Cla97C11G213860 (gene) Watermelon (97103) v2.5

Overview
NameCla97C11G213860
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionActin-related protein 2/3 complex subunit 5
LocationCla97Chr11: 7394068 .. 7398231 (-)
RNA-Seq ExpressionCla97C11G213860
SyntenyCla97C11G213860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGACTACAGGTGAATTTGTAGAAGCAGATAATGCAGAAGCCATAATCACCAGAATTGAGCACAAATCTCGAAAGATCGAGAGCTTACTTAAACAGTAATGAATTTACCTGCTCTTTGATTCATAGGATTTAAATTCATTTAGCTCCTCTTATTGAAGACGCCCTTAATTTGTCAATTTTTTTATTCGTAAAAGGTCTAGACCAGTCGAAGCTCTTAAAACTGCTCTCGAAGGTTCCCCTCCAAATACCCGAGATGAACGCTGCAAGGTATCATTTCTTTCTCCCTGCCTACGATCAATTTGGTTTCTGATCTGTCGTGTTTTGTTCAGAGCTAATGGCGGTGTAGAATCCATATTAATGTTGTTTCTATACCATGGGTTTTCCTTGCATTTTTTCTGTGCTAATTGATTTTATTTTTATTATTTAATTTGTGGGTAATTCTACAAATATTAAGGGAAGTTATTGGAGAATCCCTGTTTTTCTGTTATCATTAAATCTATCTGTTATGTTTTTCCTACATTTTCTCAATGATGAGGCCAATTAGGATTGCTGGATGTTGATTTAATTTTTGGAAAGAGTTTGCTGTATTTGTTTGCAGCTACTCGATATGAATAGGCTTGCTGTTTCTTTCATGTTTATGTTTTGTCGGTCTGCTTGACGTGGGAGAATGAGTTAATCTGATGTGATTATTTGGACTTCTCCAGTCAGCAAATTGGATTGTGGTGCATAGGGCTCTTATGGCTATAAAGGATGTAGATGGGATGTTTTCTTCGTTGGATCCAGAGTACTATGATATTCTAATGAAGTGAGTTTGTCCGGAATTTAACTGCTAAAATATTAATTCTTATTGTTTCTACTTATCTCAGCAGGAGCCTAAAGTTGGTCATTCTAATTGTTTTTCTTTAATTAATTCCAAGTTTACTTTCTGATATTATTCTTTTGCTATGAAATTTATATTCAAGTTGTTGGTTTCATCCTACCATGAGTTATGCAAACATAAATACATTCTATTTTCTTTTTTCCCGGTCTCATCAAATTTCTACAGCTAACTGTACTCAGTCAGTAGGGCATGTGGTAGTCTTTAGATGCTTGGAAGATTGCTTCGGTGATATGAATTTATTTTCCAGCGAGGAGTCTTTGTCAGAGTGGAATCTCTCTAACCATCTTGCTAGAAAGATCTCATCACATCTTCTGAATTTAGCAAGTCATGTCCAACCTCTCTTTATAGACCTGCCTCAAAATTTGTTATTTTTGTCCTATATTATTATGTGTCTATTTAGTACGCTTAACAAGCGTTCAATTCAATAAAGGTTGGACATATATTGACTTTGAAGTTTTAATAACTAGTCTCTAACACATATCTATTGGCTAACAAATATTTAATACGTGTCCAACAAGTGTGGAGTATCCAAATGTTAAACATGGACACACTAGCCAAACTAAAGTGTTTCTGCTTCTTAGGGCCCTACCTTCCAGCAGTCTCTCAATTTGTTTTCCAAAACATTCCCTAATATTCAAGGATTATGAACACCAACAAGAAATAAGTGAGGATGCTTGACAACACTGATTTGGCCAATGTTAATCCTCCCCTTTGGAACATCAGGACTGTTTTCAAGTGGATCATTTATCTGAGATTAATGACAGGGTTTCAAAAGCCCATGTCCTTGATTGTCCTCCACTCATCACATAGAAGGCTTTTTCTTCTGAGTGTATGCTTGATCCTCTTGAATCTCTAGTACCACCAAGAATATTTGTTCATGAGATTTTATAGCACTTGCTTTTTTTCCTTTTTTAAAAGGATTCACCAACAGAGAAATGATGACTAGAATAGCTGGAAACCAGCCAAAAGAATTAAACAAAAAGCTTGCATTTTTAAGCATGGTTGCAATGAGGAAAAATATGATCTTTGTTTTCTTCTTACTATATGCATATGGGGCATACCAACTGGGCGAAATGGAGGATTAGGTTTCTAGCTTGGACTTTTATCTTGGGTACTATACTAATAACACCGTGGAGAAGCTCCCATATGGACCAGGAGTGTAGGGAAACTTTGTGAGAGTCATTGAGGCATTTTAGGAAATTTCTGGACCTTTTTTTGCAGCTTGCACTAAGACCAGAAATCATCTCGAGTTTCCAAAGAGAAAACATATAGAAGATTTGAAAAATTACGCCAAATGGTGTGTTTTTCAGTAGAGTTTCTCCAAAGCCACTTGGCCATGAACGTGATATTTCTTTGCTTGAGATGACCAAGACTAAACTCTCAAAGATGAAGAGGAAGCTTACTCTTTTCCAAATCACAATGTATGATCCACCTTCAGTAGTGGATCCCTTCAGTTCCAGAAGTCCTGGAAAGACATTAGCGTGTTTAAAATTTCTAAACATGAACATCACTTGTTGATTCTTTTGGTTCGTTTCTTTCTCCTATATCGACAAGGGGATTCTGTTTCTTTCTCATTTGGTTTCTGTTGGCAGTTGTCCAATAGGAAAACGACGGAGGTGGCCTCTATTCTTTTTTTAATGAGGATTTTGACTTTAGGCTTGCGAGAAGGGATGTTTATGTTTGGATTACTAACCCGTTGGAGGGCATCTCTTGTAAGTCGTTCTTTAGGATTTTATTGGATCCTTGTCCTGTTGTTGACGTGTTATGGAAGATTAAGATTCCAAAGAAAGTTAAGTTCTTTTCATGGCAAGTTTTGCTTAGTTGTATGAATATGATGGATAGGATTTTGAGAAAGATGGCTTCATTAATAGGTCCTTTTTGTTGTATCCTTTGTTGGAAGGCAGAGGAAAACCTAGATCACCTTCTTTGGGAGTGTCAGTTTGTGGATCAGTTTGGCATGGTTTCTTGCAGGAGTTTGATTTTTCACTTACTCTCCATAGAGATGTTTAGTTGATGATGGGGGAGTTCCTCCTCCATCCACCTTTCAAAGAGATAGGTCATTTTCTTTGGTTCGTGGGGGTGTGCTTTATTGTGGGATCTTTGGGGGAAGAGGAACAATAGAGTGTTTCGGGGTGAGAAGAGGGACCCTAGCGAGGTTTGGTTTTTGGTGAGGAACAATAGAACTTTGGGCTTCGAAAGGGTGTGCTTTATTGTGGGATCTTTGGGGGAAGAGGAACAATAGAGTGTTTCGGGGTGAGAAGGACCCTAGCGAGGTTTGGTTCTTGGTGAGGAACAATAGAACTTTGGGCTTCGATTTCGAAGGCTTTTTGTAATACTTTCTAGGCAAATTTGTCTCCTACAAAAAAGATTATAGTAGACGAATTTAAATTAGGCTCTTTCTTCATTAGATTGTGGCTTTGTGACTTCATGGAAAAAATTATTCTTCCACCTTCAGTTTTCGACAGGCTTAATTATTCAGCCTTTTCAATGTATCCTTATGCCTTCCCAGGAACCTCGAAGATTGGTTATATGAAGTGTTCTTCAATCGGTGGTTGAACGGGGAAACTAGACATCTTCGGACATGCACATTTTGACTGCCTTACACAAATAGTTATTTGATAACCATAGTGGTTCTTTTATCAAGCAAGATTGGAACTCCGAAAGGTGCTCATGTAATTGTTGTCTTTGGTAGGGTTTTCATTGCCCTCCTCCTCTAGGTTGTATTCCTTTCGTGTTTTGAATATATTGTTTCTAATATGTACATATATAAATCACGAAAAAATTTCAAGGATAGGGTTCCTGAAATTTTGAGATCTCAGGTTACAATTTTGGTAGCCCCAGACAAGGAATTGACCTACATGCTACATCCAAAACAGTTAAACCATATCTTGAATTATGGAAATAGGTTTCATCATGGTTGATTAGTTTTAGAGGACGCGTGCACAAGCCAATGGTTTCTTCTAAGAGTTAGATAATATTGAATAAAGCCCATATTCTCAGTATTCATCGCTGAAAAAGGATTCATATTGAAGAGAGATATCATCCTTTCCAACTTGAAAGCCATCCGTATAAAACCTGTGAGTAAGGAGGATGAAGCCATTAGACACTAAAATTAATAGGAAGGGTAGAAAAGATTTCCATGAACTCATCTCAAGGGTAATCTTTCTAGGCTTGCTGCTAGTATAATTCGCGTCCTTCAACGAGTGCGAAAACAACTTCAAGATAGTGTCAAGAAAGTTCCGCTAATCAAGACTTCACGGGATTTTGAATCCACTGCTTGA

mRNA sequence

ATGGCGACTACAGGTGAATTTGTAGAAGCAGATAATGCAGAAGCCATAATCACCAGAATTGAGCACAAATCTCGAAAGATCGAGAGCTTACTTAAACAGTCTAGACCAGTCGAAGCTCTTAAAACTGCTCTCGAAGGTTCCCCTCCAAATACCCGAGATGAACGCTGCAAGTCAGCAAATTGGATTGTGGTGCATAGGGCTCTTATGGCTATAAAGGATGTAGATGGGATGTTTTCTTCGTTGGATCCAGAGTACTATGATATTCTAATGAATAGAGTTTCTCCAAAGCCACTTGGCCATGAACGTGATATTTCTTTGCTTGAGATGACCAAGACTAAACTCTCAAAGATGAAGAGGAAGCTTACTCTTTTCCAAATCACAATGTATGATCCACCTTCATTGTCCAATAGGAAAACGACGGAGGTGGCCTCTATTCTTTTTTTAATGAGGATTTTGACTTTAGGCTTGCGAGAAGGGATGTTTATGTTTGGATTACTAACCCGTTGGAGGGCATCTCTTAGATGTTTAGTTGATGATGGGGGAGTTCCTCCTCCATCCACCTTTCAAAGAGATAGGTCATTTTCTTTGGTTCGTGGGGGTGTGCTTTATTGTGGGATCTTTGGGGGAAGAGGAACAATAGAGTGTTTCGGGGGTAATCTTTCTAGGCTTGCTGCTAGTATAATTCGCGTCCTTCAACGAGTGCGAAAACAACTTCAAGATAGTGTCAAGAAAGTTCCGCTAATCAAGACTTCACGGGATTTTGAATCCACTGCTTGA

Coding sequence (CDS)

ATGGCGACTACAGGTGAATTTGTAGAAGCAGATAATGCAGAAGCCATAATCACCAGAATTGAGCACAAATCTCGAAAGATCGAGAGCTTACTTAAACAGTCTAGACCAGTCGAAGCTCTTAAAACTGCTCTCGAAGGTTCCCCTCCAAATACCCGAGATGAACGCTGCAAGTCAGCAAATTGGATTGTGGTGCATAGGGCTCTTATGGCTATAAAGGATGTAGATGGGATGTTTTCTTCGTTGGATCCAGAGTACTATGATATTCTAATGAATAGAGTTTCTCCAAAGCCACTTGGCCATGAACGTGATATTTCTTTGCTTGAGATGACCAAGACTAAACTCTCAAAGATGAAGAGGAAGCTTACTCTTTTCCAAATCACAATGTATGATCCACCTTCATTGTCCAATAGGAAAACGACGGAGGTGGCCTCTATTCTTTTTTTAATGAGGATTTTGACTTTAGGCTTGCGAGAAGGGATGTTTATGTTTGGATTACTAACCCGTTGGAGGGCATCTCTTAGATGTTTAGTTGATGATGGGGGAGTTCCTCCTCCATCCACCTTTCAAAGAGATAGGTCATTTTCTTTGGTTCGTGGGGGTGTGCTTTATTGTGGGATCTTTGGGGGAAGAGGAACAATAGAGTGTTTCGGGGGTAATCTTTCTAGGCTTGCTGCTAGTATAATTCGCGTCCTTCAACGAGTGCGAAAACAACTTCAAGATAGTGTCAAGAAAGTTCCGCTAATCAAGACTTCACGGGATTTTGAATCCACTGCTTGA

Protein sequence

MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILMNRVSPKPLGHERDISLLEMTKTKLSKMKRKLTLFQITMYDPPSLSNRKTTEVASILFLMRILTLGLREGMFMFGLLTRWRASLRCLVDDGGVPPPSTFQRDRSFSLVRGGVLYCGIFGGRGTIECFGGNLSRLAASIIRVLQRVRKQLQDSVKKVPLIKTSRDFESTA
Homology
[Close]
BLAST of Cla97C11G213860 vs. NCBI nr
Match: XP_038884940.1 (actin-related protein 2/3 complex subunit 5A [Benincasa hispida] >XP_038884941.1 actin-related protein 2/3 complex subunit 5A [Benincasa hispida] >XP_038884942.1 actin-related protein 2/3 complex subunit 5A [Benincasa hispida] >XP_038884943.1 actin-related protein 2/3 complex subunit 5A [Benincasa hispida])

HSP 1 Score: 180.6 bits (457), Expect = 1.7e-41
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0 

Query: 1  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60
          MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61 WIVVHRALMAIKDVDGMFSSLDPEYYDILM 91
          WIVVHRALMAIKDVDGMFSSLDPEYYDILM
Sbjct: 61 WIVVHRALMAIKDVDGMFSSLDPEYYDILM 90

[Close]
BLAST of Cla97C11G213860 vs. NCBI nr
Match: XP_008441367.1 (PREDICTED: actin-related protein 2/3 complex subunit 5A [Cucumis melo])

HSP 1 Score: 176.0 bits (445), Expect = 4.1e-40
Identity = 88/90 (97.78%), Postives = 89/90 (98.89%), Query Frame = 0 

Query: 1  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60
          MATT EFVEADNAEAIITRIEHKSRKIESLLKQS+PVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1  MATTCEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61 WIVVHRALMAIKDVDGMFSSLDPEYYDILM 91
          WIVVHRALMAIKDVDGMFSSLDPEYYDILM
Sbjct: 61 WIVVHRALMAIKDVDGMFSSLDPEYYDILM 90

[Close]
BLAST of Cla97C11G213860 vs. NCBI nr
Match: KAA0056599.1 (actin-related protein 2/3 complex subunit 5A [Cucumis melo var. makuwa] >TYK24282.1 actin-related protein 2/3 complex subunit 5A [Cucumis melo var. makuwa])

HSP 1 Score: 176.0 bits (445), Expect = 4.1e-40
Identity = 88/90 (97.78%), Postives = 89/90 (98.89%), Query Frame = 0 

Query: 1  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60
          MATT EFVEADNAEAIITRIEHKSRKIESLLKQS+PVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1  MATTCEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61 WIVVHRALMAIKDVDGMFSSLDPEYYDILM 91
          WIVVHRALMAIKDVDGMFSSLDPEYYDILM
Sbjct: 61 WIVVHRALMAIKDVDGMFSSLDPEYYDILM 90

[Close]
BLAST of Cla97C11G213860 vs. NCBI nr
Match: XP_015889484.1 (actin-related protein 2/3 complex subunit 5A [Ziziphus jujuba])

HSP 1 Score: 173.7 bits (439), Expect = 2.0e-39
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 0 

Query: 1  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60
          MA TGEFVEADNAEAIITRIEHKSRKIESLLKQ +PVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1  MAGTGEFVEADNAEAIITRIEHKSRKIESLLKQYKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61 WIVVHRALMAIKDVDGMFSSLDPEYYDILM 91
          WIVVHRA+MAIKDVDGMFSSLDPEYYDILM
Sbjct: 61 WIVVHRAIMAIKDVDGMFSSLDPEYYDILM 90

[Close]
BLAST of Cla97C11G213860 vs. NCBI nr
Match: XP_022133485.1 (actin-related protein 2/3 complex subunit 5A [Momordica charantia])

HSP 1 Score: 172.9 bits (437), Expect = 3.5e-39
Identity = 86/90 (95.56%), Postives = 86/90 (95.56%), Query Frame = 0 

Query: 1  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60
          MA   EFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1  MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61 WIVVHRALMAIKDVDGMFSSLDPEYYDILM 91
          WI VHRALMAIKDVDGMFSSLDPEYYDILM
Sbjct: 61 WIAVHRALMAIKDVDGMFSSLDPEYYDILM 90

[Close]
BLAST of Cla97C11G213860 vs. ExPASy Swiss-Prot
Match: Q9M117 (Actin-related protein 2/3 complex subunit 5A OS=Arabidopsis thaliana OX=3702 GN=ARPC5A PE=1 SV=2)

HSP 1 Score: 147.5 bits (371), Expect = 2.1e-34
Identity = 74/85 (87.06%), Postives = 78/85 (91.76%), Query Frame = 0 

Query: 6  EFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVH 65
          EFVEADNAEAII RIE KSRKIESLLKQ + VEALKTALEGSPP TRDERCKSANWIVVH
Sbjct: 3  EFVEADNAEAIIARIETKSRKIESLLKQYKHVEALKTALEGSPPKTRDERCKSANWIVVH 62

Query: 66 RALMAIKDVDGMFSSLDPEYYDILM 91
          RALMAIKD+DGM ++LD EYYDILM
Sbjct: 63 RALMAIKDIDGMLNALDVEYYDILM 87

[Close]
BLAST of Cla97C11G213860 vs. ExPASy Swiss-Prot
Match: B3H6Y2 (Actin-related protein 2/3 complex subunit 5B OS=Arabidopsis thaliana OX=3702 GN=ARPC5B PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.4e-30
Identity = 67/90 (74.44%), Postives = 75/90 (83.33%), Query Frame = 0 

Query: 1  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60
          MA    FVEADNAE I+ RIE KS+KIESLLK  + VEALKTAL+GSPP T DERCKSAN
Sbjct: 1  MAGAAAFVEADNAEEIMARIETKSQKIESLLKHYKHVEALKTALDGSPPKTLDERCKSAN 60

Query: 61 WIVVHRALMAIKDVDGMFSSLDPEYYDILM 91
          WIVVHRA+MAIKD++GM +SL  EYYDILM
Sbjct: 61 WIVVHRAIMAIKDIEGMLNSLTAEYYDILM 90

[Close]
BLAST of Cla97C11G213860 vs. ExPASy TrEMBL
Match: A0A5A7USU9 (Actin-related protein 2/3 complex subunit 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00470 PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 2.0e-40
Identity = 88/90 (97.78%), Postives = 89/90 (98.89%), Query Frame = 0 

Query: 1  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60
          MATT EFVEADNAEAIITRIEHKSRKIESLLKQS+PVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1  MATTCEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61 WIVVHRALMAIKDVDGMFSSLDPEYYDILM 91
          WIVVHRALMAIKDVDGMFSSLDPEYYDILM
Sbjct: 61 WIVVHRALMAIKDVDGMFSSLDPEYYDILM 90

[Close]
BLAST of Cla97C11G213860 vs. ExPASy TrEMBL
Match: A0A1S3B407 (Actin-related protein 2/3 complex subunit 5 OS=Cucumis melo OX=3656 GN=LOC103485501 PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 2.0e-40
Identity = 88/90 (97.78%), Postives = 89/90 (98.89%), Query Frame = 0 

Query: 1  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60
          MATT EFVEADNAEAIITRIEHKSRKIESLLKQS+PVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1  MATTCEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61 WIVVHRALMAIKDVDGMFSSLDPEYYDILM 91
          WIVVHRALMAIKDVDGMFSSLDPEYYDILM
Sbjct: 61 WIVVHRALMAIKDVDGMFSSLDPEYYDILM 90

[Close]
BLAST of Cla97C11G213860 vs. ExPASy TrEMBL
Match: A0A6P4A354 (Actin-related protein 2/3 complex subunit 5 OS=Ziziphus jujuba OX=326968 GN=LOC107424250 PE=3 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 9.9e-40
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 0 

Query: 1  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60
          MA TGEFVEADNAEAIITRIEHKSRKIESLLKQ +PVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1  MAGTGEFVEADNAEAIITRIEHKSRKIESLLKQYKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61 WIVVHRALMAIKDVDGMFSSLDPEYYDILM 91
          WIVVHRA+MAIKDVDGMFSSLDPEYYDILM
Sbjct: 61 WIVVHRAIMAIKDVDGMFSSLDPEYYDILM 90

[Close]
BLAST of Cla97C11G213860 vs. ExPASy TrEMBL
Match: A0A6J1BVD6 (Actin-related protein 2/3 complex subunit 5 OS=Momordica charantia OX=3673 GN=LOC111006055 PE=3 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 1.7e-39
Identity = 86/90 (95.56%), Postives = 86/90 (95.56%), Query Frame = 0 

Query: 1  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60
          MA   EFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1  MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61 WIVVHRALMAIKDVDGMFSSLDPEYYDILM 91
          WI VHRALMAIKDVDGMFSSLDPEYYDILM
Sbjct: 61 WIAVHRALMAIKDVDGMFSSLDPEYYDILM 90

[Close]
BLAST of Cla97C11G213860 vs. ExPASy TrEMBL
Match: A0A0A0KD59 (Actin-related protein 2/3 complex subunit 5 OS=Cucumis sativus OX=3659 GN=Csa_6G008040 PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 2.2e-39
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 0 

Query: 1  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60
          MATT +FVEADNAEAIITRIEHKSRKIESLLKQ +PVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1  MATTCDFVEADNAEAIITRIEHKSRKIESLLKQLKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61 WIVVHRALMAIKDVDGMFSSLDPEYYDILM 91
          WIVVHRALMAIKDVDGMFSSLDPEYYDILM
Sbjct: 61 WIVVHRALMAIKDVDGMFSSLDPEYYDILM 90

[Close]
BLAST of Cla97C11G213860 vs. TAIR 10
Match: AT4G01710.1 (ARP2/3 complex 16 kDa subunit (p16-Arc) )

HSP 1 Score: 147.5 bits (371), Expect = 1.5e-35
Identity = 74/85 (87.06%), Postives = 78/85 (91.76%), Query Frame = 0 

Query: 6  EFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVH 65
          EFVEADNAEAII RIE KSRKIESLLKQ + VEALKTALEGSPP TRDERCKSANWIVVH
Sbjct: 3  EFVEADNAEAIIARIETKSRKIESLLKQYKHVEALKTALEGSPPKTRDERCKSANWIVVH 62

Query: 66 RALMAIKDVDGMFSSLDPEYYDILM 91
          RALMAIKD+DGM ++LD EYYDILM
Sbjct: 63 RALMAIKDIDGMLNALDVEYYDILM 87

[Close]
BLAST of Cla97C11G213860 vs. TAIR 10
Match: AT5G65274.1 (ARP2/3 complex 16 kDa subunit (p16-Arc) )

HSP 1 Score: 134.0 bits (336), Expect = 1.7e-31
Identity = 67/90 (74.44%), Postives = 75/90 (83.33%), Query Frame = 0 

Query: 1  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60
          MA    FVEADNAE I+ RIE KS+KIESLLK  + VEALKTAL+GSPP T DERCKSAN
Sbjct: 1  MAGAAAFVEADNAEEIMARIETKSQKIESLLKHYKHVEALKTALDGSPPKTLDERCKSAN 60

Query: 61 WIVVHRALMAIKDVDGMFSSLDPEYYDILM 91
          WIVVHRA+MAIKD++GM +SL  EYYDILM
Sbjct: 61 WIVVHRAIMAIKDIEGMLNSLTAEYYDILM 90

The following BLAST results are available for this feature:
BLAST of Cla97C11G213860 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038884940.11.7e-41100.00actin-related protein 2/3 complex subunit 5A [Benincasa hispida] >XP_038884941.1... [more]
XP_008441367.14.1e-4097.78PREDICTED: actin-related protein 2/3 complex subunit 5A [Cucumis melo][more]
KAA0056599.14.1e-4097.78actin-related protein 2/3 complex subunit 5A [Cucumis melo var. makuwa] >TYK2428... [more]
XP_015889484.12.0e-3995.56actin-related protein 2/3 complex subunit 5A [Ziziphus jujuba][more]
XP_022133485.13.5e-3995.56actin-related protein 2/3 complex subunit 5A [Momordica charantia][more]
BLAST of Cla97C11G213860 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9M1172.1e-3487.06Actin-related protein 2/3 complex subunit 5A OS=Arabidopsis thaliana OX=3702 GN=... [more]
B3H6Y22.4e-3074.44Actin-related protein 2/3 complex subunit 5B OS=Arabidopsis thaliana OX=3702 GN=... [more]
BLAST of Cla97C11G213860 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7USU92.0e-4097.78Actin-related protein 2/3 complex subunit 5 OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3B4072.0e-4097.78Actin-related protein 2/3 complex subunit 5 OS=Cucumis melo OX=3656 GN=LOC103485... [more]
A0A6P4A3549.9e-4095.56Actin-related protein 2/3 complex subunit 5 OS=Ziziphus jujuba OX=326968 GN=LOC1... [more]
A0A6J1BVD61.7e-3995.56Actin-related protein 2/3 complex subunit 5 OS=Momordica charantia OX=3673 GN=LO... [more]
A0A0A0KD592.2e-3995.56Actin-related protein 2/3 complex subunit 5 OS=Cucumis sativus OX=3659 GN=Csa_6G... [more]
BLAST of Cla97C11G213860 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G01710.11.5e-3587.06ARP2/3 complex 16 kDa subunit (p16-Arc) [more]
AT5G65274.11.7e-3174.44ARP2/3 complex 16 kDa subunit (p16-Arc) [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006789Actin-related protein 2/3 complex subunit 5PFAMPF04699P16-Arccoord: 12..91
e-value: 1.0E-6
score: 29.3
IPR006789Actin-related protein 2/3 complex subunit 5PANTHERPTHR12644ARP2/3 COMPLEX 16 KD SUBUNIT P16-ARCcoord: 5..91
IPR036743Actin-related protein 2/3 complex subunit 5 superfamilyGENE3D1.25.40.190coord: 17..95
e-value: 1.6E-11
score: 46.3
IPR036743Actin-related protein 2/3 complex subunit 5 superfamilySUPERFAMILY69103Arp2/3 complex 16 kDa subunit ARPC5coord: 6..92
NoneNo IPR availablePANTHERPTHR12644:SF0ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 5coord: 5..91

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C11G213860.1Cla97C11G213860.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034314 Arp2/3 complex-mediated actin nucleation
biological_process GO:0030833 regulation of actin filament polymerization
cellular_component GO:0005885 Arp2/3 protein complex
cellular_component GO:0005737 cytoplasm
cellular_component GO:0015629 actin cytoskeleton
molecular_function GO:0051015 actin filament binding