Cla97C10G185610 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C10G185610
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	Ribosomal L28 family
Location	Cla97Chr10: 947525 .. 950583 (-)
RNA-Seq Expression	Cla97C10G185610
Synteny	Cla97C10G185610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTTCAGAGGAAAGGAAATGATGAAGAAGATACTAAAGAAAGTTGGAGAGAAAAATTTGGCTCCTGGAGTGAAGGATTCATTGAAGAAATGTATTCCGGACAGCAAAGTAGTGATGAATAGGGCAAAGCGTGGTATCTATGCCGGCCGTCACATCCAATTTGGCAACCGTGTCAGTGAAGACGGTGGCAACAAGTATGAACCTCTTCTTTTCCTTTATGTTTCTTAAAATCTTTGGTCGAGATTTTCTCTGAATATGAATGTATTTTACTGATTTGCTGAATTCTATGGTGTTAGACCATTAGTCTCTTTGCCAGCATGAGTTAAGGCATCTCCATCTACTCCTTTCTCTGGGGTGTTGCATATTCAAATTTCCACATCCTCATTATACCGAAAAAAAAGAGATAGCTCATTTTTCTTTTTGGAAAAGAAACAATTCCATTGATAGTATGGAAGTATAAATAGGGGAGACCTCATTAGATGGATTACAATAGACCACTACAAATTGGAGAGGGGAGCGGAATAGCCAGGGAGATGGAAGAGGGGAAACATTTACATTAAAAAACTACTAAGGGAGCGTTTGGAATGCAGTTTCAAGTGTTTAATTTAAAAGATAAGTCATTTTGAAAAAATTTGGAGTGTTTAGCAACCACTCAAAATAGATTTTGAAGTGTATTTTAAACAATTTTTATCAAAAGAGTTTAAATAAAAATGAGTTTTTTGAAAAATATTTTTTTCTCAAGTTAATCCAAATGGGCCCTAAGTTAACTACATCTTCAAAAACTCTGTGATAGGGTAGTTCTTCTATCATGGAAGATCTGTTCGTTTCTTTCTTGTCATGTGATCTAGCAGAAGGCTTTAATGAAATCTCTTTGTTAGTCCGTTTGAGATCTATTATTTTTCTTTTAGTCCCTTTTAATTGGAGAAGTCCTTTGCCCCTTCTGGAGGCCTTCTTTGTAATTTCATACCATCAATGAAATTGCTTCTTATGCAAGAAAAAACAGTTAGAAGTGAAGGTGTCATAAATGAATTTAGTGCACTCTAAACTGATAGCATCAGAGACATTTGGCAGAGGCTTCTTGCTGTTACTATTTCACAACTTATATCTTTTCAATTCATGCTTCTAATTTTTCTTTTTGAGTAACAGATGATTGTTACTCATAAGTTTCGTTGGAGGAGTTATTGAATTTTTCGGTTTTCTGCTCTCATTCACTTTGTGAATAGCCATGTATGCCGATGAAAAACCGATGTTCATAGATTACTGGATCACTTATCATACTGGAACTGTGTATTCATTCATGTAAGTTTAGAAATATTGGATTTTCAACCTCAGCAGTCTGAGGTGAATTTTATCTGTTTTTTGGTGCCTTGTTTTGATGATTGTCTGGATTTGGATCTGGGGTTAGCATATGAGTCCATCGTGCTGCTACAACTCTTAACCACACTGTTGATTAGGAATTTGTAGATCTAGAGTCAAGTGGAGGTTTTATTTTGATCATGTAATTTGTTTGCTGTGAGGTTTCTATGCCCCACTCCTATGTCAAATTTATATATATGTGGAAGAACCCTTAGGGTGGGGAGACTGGGACATGAGTTGGGGTTCAGCATGGGTTTGGCTTTCTAAGCTCAATGGTCTAAACTTCTTTTTTTGATATCCGTGAGTGTCCGGGCCAGTTTACACGCACTTCGACTAATCTCACGGGACAACCCGCCTGACCCTACAATATTTGGGTGTCAAAGAAACTCATAGGAAATTAATTCCTAGGTAGGTGGCCACCATGGATTGAATCCTTGATCTCTTAGTCATTTATTGAGACTATGTCTCCTTTTTACCACTAGGCTAATCCATGATGGTTAGTCTCAACCTATTGTTTGACAACCCGAGTTCAATTAAAGAAACCAACCAGCTTGAACAACAGCCTACTATTCCCCCTCCACCCTACAATTTTCAACTCAAGCTTCCTAGATTTGCACTCCAAACACAGAAGAACCTATGACCCAAATGACCCATTAGATCGTTAAAGAAGAGAAAATGAACTTAAAGCGGTGTTTCCTTCTGCGAGCAAATTTTATTGGTTTTGCTGTATATTTGGCCGTTTATTTACTTCTCTACGGCATGGCTCTCTTTCTCTTGTATTCAGAAATTTGAGGCACAATATAATAGTTTTGTTTGGTCAACTTGGAGTGTAATTCTCGATCTTCATAGACAAGTAACAGGATTCTCAATCTTTTCTTATATTCACCATCTATCTAGCACTTAACTGGTGTAAATTGAGTCATCTCTTTTGTACTTTTAGCTTACGTAATCTTTTGTCCAACTGAAAATCTTTTTTTAATCCATTGGAATGACCTCATCATTTTGTAAATGGTTCGTTTTCCTACAAAAGAGAAAAAAAAAGGAAAGAGAAAAAAAAAAAAAAAGCCGTTTTCTTCCATCGTATTGGCTCTATGTCTATATAAGGGTTCGGTGCCTTTTTCAATTCTTTAGCTCACAAACCTTCTTATTGGCATGATCTTATACTGTTTCATTTTGTCATGCGATCATTTTATCAATATTGGAGTATTTAACCTTTATGTGCTGGTGCTTATAGATCAAGGAGGAGTTGGAAACCAAACGTACAAGAGAAGCGACTTTTCAGTTATATTCTAGACCGCCATATTCGAGTTAAAGTCACCACTCATGCCCTTCGATGCATCGACAAGGCCGGTGGGATTGATGAGTATCTGCTGAAAACACCATACCACAAAATGGACACTGAAATTGGGCTGTTTTGGAAGGCAAAGATTGAGAAGATGTATGAAGAACTCGGGCAGACAGAGGTCGTTTTCTTCTCGCCAGAGGACGAAGCTAAATTTGAACAAGGCTTTAGAGAACTTAAATTATCCGAGAGGGCAGCGCGAAAGGAGGCAAGAAGACAGATGTATGGCAGTTCAACCAAACACGATCAGATCGAAGAGAGCCAAGAAAACCACCATGGATCTAGTGAGGAAGCTGCAAGTTCTGAAGGAGGCTCCCATGGTGATGATGGTCCTCAGCAGAGGGTTGCCAATTTCTAA

mRNA sequence

ATGGCCTTCAGAGGAAAGGAAATGATGAAGAAGATACTAAAGAAAGTTGGAGAGAAAAATTTGGCTCCTGGAGTGAAGGATTCATTGAAGAAATGTATTCCGGACAGCAAAGTAGTGATGAATAGGGCAAAGCGTGGTATCTATGCCGGCCGTCACATCCAATTTGGCAACCGTGTCAGTGAAGACGGTGGCAACAAATCAAGGAGGAGTTGGAAACCAAACGTACAAGAGAAGCGACTTTTCAGTTATATTCTAGACCGCCATATTCGAGTTAAAGTCACCACTCATGCCCTTCGATGCATCGACAAGGCCGGTGGGATTGATGAGTATCTGCTGAAAACACCATACCACAAAATGGACACTGAAATTGGGCTGTTTTGGAAGGCAAAGATTGAGAAGATGTATGAAGAACTCGGGCAGACAGAGGTCGTTTTCTTCTCGCCAGAGGACGAAGCTAAATTTGAACAAGGCTTTAGAGAACTTAAATTATCCGAGAGGGCAGCGCGAAAGGAGGCAAGAAGACAGATGTATGGCAGTTCAACCAAACACGATCAGATCGAAGAGAGCCAAGAAAACCACCATGGATCTAGTGAGGAAGCTGCAAGTTCTGAAGGAGGCTCCCATGGTGATGATGGTCCTCAGCAGAGGGTTGCCAATTTCTAA

Coding sequence (CDS)

ATGGCCTTCAGAGGAAAGGAAATGATGAAGAAGATACTAAAGAAAGTTGGAGAGAAAAATTTGGCTCCTGGAGTGAAGGATTCATTGAAGAAATGTATTCCGGACAGCAAAGTAGTGATGAATAGGGCAAAGCGTGGTATCTATGCCGGCCGTCACATCCAATTTGGCAACCGTGTCAGTGAAGACGGTGGCAACAAATCAAGGAGGAGTTGGAAACCAAACGTACAAGAGAAGCGACTTTTCAGTTATATTCTAGACCGCCATATTCGAGTTAAAGTCACCACTCATGCCCTTCGATGCATCGACAAGGCCGGTGGGATTGATGAGTATCTGCTGAAAACACCATACCACAAAATGGACACTGAAATTGGGCTGTTTTGGAAGGCAAAGATTGAGAAGATGTATGAAGAACTCGGGCAGACAGAGGTCGTTTTCTTCTCGCCAGAGGACGAAGCTAAATTTGAACAAGGCTTTAGAGAACTTAAATTATCCGAGAGGGCAGCGCGAAAGGAGGCAAGAAGACAGATGTATGGCAGTTCAACCAAACACGATCAGATCGAAGAGAGCCAAGAAAACCACCATGGATCTAGTGAGGAAGCTGCAAGTTCTGAAGGAGGCTCCCATGGTGATGATGGTCCTCAGCAGAGGGTTGCCAATTTCTAA

Protein sequence

MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVSEDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMDTEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGSSTKHDQIEESQENHHGSSEEAASSEGGSHGDDGPQQRVANF

Homology

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BLAST of Cla97C10G185610 vs. NCBI nr
Match: XP_038876561.1 (uncharacterized protein LOC120068991 [Benincasa hispida])

HSP 1 Score: 407.9 bits (1047), Expect = 5.5e-110
Identity = 207/219 (94.52%), Postives = 213/219 (97.26%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSK+VMNRA RGIYAGRHI+FGNRVS
Sbjct: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKIVMNRANRGIYAGRHIRFGNRVS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGSS 180
           TEIGLFWK KIEKMYEELGQ EVVFFSPEDEAKFEQGFRELKL+ERAARKEARRQMYGSS
Sbjct: 121 TEIGLFWKTKIEKMYEELGQMEVVFFSPEDEAKFEQGFRELKLTERAARKEARRQMYGSS 180

Query: 181 TKHDQIEESQENHHGSSEEAASSEGGSHGDDGPQQRVAN 220
           TKHDQI+E QE+ HGSSEEAASSEGGSHGDDG QQ+VAN
Sbjct: 181 TKHDQIKEGQEDRHGSSEEAASSEGGSHGDDGHQQKVAN 219

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BLAST of Cla97C10G185610 vs. NCBI nr
Match: XP_022923524.1 (uncharacterized protein LOC111431195 [Cucurbita moschata])

HSP 1 Score: 397.5 bits (1020), Expect = 7.4e-107
Identity = 201/219 (91.78%), Postives = 210/219 (95.89%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKKILKKVGE NLAPGVKDSLKKCIPDSK+VMNRAKRGI+AGRHIQFGNR+S
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGSS 180
           TEIGLFWKAKIEK+YEELGQ EVVFFSPEDEAKFEQGFR+LKLSERAARKEARR+MYGSS
Sbjct: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSS 180

Query: 181 TKHDQIEESQENHHGSSEEAASSEGGSHGDDGPQQRVAN 220
           T+HDQIEE Q +  GSSEE A SEGGSHGDDGPQQ VAN
Sbjct: 181 TQHDQIEEGQADRAGSSEEVAGSEGGSHGDDGPQQCVAN 219

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BLAST of Cla97C10G185610 vs. NCBI nr
Match: KAG6577758.1 (hypothetical protein SDJN03_25332, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 395.2 bits (1014), Expect = 3.7e-106
Identity = 200/219 (91.32%), Postives = 209/219 (95.43%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKKILKKVGE NLAPGVKDSLKKCIPDSK+VMNRAKRGI+AGRHIQFGNR+S
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGSS 180
           TEIGLFWKAKIEK+YEELGQ EVVFFSPEDEAKFEQGFR+LKLSERAARKEARR+MYGS 
Sbjct: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSL 180

Query: 181 TKHDQIEESQENHHGSSEEAASSEGGSHGDDGPQQRVAN 220
           T+HDQIEE Q +  GSSEE A SEGGSHGDDGPQQ VAN
Sbjct: 181 TQHDQIEEGQADRAGSSEEVAGSEGGSHGDDGPQQCVAN 219

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BLAST of Cla97C10G185610 vs. NCBI nr
Match: XP_023553194.1 (uncharacterized protein LOC111810681 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 387.9 bits (995), Expect = 5.9e-104
Identity = 197/219 (89.95%), Postives = 207/219 (94.52%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKKILKKVGE NLAPGVKDSLKKCIPDSK+VMNRAKRGI+AGRHIQFGNR+S
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR+WKPNVQ KRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRNWKPNVQGKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGSS 180
           TEIGLFWKAKIEK+YEELGQ EVVFFSPEDEAKFEQGFR+LKLSERAARKEARR+MYGSS
Sbjct: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSS 180

Query: 181 TKHDQIEESQENHHGSSEEAASSEGGSHGDDGPQQRVAN 220
           T+HDQIEE Q +   SSEE A SEGGSHG DGPQQ V+N
Sbjct: 181 TQHDQIEEGQADRAESSEEVAGSEGGSHGGDGPQQWVSN 219

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BLAST of Cla97C10G185610 vs. NCBI nr
Match: XP_022965371.1 (uncharacterized protein LOC111465250 [Cucurbita maxima])

HSP 1 Score: 381.7 bits (979), Expect = 4.2e-102
Identity = 195/211 (92.42%), Postives = 201/211 (95.26%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKKILKKVGE NLAPGVKDSLKKCIPDSKVVMNRAKRGI+AGRHIQFGNRVS
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKVVMNRAKRGIFAGRHIQFGNRVS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGSS 180
           TEIGLFWKAKIEK+YEELGQ EVVFFSPEDEAKFEQGFR+LKLSERAARKE RR+MYGSS
Sbjct: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKETRRRMYGSS 180

Query: 181 TKHDQIEESQENHHGSSEEAASSEGGSHGDD 212
           T+ DQIEE Q +  GSSEE A SEGGSHGDD
Sbjct: 181 TQRDQIEEGQADRVGSSEEVAGSEGGSHGDD 211

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BLAST of Cla97C10G185610 vs. ExPASy Swiss-Prot
Match: P36525 (54S ribosomal protein L24, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MRPL24 PE=1 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 5.5e-12
Identity = 37/88 (42.05%), Postives = 53/88 (60.23%), Query Frame = 0


Query: 30  KKCIPDSKV----VMNRAKRGIYAGRHIQFGNRVSEDGGNKSRRSWKPNVQEKRLFSYIL 89
           +K  PD K     +  ++ +G+Y G  +QFGN +SE    K+R+ W PNV +K L+S  L
Sbjct: 52  RKKFPDYKYGESNIFKQSNKGLYGGSFVQFGNNISESKA-KTRKKWLPNVVKKGLWSETL 111

Query: 90  DRHIRVKVTTHALRCIDKAGGIDEYLLK 114
           +R I +K+T   L+ I K GGID YL K
Sbjct: 112 NRKISIKMTAKVLKTISKEGGIDNYLTK 138

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BLAST of Cla97C10G185610 vs. ExPASy Swiss-Prot
Match: A0L5U1 (50S ribosomal protein L28 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) OX=156889 GN=rpmB PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.1e-10
Identity = 32/71 (45.07%), Postives = 46/71 (64.79%), Query Frame = 0


Query: 43  AKRGIYAGRHIQFGNRVSEDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCID 102
           A++    G+  Q GN+VS     K+RR W PN+Q K L+S  L + ++V ++T ALR +D
Sbjct: 2   ARKRTLGGKAPQAGNKVSH-SQRKTRRQWMPNIQTKALWSITLGQSVKVTISTSALRSVD 61

Query: 103 KAGGIDEYLLK 114
            AGG+D YLLK
Sbjct: 62  NAGGLDNYLLK 71

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BLAST of Cla97C10G185610 vs. ExPASy Swiss-Prot
Match: A9HS05 (50S ribosomal protein L28 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / CCUG 37298 / CIP 103539 / LMG 7603 / PAl5) OX=272568 GN=rpmB PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.3e-09
Identity = 32/80 (40.00%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 43  AKRGIYAGRHIQFGNRVSEDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCID 102
           ++R    G+ +  GN VS    NKSRR + PN+QE  L S IL   +R++++T+ +R ++
Sbjct: 2   SRRCQITGKGVLTGNNVSH-ANNKSRRRFLPNLQETSLLSDILGSAVRLRLSTNGIRTVE 61

Query: 103 KAGGIDEYLLKTPYHKMDTE 123
             GG+D +LL TP  K+ TE
Sbjct: 62  HNGGLDAFLLSTPNRKLPTE 80

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BLAST of Cla97C10G185610 vs. ExPASy Swiss-Prot
Match: Q5FUP5 (50S ribosomal protein L28 OS=Gluconobacter oxydans (strain 621H) OX=290633 GN=rpmB PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.7e-09
Identity = 34/99 (34.34%), Postives = 55/99 (55.56%), Query Frame = 0


Query: 43  AKRGIYAGRHIQFGNRVSEDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCID 102
           ++R    G+ +  GN VS    NKSRR + PN+QE  L S IL   +R++++T  +R ++
Sbjct: 2   SRRCQITGKGVLTGNNVSH-ANNKSRRRFLPNLQETTLISDILGASVRMRLSTDGIRTVE 61

Query: 103 KAGGIDEYLLKTPYHKMDTEIGLFWKAKIEKMYEELGQT 142
             GG+D +LL TP  K+ TE  +  +  +     +  QT
Sbjct: 62  HNGGLDSFLLGTPNRKLPTEAQVIKRRILRVQERKAAQT 99

[Close]

BLAST of Cla97C10G185610 vs. ExPASy Swiss-Prot
Match: O60091 (54S ribosomal protein L24, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mrpl24 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 9.7e-09
Identity = 40/107 (37.38%), Postives = 56/107 (52.34%), Query Frame = 0


Query: 8   MMKKILKKVGEKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVSEDGGNKS 67
           M  K+L+K+    L   VK  +    P SK   N     +Y G   + GN      G+K+
Sbjct: 1   MASKLLRKLAYPTLP--VKGKIYD--PFSKFQQN-----LYGGSKTEAGNNKIPKFGHKT 60

Query: 68  RRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKT 115
           RR W PN   K L+S +L+    + VT+  LR IDK GG+DEYL+K+
Sbjct: 61  RRVWIPNGHSKWLYSNVLEEKFHLYVTSRVLRTIDKEGGLDEYLVKS 98

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BLAST of Cla97C10G185610 vs. ExPASy TrEMBL
Match: A0A6J1E6M9 (uncharacterized protein LOC111431195 OS=Cucurbita moschata OX=3662 GN=LOC111431195 PE=3 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 3.6e-107
Identity = 201/219 (91.78%), Postives = 210/219 (95.89%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKKILKKVGE NLAPGVKDSLKKCIPDSK+VMNRAKRGI+AGRHIQFGNR+S
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGSS 180
           TEIGLFWKAKIEK+YEELGQ EVVFFSPEDEAKFEQGFR+LKLSERAARKEARR+MYGSS
Sbjct: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSS 180

Query: 181 TKHDQIEESQENHHGSSEEAASSEGGSHGDDGPQQRVAN 220
           T+HDQIEE Q +  GSSEE A SEGGSHGDDGPQQ VAN
Sbjct: 181 TQHDQIEEGQADRAGSSEEVAGSEGGSHGDDGPQQCVAN 219

[Close]

BLAST of Cla97C10G185610 vs. ExPASy TrEMBL
Match: A0A6J1HLI0 (uncharacterized protein LOC111465250 OS=Cucurbita maxima OX=3661 GN=LOC111465250 PE=3 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 2.0e-102
Identity = 195/211 (92.42%), Postives = 201/211 (95.26%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKKILKKVGE NLAPGVKDSLKKCIPDSKVVMNRAKRGI+AGRHIQFGNRVS
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKVVMNRAKRGIFAGRHIQFGNRVS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGSS 180
           TEIGLFWKAKIEK+YEELGQ EVVFFSPEDEAKFEQGFR+LKLSERAARKE RR+MYGSS
Sbjct: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKETRRRMYGSS 180

Query: 181 TKHDQIEESQENHHGSSEEAASSEGGSHGDD 212
           T+ DQIEE Q +  GSSEE A SEGGSHGDD
Sbjct: 181 TQRDQIEEGQADRVGSSEEVAGSEGGSHGDD 211

[Close]

BLAST of Cla97C10G185610 vs. ExPASy TrEMBL
Match: A0A6J1CUG4 (uncharacterized protein LOC111014872 OS=Momordica charantia OX=3673 GN=LOC111014872 PE=3 SV=1)

HSP 1 Score: 380.6 bits (976), Expect = 4.6e-102
Identity = 195/220 (88.64%), Postives = 206/220 (93.64%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKK+LKKVGE NLAPGVK+SLKKCIPDSKVVMNRAKRGI+AGRHIQFGNRVS
Sbjct: 1   MAFRGKEMMKKVLKKVGEINLAPGVKESLKKCIPDSKVVMNRAKRGIFAGRHIQFGNRVS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDK GGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRTWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKVGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGSS 180
           TEIGLFWKAKI K+YEELGQ EVVFFSPEDEAKFEQGFRELKL+ERAARKEARRQ YGSS
Sbjct: 121 TEIGLFWKAKITKLYEELGQMEVVFFSPEDEAKFEQGFRELKLAERAARKEARRQTYGSS 180

Query: 181 TKHDQIEESQENHHGSSEEAA-SSEGGSHGDDGPQQRVAN 220
           + HDQIEE + + HG+ +EAA  SEGGSHGDDG QQ VAN
Sbjct: 181 SNHDQIEEGRADRHGTGKEAADGSEGGSHGDDGSQQWVAN 220

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BLAST of Cla97C10G185610 vs. ExPASy TrEMBL
Match: A0A0A0L1P8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G005030 PE=3 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 3.1e-98
Identity = 191/220 (86.82%), Postives = 203/220 (92.27%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKKILKKVGE NLAPGVKDSLKKCIPDSK+VM RA RGIYAGRHI+FGNRVS
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGSS 180
           TE+GLFWK+KIE +YEELG+ EVVFFSPEDE KFEQ F+ELKLSERAAR+EARRQMYGSS
Sbjct: 121 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 180

Query: 181 TKHDQIEESQENHHGSSEE-AASSEGGSHGDDGPQQRVAN 220
            K +QI+E  E  +GSSEE AASSEGGSHGDD  QQ VAN
Sbjct: 181 AKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQQWVAN 220

[Close]

BLAST of Cla97C10G185610 vs. ExPASy TrEMBL
Match: A0A1S3BK21 (54S ribosomal protein L24, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490718 PE=3 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.7e-93
Identity = 187/221 (84.62%), Postives = 202/221 (91.40%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKKILKKVGE NLAPGVK+SLKK +PDSK+VM RA RGIYAGRHI+FGNRVS
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKESLKKWVPDSKIVMGRANRGIYAGRHIRFGNRVS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPY KMD
Sbjct: 61  EDGGNKSRRKWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYQKMD 120

Query: 121 TEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGSS 180
           TE+GLFWKAKIE +YEELG+ EVVFFSPEDEAKFEQ F++LKLSERAARKEARR++YGSS
Sbjct: 121 TELGLFWKAKIETLYEELGKMEVVFFSPEDEAKFEQRFKDLKLSERAARKEARRKIYGSS 180

Query: 181 T-KHDQIEESQENHHGSSEEAASSEGGSHG-DDGPQQRVAN 220
           T K +QI+E  E+ + SSEEAASSEGGSHG DD  QQ VAN
Sbjct: 181 TNKLNQIKEGGEDTNVSSEEAASSEGGSHGDDDSHQQWVAN 221

[Close]

BLAST of Cla97C10G185610 vs. TAIR 10
Match: AT4G31460.1 (Ribosomal L28 family )

HSP 1 Score: 279.6 bits (714), Expect = 2.1e-75
Identity = 142/208 (68.27%), Postives = 167/208 (80.29%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKK++KKVG +N+ P +K+ LK C+PD+KVVM RAKRG+YAGRHIQ+GNRVS
Sbjct: 1   MAFRGKEMMKKLVKKVGAENITPELKEKLKACVPDTKVVMGRAKRGLYAGRHIQYGNRVS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR WKPNVQEKRLFSYI D HI+VKVTTHALRCIDKAGGIDEYLLKTPY KMD
Sbjct: 61  EDGGNKSRRCWKPNVQEKRLFSYIFDSHIKVKVTTHALRCIDKAGGIDEYLLKTPYQKMD 120

Query: 121 TEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARR--QMYG 180
           TE+GL+WK K+E  Y ELGQ EV FF+PEDEAK EQGF++L ++++ AR+EARR  +  G
Sbjct: 121 TEMGLYWKTKVEARYAELGQMEVAFFNPEDEAKLEQGFKDLNIAKKDARREARRTFRKKG 180

Query: 181 SSTKHDQIEESQENHHGSSEEAASSEGG 207
              K D  EE+     G SE     + G
Sbjct: 181 GGNKGD--EEASIEGGGGSESHQEDDNG 206

The following BLAST results are available for this feature:

BLAST of Cla97C10G185610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038876561.1	5.5e-110	94.52	uncharacterized protein LOC120068991 [Benincasa hispida]	[more]
XP_022923524.1	7.4e-107	91.78	uncharacterized protein LOC111431195 [Cucurbita moschata]	[more]
KAG6577758.1	3.7e-106	91.32	hypothetical protein SDJN03_25332, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023553194.1	5.9e-104	89.95	uncharacterized protein LOC111810681 [Cucurbita pepo subsp. pepo]	[more]
XP_022965371.1	4.2e-102	92.42	uncharacterized protein LOC111465250 [Cucurbita maxima]	[more]

BLAST of Cla97C10G185610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P36525	5.5e-12	42.05	54S ribosomal protein L24, mitochondrial OS=Saccharomyces cerevisiae (strain ATC...	[more]
A0L5U1	5.1e-10	45.07	50S ribosomal protein L28 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 1...	[more]
A9HS05	3.3e-09	40.00	50S ribosomal protein L28 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037...	[more]
Q5FUP5	5.7e-09	34.34	50S ribosomal protein L28 OS=Gluconobacter oxydans (strain 621H) OX=290633 GN=rp...	[more]
O60091	9.7e-09	37.38	54S ribosomal protein L24, mitochondrial OS=Schizosaccharomyces pombe (strain 97...	[more]

BLAST of Cla97C10G185610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E6M9	3.6e-107	91.78	uncharacterized protein LOC111431195 OS=Cucurbita moschata OX=3662 GN=LOC1114311...	[more]
A0A6J1HLI0	2.0e-102	92.42	uncharacterized protein LOC111465250 OS=Cucurbita maxima OX=3661 GN=LOC111465250...	[more]
A0A6J1CUG4	4.6e-102	88.64	uncharacterized protein LOC111014872 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A0A0L1P8	3.1e-98	86.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G005030 PE=3 SV=1	[more]
A0A1S3BK21	1.7e-93	84.62	54S ribosomal protein L24, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490718...	[more]

BLAST of Cla97C10G185610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G31460.1	2.1e-75	68.27	Ribosomal L28 family	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR037147	Ribosomal protein L28/L24 superfamily	GENE3D	2.30.170.40	Ribosomal protein L28/L24	coord: 47..118 e-value: 1.0E-21 score: 78.7
IPR026569	Ribosomal protein L28/L24	PFAM	PF00830	Ribosomal_L28	coord: 45..104 e-value: 1.5E-19 score: 69.9
IPR026569	Ribosomal protein L28/L24	PANTHER	PTHR13528	39S RIBOSOMAL PROTEIN L28, MITOCHONDRIAL	coord: 1..198
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 169..220
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 169..198
None	No IPR available	PANTHER	PTHR13528:SF11	BNAC03G67590D PROTEIN	coord: 1..198
IPR001383	Ribosomal protein L28	HAMAP	MF_00373	Ribosomal_L28	coord: 42..110 score: 14.202765
IPR034704	L28p-like	SUPERFAMILY	143800	L28p-like	coord: 43..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C10G185610.1	Cla97C10G185610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome