTCTAAGTGAAGGCAAGCGCAACGAGATATTTCATATCCTCCCTGTCAGCAAGGCAGGTCCGAAGAGATGCCACAGGAGAATGGAATAAGTAGGAGAATTGTAGCCGACCTCTTAAGTAACATAGCGCAACTCAACGAAAGGAAATGAAAATGTTTGCGTATTCAGATGTGAAATGAACGGAATGAGTTAGCCCGACCTCAGGTTACCGGACACGTAGGGCACTGGCCTTGCTTTGCCCACCAACGACTTTCCGCTTGGGAAATACACAACCACCTTTTCTGGAGCAGGAACCTGAACGAGCGCAACAACTGGCGCCTTTTCATACAAGTTTCTTCTTTTTATTCTAACAAAGCAAATAGCATTTCCTATTGATTTGTCCCCTGGACTGGACCTATTCTTCTTCTTAATTATCTGTCGCTACGCTGTTCCCAAGGACTAGCAAAATCGAGAATTCCCTTCAACTATTATTGAAAACTAACGAATCAAATTTCGTGGAGTTGAAGGGAAATATCCAAATACATGTCTTATTTTTCAATAATCCATATTTGCAGCAATGAAATACTCTTCTTCCTCCCCCGAGTAATCATAAATAACTAACTACAAATCTATGATTGCCCCATTAACGAAAAAGAAAAAATCAAAAGATAAGGCCATTCCATTTCGACAAAAGACCCACACCCAAGTTCCATAGCTTTGGGTCCGCTATCCCGATCATGATTTTCCTACCCCCAGAGGGAAAAGTCCTTCCCTTTTTGGCCGGGCTGGGCCCGCGGATGTACCCACTGAAGCTGGTGCCCCTGCTGCAATCACATCTGGGTTATTGTTATTTTCAGGGGCTGGGCCCGCGGTCGGGCCCCCCCGGAAGGGGGCCTTCTTCGCCTTCCACCTAAGCTGCGCAGGAAAGGCCCAAAGCCAATCCCAGGGAACAGTGAAGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTTGAAAAGAGATTTGAACAGCAGTCTGAAAAGACTAATGCTGCGCAAAAGAATATGTTTCTAAAAAAGAATAAGCACAAAGTGAGTGCAGAAGGACCTGAAAAACATAGAGTGTTGGTCCAAACATTCTTATCTAGGCCCGACCCCTATCCTCTAGTGTTGGTTGTGGGAAAGACTCTTTTCAATTGGCATTCCCGATCCCTATTGAAAAAGAAAACCAGTAAGCTTTGCAGTTAGAACCCAGTAGGTAGCTAGAGCGGGGCAAGCTTTCTTCAAGTCCCTCCGAGGACGACTCCCATACAATTCTTGCGAGAGCTGGAGAAGCGTCTACGGGTAAAGCACCGTATCCATATAACAGCTTGCCACCTACGCTCCGCCATCCATTCAAACTTTAGGAACCTAGGTAATAGTATCCCGATCAAAGAGCTGACGAAGGGGATGAGCCAAACAGGGAGTCTACTGGACGGGGTTCAACTAGCGGAGACTCTTGGAACTGCTGGAGTAAGAAGTCCCCAAGTGAGCGTATTATGGGGGACCGTCAAGCACATCCGGCAAGGATCAAGGGGGATCTCGTTGTTGCATAGCTCAGGTCGTAGCAACGCGGGTATATCTCAGTATGGAGGATGAGACCAAAGATCTGTATTTATTTATAAACTCTCCCGGTGGATGGGTACTACCCGGAATAGCTATTTATGATACTATGCAATTTGTGCGACCAGATGTACAGACAGTATGCATGGGATTAGCCGCTTCAATGGGATCTTTTATTCTGTCCGGAGGAAAAATTACCAAACGTCTAGCATTCCCTCACGCTCGGCGCCAATGAGTTTTTTTTTTTTTTTGAGACAAAAAAGAAAACTATGCCTTCGCCATATAAAATATGAATATTTAAGTAATAATAGCATGGCACTTTGAATTCGATATGAGAATTTTTTTCTTGTTTTTTTTTCTAAACCATTAGGTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACCTTATTTGAGGATGGGGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTATACCAAAAATATTCTCTTAAACGAAGGTATTCGTGTGGCGCTGTGCGTATCGACCCGTGCAGTGCTGTAG

mRNA sequence

ATGACGGAAACCGCCGGAAACTCGAGAGGGTCGCCTTTGGAAGCGTTCGCCGCTAAGAAAGAAGGAGGCGGAATGGAGAAAGGAAAGGGACCTAAACCATTTGCCTGGGCTCGCCGCGCACTTGTATGGTCTGGAGAAGCTTACTTGTCTTATAGTTTAGGTGCTTTATCTGTTTTTGGTTTTATTGCTTGTTGTTTTGTCGCCGGAGACAAGAGAATGGAAGCCCGACCTCAGGTTACCGGACACGTAGGGCACTGGCCTTGCTTTGCCCACCAACGACTTTCCGCTTGGGAAATACACAACCACCTTTTCTGGAGCAGGAACCTGAACGAGCGCAACAACTGGCGCCTTTTCATACAACTTTGGGTCCGCTATCCCGATCATGATTTTCCTACCCCCAGAGGGAAAAGTCCTTCCCTTTTTGGCCGGGCTGGGCCCGCGGATGTACCCACTGAAGCTGGTGCCCCTGCTGCAATCACATCTGGGTTATTGTTATTTTCAGGGGCTGGGCCCGCGGTCGGGCCCCCCCGGAAGGGGGCCTTCTTCGCCTTCCACCTAAGCTGCGCAGGAAAGGCCCAAAGCCAATCCCAGGGAACAGTGAAGCTTCATAGGGTCTTTCTGTCCAGGCCCGACCCCTATCCTCTAGTGTTGGTTGTGGGAAAGACTCTTTTCAATTGGCATTCCCGATCCCTATTGAAAAAGAAAACCACTTGCCACCTACGCTCCGCCATCCATTCAAACTTTAGGAACCTAGGTAATAGTATCCCGATCAAAGAGCTGACGAAGGGGATGAGCCAAACAGGGAGTCTACTGGACGGGGTTCAACTAGCGGAGACTCTTGGAACTGCTGGAGTAAGAAGTCCCCAAGTGAGCGTATTATGGGGGACCGTCAAGCACATCCGGCAAGGATCAAGGGGGATCTCGTTGTTGCATAGCTCAGGTCGTAGCAACGCGGGTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACCTTATTTGAGGATGGGGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTATACCAAAAATATTCTCTTAAACGAAGGTATTCGTGTGGCGCTGTGCGTATCGACCCGTGCAGTGCTGTAG

Coding sequence (CDS)

ATGACGGAAACCGCCGGAAACTCGAGAGGGTCGCCTTTGGAAGCGTTCGCCGCTAAGAAAGAAGGAGGCGGAATGGAGAAAGGAAAGGGACCTAAACCATTTGCCTGGGCTCGCCGCGCACTTGTATGGTCTGGAGAAGCTTACTTGTCTTATAGTTTAGGTGCTTTATCTGTTTTTGGTTTTATTGCTTGTTGTTTTGTCGCCGGAGACAAGAGAATGGAAGCCCGACCTCAGGTTACCGGACACGTAGGGCACTGGCCTTGCTTTGCCCACCAACGACTTTCCGCTTGGGAAATACACAACCACCTTTTCTGGAGCAGGAACCTGAACGAGCGCAACAACTGGCGCCTTTTCATACAACTTTGGGTCCGCTATCCCGATCATGATTTTCCTACCCCCAGAGGGAAAAGTCCTTCCCTTTTTGGCCGGGCTGGGCCCGCGGATGTACCCACTGAAGCTGGTGCCCCTGCTGCAATCACATCTGGGTTATTGTTATTTTCAGGGGCTGGGCCCGCGGTCGGGCCCCCCCGGAAGGGGGCCTTCTTCGCCTTCCACCTAAGCTGCGCAGGAAAGGCCCAAAGCCAATCCCAGGGAACAGTGAAGCTTCATAGGGTCTTTCTGTCCAGGCCCGACCCCTATCCTCTAGTGTTGGTTGTGGGAAAGACTCTTTTCAATTGGCATTCCCGATCCCTATTGAAAAAGAAAACCACTTGCCACCTACGCTCCGCCATCCATTCAAACTTTAGGAACCTAGGTAATAGTATCCCGATCAAAGAGCTGACGAAGGGGATGAGCCAAACAGGGAGTCTACTGGACGGGGTTCAACTAGCGGAGACTCTTGGAACTGCTGGAGTAAGAAGTCCCCAAGTGAGCGTATTATGGGGGACCGTCAAGCACATCCGGCAAGGATCAAGGGGGATCTCGTTGTTGCATAGCTCAGGTCGTAGCAACGCGGGTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACCTTATTTGAGGATGGGGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTATACCAAAAATATTCTCTTAAACGAAGGTATTCGTGTGGCGCTGTGCGTATCGACCCGTGCAGTGCTGTAG

Protein sequence

MTETAGNSRGSPLEAFAAKKEGGGMEKGKGPKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVAGDKRMEARPQVTGHVGHWPCFAHQRLSAWEIHNHLFWSRNLNERNNWRLFIQLWVRYPDHDFPTPRGKSPSLFGRAGPADVPTEAGAPAAITSGLLLFSGAGPAVGPPRKGAFFAFHLSCAGKAQSQSQGTVKLHRVFLSRPDPYPLVLVVGKTLFNWHSRSLLKKKTTCHLRSAIHSNFRNLGNSIPIKELTKGMSQTGSLLDGVQLAETLGTAGVRSPQVSVLWGTVKHIRQGSRGISLLHSSGRSNAGLLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRVALCVSTRAVL

Homology

[Close]

BLAST of Cla97C11G214090 vs. NCBI nr
Match: OMP01689.1 (Photosynthetic reaction centre, L/M [Corchorus capsularis])

HSP 1 Score: 250.8 bits (639), Expect = 2.3e-62
Identity = 143/235 (60.85%), Postives = 160/235 (68.09%), Query Frame = 0


Query: 241 RSAIHSNFRNLGNSIP------IKELTKGMSQTGSLLDGVQLAETLGTAGVRSPQVS--- 300
           R+++H+N      ++P      ++E   G SQ GS L+G        TA V +P  S   
Sbjct: 39  RASLHTNKLKSDLAVPDPQALTLREEWNGTSQLGSYLEGCNFL----TAAVSTPANSLSH 98

Query: 301 ---VLWGTVKHIRQG-----SRGIS---------------------LLHSSGRSNAGLLC 360
              +LWG     + G     S G++                     ++  +G   A LLC
Sbjct: 99  SLLLLWGPEAQGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMEVAGVLGAALLC 158

Query: 361 AIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFM 420
           AIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFM
Sbjct: 159 AIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFM 218

Query: 421 LFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIR 438
           LFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIR
Sbjct: 219 LFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIR 269

[Close]

BLAST of Cla97C11G214090 vs. NCBI nr
Match: QUV76072.1 (photosystem II protein D2 [Allium plurifoliatum])

HSP 1 Score: 245.7 bits (626), Expect = 7.4e-61
Identity = 121/131 (92.37%), Postives = 124/131 (94.66%), Query Frame = 0


Query: 307 ISLLHSSGRSNAGLLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQ 366
           I ++  +G   A LLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQ
Sbjct: 267 IHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQ 326

Query: 367 IFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFY 426
           IFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFY
Sbjct: 327 IFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFY 386

Query: 427 TKNILLNEGIR 438
           TKNILLNEGIR
Sbjct: 387 TKNILLNEGIR 397

[Close]

BLAST of Cla97C11G214090 vs. NCBI nr
Match: ANS11014.1 (photosystem II protein D2 [Euphronia guianensis])

HSP 1 Score: 245.7 bits (626), Expect = 7.4e-61
Identity = 120/131 (91.60%), Postives = 125/131 (95.42%), Query Frame = 0


Query: 307 ISLLHSSGRSNAGLLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQ 366
           ++++  +G   A LLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQ
Sbjct: 197 LNMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQ 256

Query: 367 IFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFY 426
           IFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFY
Sbjct: 257 IFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFY 316

Query: 427 TKNILLNEGIR 438
           TKNILLNEGIR
Sbjct: 317 TKNILLNEGIR 327

[Close]

BLAST of Cla97C11G214090 vs. NCBI nr
Match: AVY52546.1 (PsbD [Chimaphila japonica])

HSP 1 Score: 245.4 bits (625), Expect = 9.6e-61
Identity = 121/130 (93.08%), Postives = 123/130 (94.62%), Query Frame = 0


Query: 313 SGRSNAGLLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAF 372
           +G   A LLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAF
Sbjct: 203 AGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAF 262

Query: 373 SNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILL 432
           SNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILL
Sbjct: 263 SNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILL 322

Query: 433 NEGIRVALCV 443
           NEGIR  + V
Sbjct: 323 NEGIRAWMAV 332

[Close]

BLAST of Cla97C11G214090 vs. NCBI nr
Match: AWI69958.1 (photosystem II protein D2 [Macropharynx renteriae])

HSP 1 Score: 245.4 bits (625), Expect = 9.6e-61
Identity = 121/130 (93.08%), Postives = 123/130 (94.62%), Query Frame = 0


Query: 313 SGRSNAGLLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAF 372
           +G   A LLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAF
Sbjct: 203 AGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAF 262

Query: 373 SNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILL 432
           SNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILL
Sbjct: 263 SNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILL 322

Query: 433 NEGIRVALCV 443
           NEGIR  + V
Sbjct: 323 NEGIRAWMAV 332

[Close]

BLAST of Cla97C11G214090 vs. ExPASy Swiss-Prot
Match: Q4FFP4 (Photosystem II D2 protein OS=Acorus americanus OX=263995 GN=psbD PE=3 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.1e-63
Identity = 120/125 (96.00%), Postives = 121/125 (96.80%), Query Frame = 0


Query: 313 SGRSNAGLLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAF 372
           +G   A LLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAF
Sbjct: 203 AGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAF 262

Query: 373 SNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILL 432
           SNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILL
Sbjct: 263 SNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILL 322

Query: 433 NEGIR 438
           NEGIR
Sbjct: 323 NEGIR 327

[Close]

BLAST of Cla97C11G214090 vs. ExPASy Swiss-Prot
Match: Q3V539 (Photosystem II D2 protein OS=Acorus calamus OX=4465 GN=psbD PE=3 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.1e-63
Identity = 120/125 (96.00%), Postives = 121/125 (96.80%), Query Frame = 0


Query: 313 SGRSNAGLLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAF 372
           +G   A LLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAF
Sbjct: 203 AGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAF 262

Query: 373 SNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILL 432
           SNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILL
Sbjct: 263 SNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILL 322

Query: 433 NEGIR 438
           NEGIR
Sbjct: 323 NEGIR 327

[Close]

BLAST of Cla97C11G214090 vs. ExPASy Swiss-Prot
Match: A4QJB0 (Photosystem II D2 protein OS=Aethionema cordifolium OX=434059 GN=psbD PE=3 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.1e-63
Identity = 120/125 (96.00%), Postives = 121/125 (96.80%), Query Frame = 0


Query: 313 SGRSNAGLLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAF 372
           +G   A LLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAF
Sbjct: 203 AGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAF 262

Query: 373 SNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILL 432
           SNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILL
Sbjct: 263 SNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILL 322

Query: 433 NEGIR 438
           NEGIR
Sbjct: 323 NEGIR 327

[Close]

BLAST of Cla97C11G214090 vs. ExPASy Swiss-Prot
Match: A4QJJ4 (Photosystem II D2 protein OS=Aethionema grandiflorum OX=72657 GN=psbD PE=3 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.1e-63
Identity = 120/125 (96.00%), Postives = 121/125 (96.80%), Query Frame = 0


Query: 313 SGRSNAGLLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAF 372
           +G   A LLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAF
Sbjct: 203 AGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAF 262

Query: 373 SNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILL 432
           SNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILL
Sbjct: 263 SNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILL 322

Query: 433 NEGIR 438
           NEGIR
Sbjct: 323 NEGIR 327

[Close]

BLAST of Cla97C11G214090 vs. ExPASy Swiss-Prot
Match: Q70Y08 (Photosystem II D2 protein OS=Amborella trichopoda OX=13333 GN=psbD PE=3 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.1e-63
Identity = 120/125 (96.00%), Postives = 121/125 (96.80%), Query Frame = 0


Query: 313 SGRSNAGLLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAF 372
           +G   A LLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAF
Sbjct: 203 AGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAF 262

Query: 373 SNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILL 432
           SNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILL
Sbjct: 263 SNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILL 322

Query: 433 NEGIR 438
           NEGIR
Sbjct: 323 NEGIR 327

[Close]

BLAST of Cla97C11G214090 vs. ExPASy TrEMBL
Match: A0A1R3K3M0 (Photosynthetic reaction centre, L/M OS=Corchorus capsularis OX=210143 GN=CCACVL1_03030 PE=3 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.1e-62
Identity = 143/235 (60.85%), Postives = 160/235 (68.09%), Query Frame = 0


Query: 241 RSAIHSNFRNLGNSIP------IKELTKGMSQTGSLLDGVQLAETLGTAGVRSPQVS--- 300
           R+++H+N      ++P      ++E   G SQ GS L+G        TA V +P  S   
Sbjct: 39  RASLHTNKLKSDLAVPDPQALTLREEWNGTSQLGSYLEGCNFL----TAAVSTPANSLSH 98

Query: 301 ---VLWGTVKHIRQG-----SRGIS---------------------LLHSSGRSNAGLLC 360
              +LWG     + G     S G++                     ++  +G   A LLC
Sbjct: 99  SLLLLWGPEAQGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMEVAGVLGAALLC 158

Query: 361 AIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFM 420
           AIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFM
Sbjct: 159 AIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFM 218

Query: 421 LFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIR 438
           LFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIR
Sbjct: 219 LFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIR 269

[Close]

BLAST of Cla97C11G214090 vs. ExPASy TrEMBL
Match: A0A1C8QF76 (Photosystem II D2 protein OS=Euphronia guianensis OX=82261 GN=psbD PE=3 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 3.6e-61
Identity = 120/131 (91.60%), Postives = 125/131 (95.42%), Query Frame = 0


Query: 307 ISLLHSSGRSNAGLLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQ 366
           ++++  +G   A LLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQ
Sbjct: 197 LNMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQ 256

Query: 367 IFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFY 426
           IFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFY
Sbjct: 257 IFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFY 316

Query: 427 TKNILLNEGIR 438
           TKNILLNEGIR
Sbjct: 317 TKNILLNEGIR 327

[Close]

BLAST of Cla97C11G214090 vs. ExPASy TrEMBL
Match: A0A2R4QIT5 (Photosystem II D2 protein OS=Chimaphila japonica OX=638623 GN=psbD PE=3 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 4.7e-61
Identity = 121/130 (93.08%), Postives = 123/130 (94.62%), Query Frame = 0


Query: 313 SGRSNAGLLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAF 372
           +G   A LLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAF
Sbjct: 203 AGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAF 262

Query: 373 SNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILL 432
           SNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILL
Sbjct: 263 SNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILL 322

Query: 433 NEGIRVALCV 443
           NEGIR  + V
Sbjct: 323 NEGIRAWMAV 332

[Close]

BLAST of Cla97C11G214090 vs. ExPASy TrEMBL
Match: A0A1B1CZP4 (Photosystem II D2 protein OS=Pyrola rotundifolia OX=13651 GN=psbD PE=3 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 4.7e-61
Identity = 121/130 (93.08%), Postives = 123/130 (94.62%), Query Frame = 0


Query: 313 SGRSNAGLLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAF 372
           +G   A LLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAF
Sbjct: 203 AGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAF 262

Query: 373 SNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILL 432
           SNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILL
Sbjct: 263 SNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILL 322

Query: 433 NEGIRVALCV 443
           NEGIR  + V
Sbjct: 323 NEGIRAWMAV 332

[Close]

BLAST of Cla97C11G214090 vs. ExPASy TrEMBL
Match: A0A1B0ZEU5 (Photosystem II D2 protein OS=Orthilia secunda OX=93819 GN=psbD PE=3 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 4.7e-61
Identity = 121/130 (93.08%), Postives = 123/130 (94.62%), Query Frame = 0


Query: 313 SGRSNAGLLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAF 372
           +G   A LLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAF
Sbjct: 203 AGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAF 262

Query: 373 SNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILL 432
           SNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILL
Sbjct: 263 SNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILL 322

Query: 433 NEGIRVALCV 443
           NEGIR  + V
Sbjct: 323 NEGIRAWMAV 332

[Close]

BLAST of Cla97C11G214090 vs. TAIR 10
Match: ATCG00270.1 (photosystem II reaction center protein D )

HSP 1 Score: 244.6 bits (623), Expect = 1.5e-64
Identity = 120/125 (96.00%), Postives = 121/125 (96.80%), Query Frame = 0


Query: 313 SGRSNAGLLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAF 372
           +G   A LLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAF
Sbjct: 203 AGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAF 262

Query: 373 SNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILL 432
           SNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILL
Sbjct: 263 SNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILL 322

Query: 433 NEGIR 438
           NEGIR
Sbjct: 323 NEGIR 327

[Close]

BLAST of Cla97C11G214090 vs. TAIR 10
Match: ATMG00520.1 (Intron maturase, type II family protein )

HSP 1 Score: 153.3 bits (386), Expect = 4.6e-37
Identity = 80/113 (70.80%), Postives = 87/113 (76.99%), Query Frame = 0


Query: 236 TTCHLRSAIHSNFRNLGNSIPIKELTKGMSQTGSLLDGVQLAETLGTAGVRSPQVSVLWG 295
           T CHLRSAIHS FRNLG+SIPIK+LTKGMS+TGSL DGVQLAETLGTAGVRSPQVSVLWG
Sbjct: 405 TACHLRSAIHSKFRNLGDSIPIKQLTKGMSKTGSLQDGVQLAETLGTAGVRSPQVSVLWG 464

Query: 296 TVKHIRQGSRGISLLHSSGRSNAGLLCAIHGATVENTLFEDGDGANTFRAFNP 349
           TVKHIRQGSRGIS LHSSGRSNA        + V+  +   G  A     + P
Sbjct: 465 TVKHIRQGSRGISFLHSSGRSNA-------SSDVQQVVSRSGTHARKLSLYTP 510

[Close]

BLAST of Cla97C11G214090 vs. TAIR 10
Match: ATCG00280.1 (photosystem II reaction center protein C )

HSP 1 Score: 73.6 bits (179), Expect = 4.7e-13
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 32  KPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFV 68
           KPFAWARRALVWSGEAYLSYSL ALSV GFIACCFV
Sbjct: 255 KPFAWARRALVWSGEAYLSYSLAALSVCGFIACCFV 290

[Close]

BLAST of Cla97C11G214090 vs. TAIR 10
Match: ATCG00020.1 (photosystem II reaction center protein A )

HSP 1 Score: 61.2 bits (147), Expect = 2.4e-09
Identity = 34/104 (32.69%), Postives = 59/104 (56.73%), Query Frame = 0


Query: 309 LLHSSGRSNAGLLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEETYSMVTANRFWSQI 368
           +L  +G     L  A+HG+ V ++L  E  +  +    +   Q EETY++V A+ ++ ++
Sbjct: 199 MLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRL 258

Query: 369 F--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 410
                +F+N R LHFF+   PV G+W +ALG+  +A NL  ++F
Sbjct: 259 IFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302

The following BLAST results are available for this feature:

BLAST of Cla97C11G214090 vs. NCBI nr


Match Name	E-value	Identity	Description
OMP01689.1	2.3e-62	60.85	Photosynthetic reaction centre, L/M [Corchorus capsularis]	[more]
QUV76072.1	7.4e-61	92.37	photosystem II protein D2 [Allium plurifoliatum]	[more]
ANS11014.1	7.4e-61	91.60	photosystem II protein D2 [Euphronia guianensis]	[more]
AVY52546.1	9.6e-61	93.08	PsbD [Chimaphila japonica]	[more]
AWI69958.1	9.6e-61	93.08	photosystem II protein D2 [Macropharynx renteriae]	[more]

BLAST of Cla97C11G214090 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4FFP4	2.1e-63	96.00	Photosystem II D2 protein OS=Acorus americanus OX=263995 GN=psbD PE=3 SV=1	[more]
Q3V539	2.1e-63	96.00	Photosystem II D2 protein OS=Acorus calamus OX=4465 GN=psbD PE=3 SV=1	[more]
A4QJB0	2.1e-63	96.00	Photosystem II D2 protein OS=Aethionema cordifolium OX=434059 GN=psbD PE=3 SV=1	[more]
A4QJJ4	2.1e-63	96.00	Photosystem II D2 protein OS=Aethionema grandiflorum OX=72657 GN=psbD PE=3 SV=1	[more]
Q70Y08	2.1e-63	96.00	Photosystem II D2 protein OS=Amborella trichopoda OX=13333 GN=psbD PE=3 SV=1	[more]

BLAST of Cla97C11G214090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1R3K3M0	1.1e-62	60.85	Photosynthetic reaction centre, L/M OS=Corchorus capsularis OX=210143 GN=CCACVL1...	[more]
A0A1C8QF76	3.6e-61	91.60	Photosystem II D2 protein OS=Euphronia guianensis OX=82261 GN=psbD PE=3 SV=1	[more]
A0A2R4QIT5	4.7e-61	93.08	Photosystem II D2 protein OS=Chimaphila japonica OX=638623 GN=psbD PE=3 SV=1	[more]
A0A1B1CZP4	4.7e-61	93.08	Photosystem II D2 protein OS=Pyrola rotundifolia OX=13651 GN=psbD PE=3 SV=1	[more]
A0A1B0ZEU5	4.7e-61	93.08	Photosystem II D2 protein OS=Orthilia secunda OX=93819 GN=psbD PE=3 SV=1	[more]

BLAST of Cla97C11G214090 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00270.1	1.5e-64	96.00	photosystem II reaction center protein D	[more]
ATMG00520.1	4.6e-37	70.80	Intron maturase, type II family protein	[more]
ATCG00280.1	4.7e-13	94.44	photosystem II reaction center protein C	[more]
ATCG00020.1	2.4e-09	32.69	photosystem II reaction center protein A	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000932	Photosystem antenna protein-like	PFAM	PF00421	PSII	coord: 32..67 e-value: 3.7E-7 score: 29.2
IPR000484	Photosynthetic reaction centre, L/M	PFAM	PF00124	Photo_RC	coord: 319..428 e-value: 6.3E-18 score: 64.9
IPR000484	Photosynthetic reaction centre, L/M	PANTHER	PTHR33149	PHOTOSYSTEM II PROTEIN D1	coord: 316..442
IPR036854	Photosystem II protein D1/D2 superfamily	GENE3D	1.20.85.10		coord: 314..414 e-value: 1.6E-15 score: 59.1
IPR036854	Photosystem II protein D1/D2 superfamily	SUPERFAMILY	81483	Bacterial photosystem II reaction centre, L and M subunits	coord: 318..439
None	No IPR available	PANTHER	PTHR33149:SF7	PHOTOSYSTEM II D2 PROTEIN	coord: 316..442
IPR036001	Photosystem antenna protein-like superfamily	SUPERFAMILY	161077	Photosystem II antenna protein-like	coord: 32..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C11G214090.2	Cla97C11G214090.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
cellular_component	GO:0009521	photosystem
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0010242	oxygen evolving activity