Cla97C09G182180 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C09G182180
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	Ribosomal protein L10
Location	Cla97Chr09: 35528006 .. 35528206 (-)
RNA-Seq Expression	Cla97C09G182180
Synteny	Cla97C09G182180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATTCGGAAGAAGTCTTCTACGGAGGGAAAGCCTGTTACGAGTAAGTGGAGAGGAAATATCTCCAGAGATTCTTATCTCATTCTATTCCAGTGGCTTGACCAGTAACCAATGGCGAAAATTCAAAAATCTATGGTTTCCCGTAGAACCCCATTTCGCCCAAGTTGTTGCGAAACCGGCAGAAGCATACAATCTCTGA

mRNA sequence

ATGTCATTCGGAAGAAGTCTTCTACGGAGGGAAAGCCTGTTACGAGTAAGTGGAGAGGAAATATCTCCAGAGATTCTTATCTCATTCTATTCCAGTGGCTTGACCAGTAACCAATGGCGAAAATTCAAAAATCTATGGTTTCCCGTAGAACCCCATTTCGCCCAAGTTGTTGCGAAACCGGCAGAAGCATACAATCTCTGA

Coding sequence (CDS)

ATGTCATTCGGAAGAAGTCTTCTACGGAGGGAAAGCCTGTTACGAGTAAGTGGAGAGGAAATATCTCCAGAGATTCTTATCTCATTCTATTCCAGTGGCTTGACCAGTAACCAATGGCGAAAATTCAAAAATCTATGGTTTCCCGTAGAACCCCATTTCGCCCAAGTTGTTGCGAAACCGGCAGAAGCATACAATCTCTGA

Protein sequence

MSFGRSLLRRESLLRVSGEEISPEILISFYSSGLTSNQWRKFKNLWFPVEPHFAQVVAKPAEAYNL

Homology

[Close]

BLAST of Cla97C09G182180 vs. NCBI nr
Match: YP_009676243.1 (ribosomal protein L10 [Camellia sinensis] >QDE13162.1 ribosomal protein L10 [Camellia sinensis] >QDS78272.1 ribosomal protein L10 [Camellia sinensis var. assamica])

HSP 1 Score: 87.0 bits (214), Expect = 6.4e-14
Identity = 42/48 (87.50%), Postives = 44/48 (91.67%), Query Frame = 0


Query: 1  MSFGRSLLRRESLLRVSGEEISPEILISFYSSGLTSNQWRKFKNLWFP 49
          M FGRSLL+RESLLRVSGEE SPEILISF+SSG TSNQWRK KNLWFP
Sbjct: 1  MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNLWFP 48

[Close]

BLAST of Cla97C09G182180 vs. NCBI nr
Match: QEQ76371.1 (ribosomal protein L10 [Solanum tuberosum])

HSP 1 Score: 86.7 bits (213), Expect = 8.4e-14
Identity = 41/48 (85.42%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 1  MSFGRSLLRRESLLRVSGEEISPEILISFYSSGLTSNQWRKFKNLWFP 49
          M FGRSLL+++SLLRVSGEE SPEILISF+SSGLTSNQWRK KNLWFP
Sbjct: 1  MPFGRSLLQKKSLLRVSGEERSPEILISFHSSGLTSNQWRKLKNLWFP 48

[Close]

BLAST of Cla97C09G182180 vs. NCBI nr
Match: YP_008802497.1 (ribosomal protein subunit 10 [Asclepias syriaca] >AGZ63032.1 ribosomal protein subunit 10 [Asclepias syriaca])

HSP 1 Score: 86.7 bits (213), Expect = 8.4e-14
Identity = 41/48 (85.42%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 1  MSFGRSLLRRESLLRVSGEEISPEILISFYSSGLTSNQWRKFKNLWFP 49
          M FGRSLL+++SLLRVSGEE SPEILISF+SSGLTSNQWRK KNLWFP
Sbjct: 1  MPFGRSLLQKKSLLRVSGEERSPEILISFHSSGLTSNQWRKLKNLWFP 48

[Close]

BLAST of Cla97C09G182180 vs. NCBI nr
Match: KAG9157543.1 (hypothetical protein Leryth_022787 [Lithospermum erythrorhizon])

HSP 1 Score: 86.3 bits (212), Expect = 1.1e-13
Identity = 41/48 (85.42%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 1  MSFGRSLLRRESLLRVSGEEISPEILISFYSSGLTSNQWRKFKNLWFP 49
          MSFGRSLL+++SLLRVSGEE SPEILI F+SSGLTSNQWRK KNLWFP
Sbjct: 1  MSFGRSLLQKKSLLRVSGEERSPEILILFHSSGLTSNQWRKLKNLWFP 48

[Close]

BLAST of Cla97C09G182180 vs. NCBI nr
Match: QPK67171.1 (ribosomal protein subunit L10 [Francoa sonchifolia])

HSP 1 Score: 85.9 bits (211), Expect = 1.4e-13
Identity = 42/48 (87.50%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 1  MSFGRSLLRRESLLRVSGEEISPEILISFYSSGLTSNQWRKFKNLWFP 49
          M FGRSLLRRESLLRVSGEE SPEILISF+SSG TSNQWRK KN WFP
Sbjct: 1  MPFGRSLLRRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFP 48

[Close]

BLAST of Cla97C09G182180 vs. ExPASy TrEMBL
Match: A0A4Y5WYR1 (Ribosomal protein L10 OS=Camellia sinensis OX=4442 GN=rpl10 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.1e-14
Identity = 42/48 (87.50%), Postives = 44/48 (91.67%), Query Frame = 0


Query: 1  MSFGRSLLRRESLLRVSGEEISPEILISFYSSGLTSNQWRKFKNLWFP 49
          M FGRSLL+RESLLRVSGEE SPEILISF+SSG TSNQWRK KNLWFP
Sbjct: 1  MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNLWFP 48

[Close]

BLAST of Cla97C09G182180 vs. ExPASy TrEMBL
Match: A0A517LRK1 (Ribosomal protein L10 OS=Camellia sinensis var. assamica OX=261999 GN=rpl10 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.1e-14
Identity = 42/48 (87.50%), Postives = 44/48 (91.67%), Query Frame = 0


Query: 1  MSFGRSLLRRESLLRVSGEEISPEILISFYSSGLTSNQWRKFKNLWFP 49
          M FGRSLL+RESLLRVSGEE SPEILISF+SSG TSNQWRK KNLWFP
Sbjct: 1  MPFGRSLLQRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNLWFP 48

[Close]

BLAST of Cla97C09G182180 vs. ExPASy TrEMBL
Match: U5XNB1 (Ribosomal protein subunit 10 OS=Asclepias syriaca OX=48545 GN=rpl10 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.1e-14
Identity = 41/48 (85.42%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 1  MSFGRSLLRRESLLRVSGEEISPEILISFYSSGLTSNQWRKFKNLWFP 49
          M FGRSLL+++SLLRVSGEE SPEILISF+SSGLTSNQWRK KNLWFP
Sbjct: 1  MPFGRSLLQKKSLLRVSGEERSPEILISFHSSGLTSNQWRKLKNLWFP 48

[Close]

BLAST of Cla97C09G182180 vs. ExPASy TrEMBL
Match: A0A0V0GU84 (Putative ribosomal protein L10 (Mitochondrion)-like OS=Solanum chacoense OX=4108 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.1e-14
Identity = 41/48 (85.42%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 1  MSFGRSLLRRESLLRVSGEEISPEILISFYSSGLTSNQWRKFKNLWFP 49
          M FGRSLL+++SLLRVSGEE SPEILISF+SSGLTSNQWRK KNLWFP
Sbjct: 1  MPFGRSLLQKKSLLRVSGEERSPEILISFHSSGLTSNQWRKLKNLWFP 48

[Close]

BLAST of Cla97C09G182180 vs. ExPASy TrEMBL
Match: A0A7U3QFE7 (Ribosomal protein subunit L10 OS=Francoa sonchifolia OX=23250 GN=rpl10 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 7.0e-14
Identity = 42/48 (87.50%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 1  MSFGRSLLRRESLLRVSGEEISPEILISFYSSGLTSNQWRKFKNLWFP 49
          M FGRSLLRRESLLRVSGEE SPEILISF+SSG TSNQWRK KN WFP
Sbjct: 1  MPFGRSLLRRESLLRVSGEERSPEILISFHSSGSTSNQWRKLKNPWFP 48

The following BLAST results are available for this feature:

BLAST of Cla97C09G182180 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009676243.1	6.4e-14	87.50	ribosomal protein L10 [Camellia sinensis] >QDE13162.1 ribosomal protein L10 [Cam...	[more]
QEQ76371.1	8.4e-14	85.42	ribosomal protein L10 [Solanum tuberosum]	[more]
YP_008802497.1	8.4e-14	85.42	ribosomal protein subunit 10 [Asclepias syriaca] >AGZ63032.1 ribosomal protein s...	[more]
KAG9157543.1	1.1e-13	85.42	hypothetical protein Leryth_022787 [Lithospermum erythrorhizon]	[more]
QPK67171.1	1.4e-13	87.50	ribosomal protein subunit L10 [Francoa sonchifolia]	[more]

BLAST of Cla97C09G182180 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cla97C09G182180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4Y5WYR1	3.1e-14	87.50	Ribosomal protein L10 OS=Camellia sinensis OX=4442 GN=rpl10 PE=4 SV=1	[more]
A0A517LRK1	3.1e-14	87.50	Ribosomal protein L10 OS=Camellia sinensis var. assamica OX=261999 GN=rpl10 PE=4...	[more]
U5XNB1	4.1e-14	85.42	Ribosomal protein subunit 10 OS=Asclepias syriaca OX=48545 GN=rpl10 PE=4 SV=1	[more]
A0A0V0GU84	4.1e-14	85.42	Putative ribosomal protein L10 (Mitochondrion)-like OS=Solanum chacoense OX=4108...	[more]
A0A7U3QFE7	7.0e-14	87.50	Ribosomal protein subunit L10 OS=Francoa sonchifolia OX=23250 GN=rpl10 PE=4 SV=1	[more]

BLAST of Cla97C09G182180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C09G182180.1	Cla97C09G182180.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome