Cla97C10G196210 (gene) Watermelon (97103) v2.5

Overview
NameCla97C10G196210
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionUnknown protein
LocationCla97Chr10: 25924631 .. 25925140 (-)
RNA-Seq ExpressionCla97C10G196210
SyntenyCla97C10G196210
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGCTCCCTTCAATCAATTTCACACTTCCCCCTTCTTTCAACCAATAATTCAATCGAACTCTGCAGCATTGTTAAATTGGATGCAGCAGCTGGGCAGTTCCGAAAGGCTAGCTTCGAGAAAAATGGGCCTCCACGATTGGGAATTCATAGATTGCCATGAACATGACGAGAAAACGCATCGCAGTGGCGATCAGAACAGAGTTTTCTCTCTAAACCATACTGATCAATCTATTGTTTCTGTTTCAAAAGTTTCCGGCCTGAATTTGATCGGCGACGTGAAAAAAGAGCCAGGAACCGCCGCGGAATTTGAAGTGGAGGAGGAGGAAAACGTGAATTCGAGAAGAATGGATCTGGCGAGTCTGGCGATGGAGAAGAGAAAACAATGGGGAAGAATGGCAATTTGTTCGTTTGGAATTGCTGTGGCGGCTACCATTTGCTCTGTGTTATTAGGAAGCCATAGCCACCACCGAGGCGGAGCTGCGCTTGTGAATAAGCGCCATTGTTGA

mRNA sequence

ATGTCTGCTCCCTTCAATCAATTTCACACTTCCCCCTTCTTTCAACCAATAATTCAATCGAACTCTGCAGCATTGTTAAATTGGATGCAGCAGCTGGGCAGTTCCGAAAGGCTAGCTTCGAGAAAAATGGGCCTCCACGATTGGGAATTCATAGATTGCCATGAACATGACGAGAAAACGCATCGCAGTGGCGATCAGAACAGAGTTTTCTCTCTAAACCATACTGATCAATCTATTGTTTCTGTTTCAAAAGTTTCCGGCCTGAATTTGATCGGCGACGTGAAAAAAGAGCCAGGAACCGCCGCGGAATTTGAAGTGGAGGAGGAGGAAAACGTGAATTCGAGAAGAATGGATCTGGCGAGTCTGGCGATGGAGAAGAGAAAACAATGGGGAAGAATGGCAATTTGTTCGTTTGGAATTGCTGTGGCGGCTACCATTTGCTCTGTGTTATTAGGAAGCCATAGCCACCACCGAGGCGGAGCTGCGCTTGTGAATAAGCGCCATTGTTGA

Coding sequence (CDS)

ATGTCTGCTCCCTTCAATCAATTTCACACTTCCCCCTTCTTTCAACCAATAATTCAATCGAACTCTGCAGCATTGTTAAATTGGATGCAGCAGCTGGGCAGTTCCGAAAGGCTAGCTTCGAGAAAAATGGGCCTCCACGATTGGGAATTCATAGATTGCCATGAACATGACGAGAAAACGCATCGCAGTGGCGATCAGAACAGAGTTTTCTCTCTAAACCATACTGATCAATCTATTGTTTCTGTTTCAAAAGTTTCCGGCCTGAATTTGATCGGCGACGTGAAAAAAGAGCCAGGAACCGCCGCGGAATTTGAAGTGGAGGAGGAGGAAAACGTGAATTCGAGAAGAATGGATCTGGCGAGTCTGGCGATGGAGAAGAGAAAACAATGGGGAAGAATGGCAATTTGTTCGTTTGGAATTGCTGTGGCGGCTACCATTTGCTCTGTGTTATTAGGAAGCCATAGCCACCACCGAGGCGGAGCTGCGCTTGTGAATAAGCGCCATTGTTGA

Protein sequence

MSAPFNQFHTSPFFQPIIQSNSAALLNWMQQLGSSERLASRKMGLHDWEFIDCHEHDEKTHRSGDQNRVFSLNHTDQSIVSVSKVSGLNLIGDVKKEPGTAAEFEVEEEENVNSRRMDLASLAMEKRKQWGRMAICSFGIAVAATICSVLLGSHSHHRGGAALVNKRHC
Homology
BLAST of Cla97C10G196210 vs. NCBI nr
Match: KGN59752.1 (hypothetical protein Csa_001232 [Cucumis sativus])

HSP 1 Score: 134.4 bits (337), Expect = 9.0e-28
Identity = 76/129 (58.91%), Postives = 87/129 (67.44%), Query Frame = 0

Query: 43  MGLHDWEFIDCHE-HDEKTHRSGDQNRVFSLNHTDQSIVSVSKVSGLNLIGDVKKEPGTA 102
           MGL DWE +DCHE HD++  R              +++V    +SG  LIGD K E    
Sbjct: 1   MGLDDWELLDCHEDHDQEKSR------------PHENVV----ISGQKLIGDTKNEMEAV 60

Query: 103 AEFEVEEEENVNSR-RMDLASLAMEKRKQWGRMAICSFGIAVAATICSVLLGSHSHHRGG 162
           AEF+VEEEE V+SR  MD   +AMEKRKQWGR  +CSFGIAVAATICSVLLGSHSHH GG
Sbjct: 61  AEFDVEEEEKVDSRGGMD---MAMEKRKQWGRTVVCSFGIAVAATICSVLLGSHSHHHGG 110

Query: 163 AALVNKRHC 170
            A VNKRHC
Sbjct: 121 GAFVNKRHC 110

BLAST of Cla97C10G196210 vs. NCBI nr
Match: KAA0057194.1 (hypothetical protein E6C27_scaffold280G00230 [Cucumis melo var. makuwa] >TYK18767.1 hypothetical protein E5676_scaffold257G00740 [Cucumis melo var. makuwa])

HSP 1 Score: 129.4 bits (324), Expect = 2.9e-26
Identity = 74/128 (57.81%), Postives = 84/128 (65.62%), Query Frame = 0

Query: 43  MGLHDWEFIDCHEHDEKTHRSGDQNRVFSLNHTDQSIVSVSKVSGLNLIGDVKKEPGTAA 102
           MGL DWE +DCHE  ++  +S  +N V               +SG  LI D KKE    A
Sbjct: 1   MGLDDWELLDCHE--DREEKSRHENEV---------------ISGQKLIADTKKELEIVA 60

Query: 103 EFEVEEEENVNSRR-MDLASLAMEKRKQWGRMAICSFGIAVAATICSVLLGSHSHHRGGA 162
           EFEVEEEE  NSRR MD+A+   EK+KQ GR  +CSFGIAVAATICSVLLGSHSHH GG 
Sbjct: 61  EFEVEEEEKENSRRGMDMAT---EKKKQRGRAVVCSFGIAVAATICSVLLGSHSHHHGGG 108

Query: 163 ALVNKRHC 170
           A VNKRHC
Sbjct: 121 AFVNKRHC 108

BLAST of Cla97C10G196210 vs. ExPASy TrEMBL
Match: A0A0A0LG95 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G842740 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 4.4e-28
Identity = 76/129 (58.91%), Postives = 87/129 (67.44%), Query Frame = 0

Query: 43  MGLHDWEFIDCHE-HDEKTHRSGDQNRVFSLNHTDQSIVSVSKVSGLNLIGDVKKEPGTA 102
           MGL DWE +DCHE HD++  R              +++V    +SG  LIGD K E    
Sbjct: 1   MGLDDWELLDCHEDHDQEKSR------------PHENVV----ISGQKLIGDTKNEMEAV 60

Query: 103 AEFEVEEEENVNSR-RMDLASLAMEKRKQWGRMAICSFGIAVAATICSVLLGSHSHHRGG 162
           AEF+VEEEE V+SR  MD   +AMEKRKQWGR  +CSFGIAVAATICSVLLGSHSHH GG
Sbjct: 61  AEFDVEEEEKVDSRGGMD---MAMEKRKQWGRTVVCSFGIAVAATICSVLLGSHSHHHGG 110

Query: 163 AALVNKRHC 170
            A VNKRHC
Sbjct: 121 GAFVNKRHC 110

BLAST of Cla97C10G196210 vs. ExPASy TrEMBL
Match: A0A5D3D5E0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G00740 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.4e-26
Identity = 74/128 (57.81%), Postives = 84/128 (65.62%), Query Frame = 0

Query: 43  MGLHDWEFIDCHEHDEKTHRSGDQNRVFSLNHTDQSIVSVSKVSGLNLIGDVKKEPGTAA 102
           MGL DWE +DCHE  ++  +S  +N V               +SG  LI D KKE    A
Sbjct: 1   MGLDDWELLDCHE--DREEKSRHENEV---------------ISGQKLIADTKKELEIVA 60

Query: 103 EFEVEEEENVNSRR-MDLASLAMEKRKQWGRMAICSFGIAVAATICSVLLGSHSHHRGGA 162
           EFEVEEEE  NSRR MD+A+   EK+KQ GR  +CSFGIAVAATICSVLLGSHSHH GG 
Sbjct: 61  EFEVEEEEKENSRRGMDMAT---EKKKQRGRAVVCSFGIAVAATICSVLLGSHSHHHGGG 108

Query: 163 ALVNKRHC 170
           A VNKRHC
Sbjct: 121 AFVNKRHC 108

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN59752.19.0e-2858.91hypothetical protein Csa_001232 [Cucumis sativus][more]
KAA0057194.12.9e-2657.81hypothetical protein E6C27_scaffold280G00230 [Cucumis melo var. makuwa] >TYK1876... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LG954.4e-2858.91Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G842740 PE=4 SV=1[more]
A0A5D3D5E01.4e-2657.81Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C10G196210.2Cla97C10G196210.2mRNA