Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGATGAACGAGAAAGTGAATGGAAAAATGGGGATGAGAATTATGGTGGGATTGGCACCAATTTTGGTGGTGGTGATTTTGTGGGTAACATCAAAATCATCTCAATTTTTTCAAAGTAGTAATCTTTTTGGAAGTCCTCATTTCATATTCTCAATCTTCAACTCCATAATTCTTCTCATAACTGTGAGAAACCATGATGAGCCACAACCTCATGAACAATTTGAGATAATGGAACTTATTCTTCAATTATCTCCCTATCATAAGCCTCATCAAGACATTGAATTTAGTGCTCGTGAAGATACAAGAGAAGATGACGGTGAAAATGCCGAATATGGAAACCAAAATGATCAGAAAGATCAAGACGATAGTGATGAAGATGAAATCGAGCAATGGAATGAGAAAGAAGATGAAGATCATGAAGATAACGAGCGTGACGACGATCAAGATGAGGTCGAGGAGTGGGACGAGAAAGAGGAGGAAGAAGAAGAATTGGAGAAGAGGATTGAAGAATTCATAGCAAAGGTGAACAAGAGATGGAGAGAAGAGAAGTTGAGAGATCATTTTCTTATTCAAATTTGTTCTAGTAACTATGTTAGTAGTACCTGAAATTAAATTATTAATTTCTTTTTCCATTCATAATTTTGTTACTCATTTATATTATATGATCAAGCTTTTTTTTTGGTACTAATATTATATGATGAAGCTCTATTTTGCATGATGCCAAAAGAATATATATACATATAAAGATTTCTATTCCTT
mRNA sequence
TGATGAACGAGAAAGTGAATGGAAAAATGGGGATGAGAATTATGGTGGGATTGGCACCAATTTTGGTGGTGGTGATTTTGTGGGTAACATCAAAATCATCTCAATTTTTTCAAAGTAGTAATCTTTTTGGAAGTCCTCATTTCATATTCTCAATCTTCAACTCCATAATTCTTCTCATAACTGTGAGAAACCATGATGAGCCACAACCTCATGAACAATTTGAGATAATGGAACTTATTCTTCAATTATCTCCCTATCATAAGCCTCATCAAGACATTGAATTTAGTGCTCGTGAAGATACAAGAGAAGATGACGGTGAAAATGCCGAATATGGAAACCAAAATGATCAGAAAGATCAAGACGATAGTGATGAAGATGAAATCGAGCAATGGAATGAGAAAGAAGATGAAGATCATGAAGATAACGAGCGTGACGACGATCAAGATGAGGTCGAGGAGTGGGACGAGAAAGAGGAGGAAGAAGAAGAATTGGAGAAGAGGATTGAAGAATTCATAGCAAAGGTGAACAAGAGATGGAGAGAAGAGAAGTTGAGAGATCATTTTCTTATTCAAATTTGTTCTAGTAACTATGTTAGTAGTACCTGAAATTAAATTATTAATTTCTTTTTCCATTCATAATTTTGTTACTCATTTATATTATATGATCAAGCTTTTTTTTTGGTACTAATATTATATGATGAAGCTCTATTTTGCATGATGCCAAAAGAATATATATACATATAAAGATTTCTATTCCTT
Coding sequence (CDS)
ATGAACGAGAAAGTGAATGGAAAAATGGGGATGAGAATTATGGTGGGATTGGCACCAATTTTGGTGGTGGTGATTTTGTGGGTAACATCAAAATCATCTCAATTTTTTCAAAGTAGTAATCTTTTTGGAAGTCCTCATTTCATATTCTCAATCTTCAACTCCATAATTCTTCTCATAACTGTGAGAAACCATGATGAGCCACAACCTCATGAACAATTTGAGATAATGGAACTTATTCTTCAATTATCTCCCTATCATAAGCCTCATCAAGACATTGAATTTAGTGCTCGTGAAGATACAAGAGAAGATGACGGTGAAAATGCCGAATATGGAAACCAAAATGATCAGAAAGATCAAGACGATAGTGATGAAGATGAAATCGAGCAATGGAATGAGAAAGAAGATGAAGATCATGAAGATAACGAGCGTGACGACGATCAAGATGAGGTCGAGGAGTGGGACGAGAAAGAGGAGGAAGAAGAAGAATTGGAGAAGAGGATTGAAGAATTCATAGCAAAGGTGAACAAGAGATGGAGAGAAGAGAAGTTGAGAGATCATTTTCTTATTCAAATTTGTTCTAGTAACTATGTTAGTAGTACCTGA
Protein sequence
MNEKVNGKMGMRIMVGLAPILVVVILWVTSKSSQFFQSSNLFGSPHFIFSIFNSIILLITVRNHDEPQPHEQFEIMELILQLSPYHKPHQDIEFSAREDTREDDGENAEYGNQNDQKDQDDSDEDEIEQWNEKEDEDHEDNERDDDQDEVEEWDEKEEEEEELEKRIEEFIAKVNKRWREEKLRDHFLIQICSSNYVSST
Homology
BLAST of Cla97C10G187750 vs. NCBI nr
Match:
XP_038876855.1 (glutamic acid-rich protein-like [Benincasa hispida])
HSP 1 Score: 237.3 bits (604), Expect = 1.2e-58
Identity = 154/204 (75.49%), Postives = 170/204 (83.33%), Query Frame = 0
Query: 3 EKVNGKMGMRIMVGLAPILVVVILWVTSKSSQFFQSSNLFGSPHFIFSIFNSIILLITVR 62
EKVNGKMGMRIMVGL PILVV+ILWVTSKSSQ F SS+LF SPH IFSIFNSIILLIT+R
Sbjct: 9 EKVNGKMGMRIMVGLVPILVVMILWVTSKSSQIFLSSHLFVSPHLIFSIFNSIILLITMR 68
Query: 63 NHDEPQPHEQFEIMELILQLSPYHKPHQDIEFSA---REDTR---EDDGENAEYGNQNDQ 122
NH EP P EQFEIMEL LQLSPYHKPHQDIEFSA REDTR ED+ +N EYGN+N++
Sbjct: 69 NH-EPHPREQFEIMELTLQLSPYHKPHQDIEFSACDQREDTREEDEDEDKNVEYGNKNEK 128
Query: 123 KDQDDSDEDEIEQWNEKEDEDHEDNERDDDQDEVEEWDEKEEEEEELEKRIEEFIAKVNK 182
+D + +DEDEI+Q NEKE ED EDN+RD+ D EEE+EELEKRIEEFIAKVNK
Sbjct: 129 ED-EFNDEDEIKQLNEKEHED-EDNDRDEVGD--------EEEDEELEKRIEEFIAKVNK 188
Query: 183 RWREEKLRDHFLIQICSSNYVSST 201
RWREEKLRDH LIQICS+N VSST
Sbjct: 189 RWREEKLRDHLLIQICSNN-VSST 200
BLAST of Cla97C10G187750 vs. NCBI nr
Match:
KAE8650077.1 (hypothetical protein Csa_010314 [Cucumis sativus])
HSP 1 Score: 204.1 bits (518), Expect = 1.1e-48
Identity = 136/199 (68.34%), Postives = 161/199 (80.90%), Query Frame = 0
Query: 9 MGMRIMVGLAPILVVVILWVTSKSSQFFQSSNLFGSPHFIFSIFNSIILLITVRNHDEPQ 68
MGMRIM+GL PILVV++L VTSKSSQFF LFGSPHFIFSIFNSIILLIT+RNH+EPQ
Sbjct: 1 MGMRIMLGLIPILVVMVLLVTSKSSQFFL---LFGSPHFIFSIFNSIILLITMRNHEEPQ 60
Query: 69 PHEQFEIMELILQLSPYH-KP-HQDIEF-SAREDTR--EDDGE---NAEYGNQNDQKDQD 128
PHEQF+IMELILQLSPYH KP HQD EF +D R +DDG+ + +Y N+N+++D+
Sbjct: 61 PHEQFDIMELILQLSPYHNKPHHQDTEFHDDHKDKRVEDDDGDVNTDDQYDNRNEKEDK- 120
Query: 129 DSDEDEIEQWNEKEDEDHEDNERDDDQDEVEEWDEKEEEEEELEKRIEEFIAKVNKRWRE 188
SDEDE+++W+EKE E DD+ DE E WDE EEE+EELE RIEEFIAKVNKRWRE
Sbjct: 121 VSDEDEMKEWDEKEGE-------DDEYDEAEGWDE-EEEDEELEMRIEEFIAKVNKRWRE 180
Query: 189 EKLRDHFLIQICSSNYVSS 200
EKLRDH LIQICS+N V++
Sbjct: 181 EKLRDHLLIQICSTNNVTN 187
BLAST of Cla97C10G187750 vs. NCBI nr
Match:
XP_023005569.1 (acidic leucine-rich nuclear phosphoprotein 32 family member B-like [Cucurbita maxima])
HSP 1 Score: 125.2 bits (313), Expect = 6.5e-25
Identity = 98/196 (50.00%), Postives = 122/196 (62.24%), Query Frame = 0
Query: 9 MGMRIMVGLAPIL-----VVVILWVTSKSSQFFQSSNLFGSPHFIFSIFNSIILLITVRN 68
MGMRIMVGL ++ V+L TSKSSQ F SS L GSPHF+FSIFNSIILLI V
Sbjct: 1 MGMRIMVGLVAVMAAAAAAAVVLLATSKSSQVFLSSKLLGSPHFMFSIFNSIILLIIVTY 60
Query: 69 HDEPQPHEQFEIME---LILQLSPYHKPHQDIEFSAREDTREDDGENAEYGNQNDQKDQD 128
H P + I + + Y+ P Q+IEF A +D + D E +D
Sbjct: 61 HRPPLHQSPYHIRKGSCYLESYQGYYTPCQNIEFYACDDEHDSDDE---------YEDDS 120
Query: 129 DSDEDEIEQWNEKEDEDHEDNERD-DDQDEVEEWDEKEEEEEELEKRIEEFIAKVNKRWR 188
+++DEIEQ NE E E ++ + D DD+D+ E DEK + ++ELEKRIEEFIAKVNKRWR
Sbjct: 121 QNEKDEIEQLNEDETEQCDEEDEDVDDEDDTERCDEK-DNDDELEKRIEEFIAKVNKRWR 180
Query: 189 EEKLRDHFLIQICSSN 196
EEKLRD+ Q CSSN
Sbjct: 181 EEKLRDNLFNQFCSSN 186
BLAST of Cla97C10G187750 vs. NCBI nr
Match:
TYK19467.1 (hypothetical protein E5676_scaffold443G001210 [Cucumis melo var. makuwa])
HSP 1 Score: 121.3 bits (303), Expect = 9.3e-24
Identity = 91/152 (59.87%), Postives = 113/152 (74.34%), Query Frame = 0
Query: 61 VRNHDEPQ-PHEQFEIM--ELILQLSPYH-KPHQDIEFSAREDTRE---DDGENA----E 120
+RNH+EPQ PHEQFEIM +LIL+LSPYH KPH +DTRE DDG+N +
Sbjct: 1 MRNHEEPQRPHEQFEIMDDQLILRLSPYHNKPH-------HQDTREEDDDDGDNQNTDDQ 60
Query: 121 YGNQNDQKDQDDSD-EDEIEQWNEKEDEDHEDNERDDDQDEVEEWDEKEEEEEELEKRIE 180
Y N+N+++D+ SD EDE+++W+EKE E +D+ E E WDE EEE+EELEKRIE
Sbjct: 61 YDNRNEKEDKLISDIEDEMKEWDEKEGE--------EDEYEAERWDE-EEEDEELEKRIE 120
Query: 181 EFIAKVNKRWREEKLRDHFLIQICSSNYVSST 201
EFIAKVNKRWREEKLRDH LIQICS+N +S+T
Sbjct: 121 EFIAKVNKRWREEKLRDHLLIQICSTNVISNT 136
BLAST of Cla97C10G187750 vs. NCBI nr
Match:
KAG7028360.1 (RNA polymerase II transcription factor B subunit 5, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 111.7 bits (278), Expect = 7.4e-21
Identity = 97/201 (48.26%), Postives = 122/201 (60.70%), Query Frame = 0
Query: 9 MGMRIMVGLAPIL----------VVVILWVTSKSSQFFQSSNLFGSPHFIFSIFNSIILL 68
MGMRIMVGL ++ VV+L VTSKSSQFF S+ L GSPHF+FSIFNSIILL
Sbjct: 1 MGMRIMVGLVAVMAAAAAAAATTTVVVLLVTSKSSQFFLSTKLLGSPHFMFSIFNSIILL 60
Query: 69 ITVRNHDEPQPHEQFEIMELILQLSPYHKPH---QDIEFSAREDTREDDGENAEYGNQND 128
I V H P + I + + YH+ + Q IEF T D E + N+
Sbjct: 61 IIVTYHPPPPHQSPYHIRKGSCYVESYHEYYTTCQHIEFC----THNGDDEYED----NN 120
Query: 129 QKDQDDSDEDEIEQWNEKEDEDHEDNERDDDQDEVEEWDEKEEEEEELEKRIEEFIAKVN 188
Q ++DD D DE EQ +E EDED DD++E DE E+ ++ELEKRIEEFIAKVN
Sbjct: 121 QNEKDDRDNDETEQCDE-EDED------VDDENETRRCDE-EDNDDELEKRIEEFIAKVN 180
Query: 189 KRWREEKLRDHFLIQICSSNY 197
KRWREEKL+D+ L Q + ++
Sbjct: 181 KRWREEKLQDNLLNQFWAFSF 185
BLAST of Cla97C10G187750 vs. ExPASy TrEMBL
Match:
A0A0A0L728 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G036520 PE=4 SV=1)
HSP 1 Score: 132.1 bits (331), Expect = 2.6e-27
Identity = 93/147 (63.27%), Postives = 115/147 (78.23%), Query Frame = 0
Query: 61 VRNHDEPQPHEQFEIMELILQLSPYH-KP-HQDIEF-SAREDTR--EDDGE---NAEYGN 120
+RNH+EPQPHEQF+IMELILQLSPYH KP HQD EF +D R +DDG+ + +Y N
Sbjct: 1 MRNHEEPQPHEQFDIMELILQLSPYHNKPHHQDTEFHDDHKDKRVEDDDGDVNTDDQYDN 60
Query: 121 QNDQKDQDDSDEDEIEQWNEKEDEDHEDNERDDDQDEVEEWDEKEEEEEELEKRIEEFIA 180
+N+++D+ SDEDE+++W+EKE E DD+ DE E WDE EEE+EELE RIEEFIA
Sbjct: 61 RNEKEDK-VSDEDEMKEWDEKEGE-------DDEYDEAEGWDE-EEEDEELEMRIEEFIA 120
Query: 181 KVNKRWREEKLRDHFLIQICSSNYVSS 200
KVNKRWREEKLRDH LIQICS+N V++
Sbjct: 121 KVNKRWREEKLRDHLLIQICSTNNVTN 138
BLAST of Cla97C10G187750 vs. ExPASy TrEMBL
Match:
A0A6J1KZL9 (acidic leucine-rich nuclear phosphoprotein 32 family member B-like OS=Cucurbita maxima OX=3661 GN=LOC111498513 PE=4 SV=1)
HSP 1 Score: 125.2 bits (313), Expect = 3.1e-25
Identity = 98/196 (50.00%), Postives = 122/196 (62.24%), Query Frame = 0
Query: 9 MGMRIMVGLAPIL-----VVVILWVTSKSSQFFQSSNLFGSPHFIFSIFNSIILLITVRN 68
MGMRIMVGL ++ V+L TSKSSQ F SS L GSPHF+FSIFNSIILLI V
Sbjct: 1 MGMRIMVGLVAVMAAAAAAAVVLLATSKSSQVFLSSKLLGSPHFMFSIFNSIILLIIVTY 60
Query: 69 HDEPQPHEQFEIME---LILQLSPYHKPHQDIEFSAREDTREDDGENAEYGNQNDQKDQD 128
H P + I + + Y+ P Q+IEF A +D + D E +D
Sbjct: 61 HRPPLHQSPYHIRKGSCYLESYQGYYTPCQNIEFYACDDEHDSDDE---------YEDDS 120
Query: 129 DSDEDEIEQWNEKEDEDHEDNERD-DDQDEVEEWDEKEEEEEELEKRIEEFIAKVNKRWR 188
+++DEIEQ NE E E ++ + D DD+D+ E DEK + ++ELEKRIEEFIAKVNKRWR
Sbjct: 121 QNEKDEIEQLNEDETEQCDEEDEDVDDEDDTERCDEK-DNDDELEKRIEEFIAKVNKRWR 180
Query: 189 EEKLRDHFLIQICSSN 196
EEKLRD+ Q CSSN
Sbjct: 181 EEKLRDNLFNQFCSSN 186
BLAST of Cla97C10G187750 vs. ExPASy TrEMBL
Match:
A0A5D3D7D0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G001210 PE=4 SV=1)
HSP 1 Score: 121.3 bits (303), Expect = 4.5e-24
Identity = 91/152 (59.87%), Postives = 113/152 (74.34%), Query Frame = 0
Query: 61 VRNHDEPQ-PHEQFEIM--ELILQLSPYH-KPHQDIEFSAREDTRE---DDGENA----E 120
+RNH+EPQ PHEQFEIM +LIL+LSPYH KPH +DTRE DDG+N +
Sbjct: 1 MRNHEEPQRPHEQFEIMDDQLILRLSPYHNKPH-------HQDTREEDDDDGDNQNTDDQ 60
Query: 121 YGNQNDQKDQDDSD-EDEIEQWNEKEDEDHEDNERDDDQDEVEEWDEKEEEEEELEKRIE 180
Y N+N+++D+ SD EDE+++W+EKE E +D+ E E WDE EEE+EELEKRIE
Sbjct: 61 YDNRNEKEDKLISDIEDEMKEWDEKEGE--------EDEYEAERWDE-EEEDEELEKRIE 120
Query: 181 EFIAKVNKRWREEKLRDHFLIQICSSNYVSST 201
EFIAKVNKRWREEKLRDH LIQICS+N +S+T
Sbjct: 121 EFIAKVNKRWREEKLRDHLLIQICSTNVISNT 136
BLAST of Cla97C10G187750 vs. ExPASy TrEMBL
Match:
A0A6J1E6C0 (nucleolin-like OS=Cucurbita moschata OX=3662 GN=LOC111431005 PE=4 SV=1)
HSP 1 Score: 78.2 bits (191), Expect = 4.4e-11
Identity = 85/176 (48.30%), Postives = 105/176 (59.66%), Query Frame = 0
Query: 14 MVGLAPILVVVI-LWVTSKSSQFFQSSNLFGSPHFIFSIFNSIILLITVRNHDEPQPHEQ 73
MVGL PILVVV+ LWV+S S+LFGSP+ IFSIFN +ILL+TVRNH EP+
Sbjct: 1 MVGLVPILVVVVLLWVSS------NPSHLFGSPYIIFSIFNFMILLVTVRNH-EPR---- 60
Query: 74 FEIMELILQLSPYHKPHQDIEFSAR---EDTREDD-GENAEYGNQNDQKDQDDSDEDEIE 133
+LQ S YHK QD EFSAR ED REDD ENA+ + + ++ D D DEIE
Sbjct: 61 -----CLLQPS-YHKLCQDAEFSAREEDEDKREDDEDENAD----SSENEKIDRDRDEIE 120
Query: 134 QWNEKEDED------HEDNERDDDQ----------------DEVEEWDEKEEEEEE 163
Q NE+++ED ED +RD D+ DE E WD++EEEEEE
Sbjct: 121 QLNEEDEEDADNDGFDEDEDRDGDEIEQSNEEDEDNDSVDKDETERWDDEEEEEEE 155
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_038876855.1 | 1.2e-58 | 75.49 | glutamic acid-rich protein-like [Benincasa hispida] | [more] |
| KAE8650077.1 | 1.1e-48 | 68.34 | hypothetical protein Csa_010314 [Cucumis sativus] | [more] |
| XP_023005569.1 | 6.5e-25 | 50.00 | acidic leucine-rich nuclear phosphoprotein 32 family member B-like [Cucurbita ma... | [more] |
| TYK19467.1 | 9.3e-24 | 59.87 | hypothetical protein E5676_scaffold443G001210 [Cucumis melo var. makuwa] | [more] |
| KAG7028360.1 | 7.4e-21 | 48.26 | RNA polymerase II transcription factor B subunit 5, partial [Cucurbita argyrospe... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0L728 | 2.6e-27 | 63.27 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G036520 PE=4 SV=1 | [more] |
| A0A6J1KZL9 | 3.1e-25 | 50.00 | acidic leucine-rich nuclear phosphoprotein 32 family member B-like OS=Cucurbita ... | [more] |
| A0A5D3D7D0 | 4.5e-24 | 59.87 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A6J1E6C0 | 4.4e-11 | 48.30 | nucleolin-like OS=Cucurbita moschata OX=3662 GN=LOC111431005 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
