Cla97C10G191730 (gene) Watermelon (97103) v2.5

Overview
NameCla97C10G191730
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionUnknown protein
LocationCla97Chr10: 14696482 .. 14696778 (-)
RNA-Seq ExpressionCla97C10G191730
SyntenyCla97C10G191730
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGATTGGAAAGAAAGTTGGTTTGATGCTCGCAATGGTACTTATTATATCCACCTCAGCCAAATCAGTGCCCGCCATTGAAGATGAAGTGATTCAACTCCCTTCAGAATGGAAAGAAAATAATGAAGTTGCAGAAAACTTCTTCCATGGTTACTCCAGAAAAATGTATAATGGTATCGGATCCACGTTGATGGGGAGGTGCCCGTCAGGCTCTTGCTTCTCGGATGCTGATTGCGGATCCTGCATATGCAAAACAGTTTCAACTACGCCCTATATCTATGCTAAGTGTGTTTGA

mRNA sequence

ATGGGGATTGGAAAGAAAGTTGGTTTGATGCTCGCAATGGTACTTATTATATCCACCTCAGCCAAATCAGTGCCCGCCATTGAAGATGAAGTGATTCAACTCCCTTCAGAATGGAAAGAAAATAATGAAGTTGCAGAAAACTTCTTCCATGGTTACTCCAGAAAAATGTATAATGGTATCGGATCCACGTTGATGGGGAGGTGCCCGTCAGGCTCTTGCTTCTCGGATGCTGATTGCGGATCCTGCATATGCAAAACAGTTTCAACTACGCCCTATATCTATGCTAAGTGTGTTTGA

Coding sequence (CDS)

ATGGGGATTGGAAAGAAAGTTGGTTTGATGCTCGCAATGGTACTTATTATATCCACCTCAGCCAAATCAGTGCCCGCCATTGAAGATGAAGTGATTCAACTCCCTTCAGAATGGAAAGAAAATAATGAAGTTGCAGAAAACTTCTTCCATGGTTACTCCAGAAAAATGTATAATGGTATCGGATCCACGTTGATGGGGAGGTGCCCGTCAGGCTCTTGCTTCTCGGATGCTGATTGCGGATCCTGCATATGCAAAACAGTTTCAACTACGCCCTATATCTATGCTAAGTGTGTTTGA

Protein sequence

MGIGKKVGLMLAMVLIISTSAKSVPAIEDEVIQLPSEWKENNEVAENFFHGYSRKMYNGIGSTLMGRCPSGSCFSDADCGSCICKTVSTTPYIYAKCV
Homology
BLAST of Cla97C10G191730 vs. NCBI nr
Match: KAG6577331.1 (hypothetical protein SDJN03_24905, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.4 bits (220), Expect = 1.9e-14
Identity = 52/95 (54.74%), Postives = 67/95 (70.53%), Query Frame = 0

Query: 5  KKVGLMLAMVLIISTSAKSVPAIEDEVIQLPSEWKENNEVAENFFHGYSRKMYNGIGSTL 64
          KK GL+LAM+ ++     SV  IEDE+IQLPSE  E NE AE    G SRKM+ G+GS+ 
Sbjct: 4  KKSGLVLAMIAMMLIMV-SVSGIEDELIQLPSE-LEQNEGAERLLDGVSRKMFKGLGSS- 63

Query: 65 MGRCPSGSCFSDADCG-SCICKTVSTTPYIYAKCV 99
          MG+CPSG C  D+ CG SC C+ VST+P++Y+ CV
Sbjct: 64 MGKCPSGFCTRDSFCGRSCQCRIVSTSPFVYSTCV 95

BLAST of Cla97C10G191730 vs. NCBI nr
Match: KAG6577332.1 (hypothetical protein SDJN03_24906, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.7 bits (195), Expect = 1.5e-11
Identity = 49/94 (52.13%), Postives = 58/94 (61.70%), Query Frame = 0

Query: 5  KKVGLMLAMVLIISTSAKSVPAIEDEVIQLPSEWKENNEVAENFFHGYSRKMYNGIGSTL 64
          K+ GL+LAMV ++     SV  IEDE+IQLPSE ++N                 G G   
Sbjct: 4  KRAGLVLAMVAMMLIML-SVSGIEDELIQLPSELEQN----------------EGAG--- 63

Query: 65 MGRCPSGSCFSDADCGSCICKTVSTTPYIYAKCV 99
           GRCPSGSC S ADCGSC CK VSTTP++YAKCV
Sbjct: 64 -GRCPSGSCSSHADCGSCRCKVVSTTPFLYAKCV 76

BLAST of Cla97C10G191730 vs. NCBI nr
Match: KAG6600683.1 (L-type lectin-domain containing receptor kinase IX.1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 66.2 bits (160), Expect = 1.7e-07
Identity = 42/96 (43.75%), Postives = 59/96 (61.46%), Query Frame = 0

Query: 5  KKVGLMLAMVLIISTSAKSV--PAIEDEVIQLPSEWKENNEVAENFF-HGYSRKMYNGIG 64
          KKVGL++AM+ ++  S  SV   A+++E+IQLPS+  E NEVA+N F +G SRKM+  +G
Sbjct: 4  KKVGLVVAMLCMMLMSMSSVVQSAVDNEIIQLPSQQNE-NEVAQNHFNYGCSRKMFKSVG 63

Query: 65 STLMGRCPSGSCFSDADCGSCICKTVSTTPYIYAKC 98
                CP+  C SD +C  C CKT     Y   +C
Sbjct: 64 --FKNSCPTLLCSSDMECCPCRCKTEYVDDYPIKRC 96

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6577331.11.9e-1454.74hypothetical protein SDJN03_24905, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6577332.11.5e-1152.13hypothetical protein SDJN03_24906, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6600683.11.7e-0743.75L-type lectin-domain containing receptor kinase IX.1, partial [Cucurbita argyros... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C10G191730.1Cla97C10G191730.1mRNA