Cla97C09G184485 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C09G184485
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	Cla97Chr09: 37604713 .. 37605072 (-)
RNA-Seq Expression	Cla97C09G184485
Synteny	Cla97C09G184485

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGGCACAAAACCTTATCTCCCTGGTCACAATCTGTCATGATGTTCATATGTGGAAAAGGAAAGGAAGATTATCTATCAAGCAAAAATCTCATCCCGACCAAGTTGATCAGAAATACAAGACATGGAAAGCCAAAAATAATATGTTCATGTCATGGCTAATCAACTCCATGACGACAGAGATCAATGAAGGATTTTTATCCTTCTCAACTGCCAGCAAAATCTGGGAGGCCGCTTGTGAAACCTATTCCGATCAAGAAAACACTGCGGAATCATTTGAAATTGAAGGGAAAATTCATGAACTACGGCAAGGGGATATGCAAGTTACTCACTACTGCACTCAACTGTCTCGTCTTTAG

mRNA sequence

ATGCTGGCACAAAACCTTATCTCCCTGGTCACAATCTGTCATGATGTTCATATGTGGAAAAGGAAAGGAAGATTATCTATCAAGCAAAAATCTCATCCCGACCAAGTTGATCAGAAATACAAGACATGGAAAGCCAAAAATAATATGTTCATGTCATGGCTAATCAACTCCATGACGACAGAGATCAATGAAGGATTTTTATCCTTCTCAACTGCCAGCAAAATCTGGGAGGCCGCTTGTGAAACCTATTCCGATCAAGAAAACACTGCGGAATCATTTGAAATTGAAGGGAAAATTCATGAACTACGGCAAGGGGATATGCAAGTTACTCACTACTGCACTCAACTGTCTCGTCTTTAG

Coding sequence (CDS)

ATGCTGGCACAAAACCTTATCTCCCTGGTCACAATCTGTCATGATGTTCATATGTGGAAAAGGAAAGGAAGATTATCTATCAAGCAAAAATCTCATCCCGACCAAGTTGATCAGAAATACAAGACATGGAAAGCCAAAAATAATATGTTCATGTCATGGCTAATCAACTCCATGACGACAGAGATCAATGAAGGATTTTTATCCTTCTCAACTGCCAGCAAAATCTGGGAGGCCGCTTGTGAAACCTATTCCGATCAAGAAAACACTGCGGAATCATTTGAAATTGAAGGGAAAATTCATGAACTACGGCAAGGGGATATGCAAGTTACTCACTACTGCACTCAACTGTCTCGTCTTTAG

Protein sequence

MLAQNLISLVTICHDVHMWKRKGRLSIKQKSHPDQVDQKYKTWKAKNNMFMSWLINSMTTEINEGFLSFSTASKIWEAACETYSDQENTAESFEIEGKIHELRQGDMQVTHYCTQLSRL

Homology

[Close]

BLAST of Cla97C09G184485 vs. NCBI nr
Match: XP_024929479.1 (uncharacterized protein LOC112491646 [Ziziphus jujuba])

HSP 1 Score: 113.2 bits (282), Expect = 1.5e-21
Identity = 56/96 (58.33%), Postives = 71/96 (73.96%), Query Frame = 0


Query: 23  GRLSIKQKSHPDQVDQKYKTWKAKNNMFMSWLINSMTTEINEGFLSFSTASKIWEAACET 82
           G +SI +KS P     KY+TWK +N+M MSWLINSMTTE+ E FL + TA++IWEAA ET
Sbjct: 14  GEISIPEKSDP-----KYRTWKTENHMVMSWLINSMTTEVGENFLLYKTANEIWEAARET 73

Query: 83  YSDQENTAESFEIEGKIHELRQGDMQVTHYCTQLSR 119
           YS  ENT+E FEIE ++H+LRQ D+ VT Y   L+R
Sbjct: 74  YSSSENTSELFEIETRLHDLRQEDLNVTQYFNILTR 104

[Close]

BLAST of Cla97C09G184485 vs. NCBI nr
Match: XP_019076019.1 (PREDICTED: uncharacterized protein LOC109122762 [Vitis vinifera])

HSP 1 Score: 109.0 bits (271), Expect = 2.9e-20
Identity = 53/115 (46.09%), Postives = 70/115 (60.87%), Query Frame = 0


Query: 14  HDVHMWKR----------KGRLSIKQKSHPDQVDQKYKTWKAKNNMFMSWLINSMTTEIN 73
           HD H W +          K          P + D+++K W  +NN+ MSWLIN M TEI 
Sbjct: 39  HDYHQWAKAVLMFITGRGKDEYLFSTTEPPKKDDKRFKVWNTENNLVMSWLINVMDTEIG 98

Query: 74  EGFLSFSTASKIWEAACETYSDQENTAESFEIEGKIHELRQGDMQVTHYCTQLSR 119
           + FL + TA +IW AA ETYSD +NTA+ F+I+G +H+LRQG+M VTHY   LSR
Sbjct: 99  QNFLFYDTAHEIWMAAKETYSDSDNTADLFDIKGALHDLRQGEMTVTHYYNTLSR 153

[Close]

BLAST of Cla97C09G184485 vs. NCBI nr
Match: XP_039020537.1 (uncharacterized protein LOC120152380 [Hibiscus syriacus])

HSP 1 Score: 108.6 bits (270), Expect = 3.7e-20
Identity = 51/86 (59.30%), Postives = 62/86 (72.09%), Query Frame = 0


Query: 33  PDQVDQKYKTWKAKNNMFMSWLINSMTTEINEGFLSFSTASKIWEAACETYSDQENTAES 92
           P Q D+K+K W ++NNM MSWLINSMT EI E FL +  A KIWEAA ETYS+ ENT E 
Sbjct: 52  PSQDDEKFKIWNSENNMVMSWLINSMTNEIGENFLLYRIARKIWEAAKETYSNNENTPEL 111

Query: 93  FEIEGKIHELRQGDMQVTHYCTQLSR 119
           FE+E  +H+ RQGD+ VT Y   L+R
Sbjct: 112 FEVESVLHDFRQGDLTVTQYFNTLNR 137

[Close]

BLAST of Cla97C09G184485 vs. NCBI nr
Match: RVW85251.1 (Retrovirus-related Pol polyprotein from transposon RE2 [Vitis vinifera])

HSP 1 Score: 108.6 bits (270), Expect = 3.7e-20
Identity = 51/117 (43.59%), Postives = 73/117 (62.39%), Query Frame = 0


Query: 2   LAQNLISLVTICHDVHMWKRKGRLSIKQKSHPDQVDQKYKTWKAKNNMFMSWLINSMTTE 61
           +   +I++VTIC  VH+ K K      + + P+  +  ++ WK +N+M MSWLINSM  +
Sbjct: 380 IRNGIITMVTICVAVHLRKGKDEYLTGEAAMPETTEPGFRKWKIENSMIMSWLINSMNND 439

Query: 62  INEGFLSFSTASKIWEAACETYSDQENTAESFEIEGKIHELRQGDMQVTHYCTQLSR 119
           I E FL F TA  IW+AA ETYS  EN +E F++E  +H+ RQG+  VT Y   L+R
Sbjct: 440 IGENFLLFGTAKDIWDAAKETYSSSENISELFQVESALHDFRQGEQTVTQYYNTLTR 496

[Close]

BLAST of Cla97C09G184485 vs. NCBI nr
Match: RVW83277.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 108.2 bits (269), Expect = 4.9e-20
Identity = 52/115 (45.22%), Postives = 71/115 (61.74%), Query Frame = 0


Query: 14  HDVHMWKR----------KGRLSIKQKSHPDQVDQKYKTWKAKNNMFMSWLINSMTTEIN 73
           H+ H W +          K          P + D+++K W  +NN+ MSWLIN+M TEI 
Sbjct: 27  HNYHQWAKAILMFITGRGKDEYLFSTTEPPKKDDKRFKVWNTENNLVMSWLINAMDTEIG 86

Query: 74  EGFLSFSTASKIWEAACETYSDQENTAESFEIEGKIHELRQGDMQVTHYCTQLSR 119
           + FL + TA +IW AA ETYSD +NTA+ F+I+G +H+LRQG+M VTHY   LSR
Sbjct: 87  QNFLFYDTAHEIWMAAKETYSDSDNTADLFDIKGALHDLRQGEMTVTHYYNTLSR 141

[Close]

BLAST of Cla97C09G184485 vs. ExPASy TrEMBL
Match: A0A6P6G5K3 (uncharacterized protein LOC112491646 OS=Ziziphus jujuba OX=326968 GN=LOC112491646 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 7.3e-22
Identity = 56/96 (58.33%), Postives = 71/96 (73.96%), Query Frame = 0


Query: 23  GRLSIKQKSHPDQVDQKYKTWKAKNNMFMSWLINSMTTEINEGFLSFSTASKIWEAACET 82
           G +SI +KS P     KY+TWK +N+M MSWLINSMTTE+ E FL + TA++IWEAA ET
Sbjct: 14  GEISIPEKSDP-----KYRTWKTENHMVMSWLINSMTTEVGENFLLYKTANEIWEAARET 73

Query: 83  YSDQENTAESFEIEGKIHELRQGDMQVTHYCTQLSR 119
           YS  ENT+E FEIE ++H+LRQ D+ VT Y   L+R
Sbjct: 74  YSSSENTSELFEIETRLHDLRQEDLNVTQYFNILTR 104

[Close]

BLAST of Cla97C09G184485 vs. ExPASy TrEMBL
Match: A0A438HLC9 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Vitis vinifera OX=29760 GN=RE2_139 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.8e-20
Identity = 51/117 (43.59%), Postives = 73/117 (62.39%), Query Frame = 0


Query: 2   LAQNLISLVTICHDVHMWKRKGRLSIKQKSHPDQVDQKYKTWKAKNNMFMSWLINSMTTE 61
           +   +I++VTIC  VH+ K K      + + P+  +  ++ WK +N+M MSWLINSM  +
Sbjct: 380 IRNGIITMVTICVAVHLRKGKDEYLTGEAAMPETTEPGFRKWKIENSMIMSWLINSMNND 439

Query: 62  INEGFLSFSTASKIWEAACETYSDQENTAESFEIEGKIHELRQGDMQVTHYCTQLSR 119
           I E FL F TA  IW+AA ETYS  EN +E F++E  +H+ RQG+  VT Y   L+R
Sbjct: 440 IGENFLLFGTAKDIWDAAKETYSSSENISELFQVESALHDFRQGEQTVTQYYNTLTR 496

[Close]

BLAST of Cla97C09G184485 vs. ExPASy TrEMBL
Match: A0A438BTX7 (Gag-Pol-p199 OS=Vitis vinifera OX=29760 GN=TY3B-I_440 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.4e-20
Identity = 52/115 (45.22%), Postives = 71/115 (61.74%), Query Frame = 0


Query: 14   HDVHMWKR----------KGRLSIKQKSHPDQVDQKYKTWKAKNNMFMSWLINSMTTEIN 73
            H+ H W +          K          P + D+++K W  +NN+ MSWLIN+M TEI 
Sbjct: 1650 HNYHQWAKAVLMFITGRGKDEYLFSTTESPKKDDKRFKVWNIENNLVMSWLINAMDTEIG 1709

Query: 74   EGFLSFSTASKIWEAACETYSDQENTAESFEIEGKIHELRQGDMQVTHYCTQLSR 119
            + FL + TA +IW AA ETYSD +NTA+ F+I+G +H+LRQG+M VTHY   LSR
Sbjct: 1710 QNFLFYDTAHEIWMAAKETYSDSDNTADLFDIKGALHDLRQGEMTVTHYYNTLSR 1764

[Close]

BLAST of Cla97C09G184485 vs. ExPASy TrEMBL
Match: A0A438HJB5 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_2461 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.4e-20
Identity = 52/115 (45.22%), Postives = 71/115 (61.74%), Query Frame = 0


Query: 14  HDVHMWKR----------KGRLSIKQKSHPDQVDQKYKTWKAKNNMFMSWLINSMTTEIN 73
           H+ H W +          K          P + D+++K W  +NN+ MSWLIN+M TEI 
Sbjct: 75  HNYHQWAKAILMFITGRGKDEYLFSTTEPPKKDDKRFKVWNTENNLVMSWLINAMDTEIG 134

Query: 74  EGFLSFSTASKIWEAACETYSDQENTAESFEIEGKIHELRQGDMQVTHYCTQLSR 119
           + FL + TA +IW AA ETYSD +NTA+ F+I+G +H+LRQG+M VTHY   LSR
Sbjct: 135 QNFLFYDTAHEIWMAAKETYSDSDNTADLFDIKGALHDLRQGEMTVTHYYNTLSR 189

[Close]

BLAST of Cla97C09G184485 vs. ExPASy TrEMBL
Match: A0A438C841 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_117404 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.4e-20
Identity = 52/115 (45.22%), Postives = 71/115 (61.74%), Query Frame = 0


Query: 14  HDVHMWKR----------KGRLSIKQKSHPDQVDQKYKTWKAKNNMFMSWLINSMTTEIN 73
           H+ H W +          K          P + D+++K W  +NN+ MSWLIN+M TEI 
Sbjct: 39  HNYHQWAKAVLMFITGRGKDEYLFSTTEPPKKDDKRFKVWNTENNLVMSWLINAMDTEIG 98

Query: 74  EGFLSFSTASKIWEAACETYSDQENTAESFEIEGKIHELRQGDMQVTHYCTQLSR 119
           + FL + TA +IW AA ETYSD +NTA+ F+I+G +H+LRQG+M VTHY   LSR
Sbjct: 99  QNFLFYDTAHEIWMAAKETYSDSDNTADLFDIKGALHDLRQGEMTVTHYYNTLSR 153

The following BLAST results are available for this feature:

BLAST of Cla97C09G184485 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_024929479.1	1.5e-21	58.33	uncharacterized protein LOC112491646 [Ziziphus jujuba]	[more]
XP_019076019.1	2.9e-20	46.09	PREDICTED: uncharacterized protein LOC109122762 [Vitis vinifera]	[more]
XP_039020537.1	3.7e-20	59.30	uncharacterized protein LOC120152380 [Hibiscus syriacus]	[more]
RVW85251.1	3.7e-20	43.59	Retrovirus-related Pol polyprotein from transposon RE2 [Vitis vinifera]	[more]
RVW83277.1	4.9e-20	45.22	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]

BLAST of Cla97C09G184485 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cla97C09G184485 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6P6G5K3	7.3e-22	58.33	uncharacterized protein LOC112491646 OS=Ziziphus jujuba OX=326968 GN=LOC11249164...	[more]
A0A438HLC9	1.8e-20	43.59	Retrovirus-related Pol polyprotein from transposon RE2 OS=Vitis vinifera OX=2976...	[more]
A0A438BTX7	2.4e-20	45.22	Gag-Pol-p199 OS=Vitis vinifera OX=29760 GN=TY3B-I_440 PE=4 SV=1	[more]
A0A438HJB5	2.4e-20	45.22	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438C841	2.4e-20	45.22	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_117404 PE=4 SV=1	[more]

BLAST of Cla97C09G184485 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37610:SF47	SUBFAMILY NOT NAMED	coord: 32..118
None	No IPR available	PANTHER	PTHR37610	FAMILY NOT NAMED	coord: 32..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C09G184485.1	Cla97C09G184485.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0016787	hydrolase activity