Cla97C10G190790 (gene) Watermelon (97103) v2.5

Overview
NameCla97C10G190790
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionRING-type domain-containing protein
LocationCla97Chr10: 9222734 .. 9223162 (-)
RNA-Seq ExpressionCla97C10G190790
SyntenyCla97C10G190790
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCATAATCGTCATCTTTGGCTTTTTCTTGACAATTTTTGTATTCATCTCTTTCTTCGGCTTGTGCCTCTACATCTGTTTCCAATGTTACAACCAGGGGTTCCCAGAAGGCGAGCAACGTGGTAGTGGGAATGGAGAAACGACGACGACGACAACAACAACAACGACAATGATGGATCCTGAGGAGCAGAATCGTCAGACTCAAATGGCTATGGAGAAATTGACAAAACCATCAGCAGAGTATGATTACGAGGAAAATGATGAATCTCCATCAACATTGAGTGAATGTGCGATTTGTTTGGAGGAATTTCAAGAAAGGGTCTCGTGTCGAGTTTTTCCTAATTGCAAACATATGTTTCATACTCATTGCATTATCAATTGGTTAGGGATTAATCAAACTTGTCCAATATGTCGAACTCAGTTGTAG

mRNA sequence

ATGCCCATAATCGTCATCTTTGGCTTTTTCTTGACAATTTTTGTATTCATCTCTTTCTTCGGCTTGTGCCTCTACATCTGTTTCCAATGTTACAACCAGGGGTTCCCAGAAGGCGAGCAACGTGGTAGTGGGAATGGAGAAACGACGACGACGACAACAACAACAACGACAATGATGGATCCTGAGGAGCAGAATCGTCAGACTCAAATGGCTATGGAGAAATTGACAAAACCATCAGCAGAGTATGATTACGAGGAAAATGATGAATCTCCATCAACATTGAGTGAATGGATTAATCAAACTTGTCCAATATGTCGAACTCAGTTGTAG

Coding sequence (CDS)

ATGCCCATAATCGTCATCTTTGGCTTTTTCTTGACAATTTTTGTATTCATCTCTTTCTTCGGCTTGTGCCTCTACATCTGTTTCCAATGTTACAACCAGGGGTTCCCAGAAGGCGAGCAACGTGGTAGTGGGAATGGAGAAACGACGACGACGACAACAACAACAACGACAATGATGGATCCTGAGGAGCAGAATCGTCAGACTCAAATGGCTATGGAGAAATTGACAAAACCATCAGCAGAGTATGATTACGAGGAAAATGATGAATCTCCATCAACATTGAGTGAATGGATTAATCAAACTTGTCCAATATGTCGAACTCAGTTGTAG

Protein sequence

MPIIVIFGFFLTIFVFISFFGLCLYICFQCYNQGFPEGEQRGSGNGETTTTTTTTTTMMDPEEQNRQTQMAMEKLTKPSAEYDYEENDESPSTLSEWINQTCPICRTQL
Homology
BLAST of Cla97C10G190790 vs. NCBI nr
Match: KAG6577374.1 (RING-H2 finger protein ATL8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 113.2 bits (282), Expect = 1.4e-21
Identity = 71/143 (49.65%), Postives = 87/143 (60.84%), Query Frame = 0

Query: 1   MPIIVIFGFFLTIFVFISFFGLCLYICFQCYNQGFPEGEQRGSGNGETTTTTTTTTTM-M 60
           M IIVIFG FL I V ++FF LCLYICFQCYN GFPE +   + +GE+TTTTT  T++ +
Sbjct: 1   MHIIVIFGLFLIILVILTFFALCLYICFQCYNHGFPEDDSIITESGESTTTTTRATSVAV 60

Query: 61  DPEEQNRQTQMAMEKLTKPSAEYDYEENDESPSTLSE----------------------- 110
           D  E NR  Q+AMEKLTKPS EYDYE+++E+ S LS+                       
Sbjct: 61  DSNEINRHIQIAMEKLTKPSTEYDYEKDNEAVSVLSQCAICLEEFENTDLCRVFPNCKHM 120

BLAST of Cla97C10G190790 vs. NCBI nr
Match: XP_011652743.1 (uncharacterized protein LOC105435076 [Cucumis sativus] >KGN56259.2 hypothetical protein Csa_011552 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 3.3e-15
Identity = 62/116 (53.45%), Postives = 67/116 (57.76%), Query Frame = 0

Query: 30  CYN-QGFPEGEQRGSGNGETTTTTTT--TTTMMDPEEQNRQTQMAMEKLTKPSAEYDYEE 89
           C N  GF E EQRG+ N E T TTTT  TT + DPEE+NRQ QMAMEKLTKPSA Y+ EE
Sbjct: 153 CQNFPGFSESEQRGNRNEEMTMTTTTVATTMVADPEERNRQLQMAMEKLTKPSAYYNCEE 212

Query: 90  NDESPSTLSE-------------------------------W--INQTCPICRTQL 110
           NDESPSTLSE                               W  INQTCPICRT+L
Sbjct: 213 NDESPSTLSECTICLEDLGERVSCRVFPNCKHIFHTHCIINWLEINQTCPICRTKL 268

BLAST of Cla97C10G190790 vs. NCBI nr
Match: KAG7031368.1 (RING-H2 finger protein ATL52, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 83.2 bits (204), Expect = 1.5e-12
Identity = 62/146 (42.47%), Postives = 74/146 (50.68%), Query Frame = 0

Query: 1   MPIIVIFGFFLTIFVFISFFGLCLYICFQCYNQGFPEGEQ--RGSGNGETTTTTTTTTTM 60
           MPIIV+FGF LT+ V  SFF LC+YICFQC+ QGF    Q  R +G+G  T   T   T 
Sbjct: 162 MPIIVLFGFVLTVLVLFSFFSLCIYICFQCHTQGFIGATQTHRDNGHGMATRAATRAAT- 221

Query: 61  MDPEEQNRQTQMAMEKLTKPSAEYDYEEND--ESPSTLSE-------------------- 110
           ++PEE N QT   MEKLT P  +Y  +END   + S L+E                    
Sbjct: 222 VNPEELNHQTHRVMEKLTMPLVDYGCKENDGEVASSELNECAICLEAFGNRVSCRVFPNC 281

BLAST of Cla97C10G190790 vs. NCBI nr
Match: KAG6600728.1 (putative RING-H2 finger protein ATL19, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 83.2 bits (204), Expect = 1.5e-12
Identity = 62/146 (42.47%), Postives = 74/146 (50.68%), Query Frame = 0

Query: 1   MPIIVIFGFFLTIFVFISFFGLCLYICFQCYNQGFPEGEQ--RGSGNGETTTTTTTTTTM 60
           MPIIV+FGF LT+ V  SFF LC+YICFQC+ QGF    Q  R +G+G  T   T   T 
Sbjct: 1   MPIIVLFGFVLTVLVLFSFFSLCIYICFQCHTQGFIGATQTHRDNGHGMATRAATRAAT- 60

Query: 61  MDPEEQNRQTQMAMEKLTKPSAEYDYEEND--ESPSTLSE-------------------- 110
           ++PEE N QT   MEKLT P  +Y  +END   + S L+E                    
Sbjct: 61  VNPEELNHQTHRVMEKLTMPLVDYGCKENDGEVASSELNECAICLEAFGNRVSCRVFPNC 120

BLAST of Cla97C10G190790 vs. ExPASy TrEMBL
Match: A0A0A0L7Y8 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G104940 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.3e-06
Identity = 34/52 (65.38%), Postives = 38/52 (73.08%), Query Frame = 0

Query: 58  MMDPEEQNRQTQMAMEKLTKPSAEYDYEENDESPSTLSEWINQTCPICRTQL 110
           ++ P E+NRQ QMAMEKLTKPSA Y+ EENDESPSTLSE     C IC   L
Sbjct: 2   LLQPGERNRQLQMAMEKLTKPSAYYNCEENDESPSTLSE-----CTICLEDL 48

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6577374.11.4e-2149.65RING-H2 finger protein ATL8, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_011652743.13.3e-1553.45uncharacterized protein LOC105435076 [Cucumis sativus] >KGN56259.2 hypothetical ... [more]
KAG7031368.11.5e-1242.47RING-H2 finger protein ATL52, partial [Cucurbita argyrosperma subsp. argyrosperm... [more]
KAG6600728.11.5e-1242.47putative RING-H2 finger protein ATL19, partial [Cucurbita argyrosperma subsp. so... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L7Y82.3e-0665.38RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G104940 P... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..70

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C10G190790.2Cla97C10G190790.2mRNA