Cla97C11G214080 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C11G214080
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	Protein TIC 214
Location	Cla97Chr11: 7648817 .. 7650174 (-)
RNA-Seq Expression	Cla97C11G214080
Synteny	Cla97C11G214080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGATAGAAATGCTAACCAAGTGACACCCTTATACACTAATAAAGGAGAAAGGCCATGGGTCATGAAAGAGAAGAAAGTATCAGCAACAACAGGTTTTATTACGGGACAGCTCATGATGTTCATATCGATCTATTATGCGCCTCTGCATCTAGCATTGGGTAGACCTCATACAATAACTGTCCTAGCTCTACCGTAAATAGCATAGTATTATCTGATTCATAGGGATACGAAAAAGTATTTTTAGTACCAAAATGGGGAATAGTAACAAAAGGGCGCATAATTTTTGTTACATTACTGTCAATTTGATATGTTGTTTTTTTCACCAAAAAAGAAGACCTTTCATTATTATTCATTGTTAATAATGATAAGAAACGAAAGTTTTTTTGAATGATTTTTGATCCTTCTTTACCCCATAATGATATTGAATAGAGGGAGTTATTTGTTTTTCCACTGTAGTTTTTACAATAAAGGTTTAAATGTCCATCAAAAGTAAGTAAGTAGATGCGAAACATATAAAATGCTGTTAATCCAGCTGTGGAACAGGCTATTATTGCGAAAATCGGTGAATACAACCAACTATCATTAAGAATTTCATCTTTGGACCAAAAGCAGGCAAGGGGTGGAATACCACAAAGAGAAAGGGTACCTAATAAAAAAGCATTTTTTGTAATTGGCACATGCTTTGTTAAACCACCCATAAGAACCATATTCTGACTTTTATCGGGAGAATATCCAACAACGGATTCCATTGAGTGAATAATGGACCCAGATCCTAAAAACAACAACGCTGGTCGGGATCTCTCTGGTAAAAACGAAAGCGGAATTCCTGATTATTCAGAACTTAATCCAATCGCCGTAACTTGGGCTCATCATGCTATACTCGTGGGGAAGGAAAAACGAGCAGTTTACGCTTTAGTAGCTACCGTTTCACTGGCTCTAGTATTCACAGGCTTTCAAGGAATGGAATATTATCAAGCACCCTTCACTATTTCGGATAGTATTTATGGTTCTACCTTTTTCTGTGTTCAACTCCGCGGGTTAGCTGGTTGGAAGGCATTGCTTGCTTTCTGCCGTCTATCTTTCCCTTCTTTCACTCGGTCAAGCGGCTTCGCTCCTTTCTTGTTGAGAATCTTATGTCTATAGGCTTTAAAAAACTCGTTTACTCTAACCCGGGTAAGGTTCTCCGGTGAATTCGCGACATTCCAGTACCAATGGATGTACCGAAGCCAATCCTTCATCCAGTTCCTGAGCAAAGACCACTCAAGGAAGTCCCGGACTCTTTCTGTTGGAAATCAAATAATTAATCAAGAGCCACCTTTAAATCCGAAGGTTTCATCTCTTGTTGAAGGATAG

mRNA sequence

ATGGATGATAGAAATGCTAACCAAGTGACACCCTTATACACTAATAAAGGAGAAAGGCCATGGGTCATGAAAGAGAAGAAAGTATCAGCAACAACAGCTGTGGAACAGGCTATTATTGCGAAAATCGGTGAATACAACCAACTATCATTAAGAATTTCATCTTTGGACCAAAAGCAGGCAAGGGGTGGAATACCACAAAGAGAAAGGGCTTTAAAAAACTCGTTTACTCTAACCCGGGTAAGGTTCTCCGGTGAATTCGCGACATTCCAGTACCAATGGATGTACCGAAGCCAATCCTTCATCCAGTTCCTGAGCAAAGACCACTCAAGGAAGTCCCGGACTCTTTCTGTTGGAAATCAAATAATTAATCAAGAGCCACCTTTAAATCCGAAGGTTTCATCTCTTGTTGAAGGATAG

Coding sequence (CDS)

ATGGATGATAGAAATGCTAACCAAGTGACACCCTTATACACTAATAAAGGAGAAAGGCCATGGGTCATGAAAGAGAAGAAAGTATCAGCAACAACAGCTGTGGAACAGGCTATTATTGCGAAAATCGGTGAATACAACCAACTATCATTAAGAATTTCATCTTTGGACCAAAAGCAGGCAAGGGGTGGAATACCACAAAGAGAAAGGGCTTTAAAAAACTCGTTTACTCTAACCCGGGTAAGGTTCTCCGGTGAATTCGCGACATTCCAGTACCAATGGATGTACCGAAGCCAATCCTTCATCCAGTTCCTGAGCAAAGACCACTCAAGGAAGTCCCGGACTCTTTCTGTTGGAAATCAAATAATTAATCAAGAGCCACCTTTAAATCCGAAGGTTTCATCTCTTGTTGAAGGATAG

Protein sequence

MDDRNANQVTPLYTNKGERPWVMKEKKVSATTAVEQAIIAKIGEYNQLSLRISSLDQKQARGGIPQRERALKNSFTLTRVRFSGEFATFQYQWMYRSQSFIQFLSKDHSRKSRTLSVGNQIINQEPPLNPKVSSLVEG

Homology

[Close]

BLAST of Cla97C11G214080 vs. NCBI nr
Match: QNT11941.1 (hypothetical chloroplast RF1 [Lycoris aurea])

HSP 1 Score: 68.9 bits (167), Expect = 3.8e-08
Identity = 35/44 (79.55%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 25  EKKVSATTAVEQAIIAKIGEYNQLSLRISSLDQKQARGGIPQRE 69
           E++ +   AV++AIIAKIGEYNQLSLRISSLDQKQARGGIPQRE
Sbjct: 599 EEESAEDPAVKEAIIAKIGEYNQLSLRISSLDQKQARGGIPQRE 642

[Close]

BLAST of Cla97C11G214080 vs. ExPASy TrEMBL
Match: A0A7H1JKK2 (Protein TIC 214 OS=Lycoris aurea OX=152838 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.8e-08
Identity = 35/44 (79.55%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 25  EKKVSATTAVEQAIIAKIGEYNQLSLRISSLDQKQARGGIPQRE 69
           E++ +   AV++AIIAKIGEYNQLSLRISSLDQKQARGGIPQRE
Sbjct: 599 EEESAEDPAVKEAIIAKIGEYNQLSLRISSLDQKQARGGIPQRE 642

[Close]

BLAST of Cla97C11G214080 vs. ExPASy TrEMBL
Match: A0A0E0RI64 (Uncharacterized protein OS=Oryza rufipogon OX=4529 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.0e-06
Identity = 32/42 (76.19%), Postives = 35/42 (83.33%), Query Frame = 0


Query: 28 VSATTAVEQAIIAKIGEYNQLSLRISSLDQKQARGGIPQRER 70
          +    AV++AII K GEYNQL LRISSLDQKQARGGIPQRER
Sbjct: 7  IKINPAVKEAIIPKKGEYNQLLLRISSLDQKQARGGIPQRER 48

The following BLAST results are available for this feature:

BLAST of Cla97C11G214080 vs. NCBI nr


Match Name	E-value	Identity	Description
QNT11941.1	3.8e-08	79.55	hypothetical chloroplast RF1 [Lycoris aurea]	[more]

BLAST of Cla97C11G214080 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cla97C11G214080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7H1JKK2	1.8e-08	79.55	Protein TIC 214 OS=Lycoris aurea OX=152838 GN=ycf1 PE=3 SV=1	[more]
A0A0E0RI64	1.0e-06	76.19	Uncharacterized protein OS=Oryza rufipogon OX=4529 PE=4 SV=1	[more]

BLAST of Cla97C11G214080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C11G214080.1	Cla97C11G214080.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
cellular_component	GO:0009706	chloroplast inner membrane
cellular_component	GO:0016021	integral component of membrane