Cla97C09G181970 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C09G181970
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	Transcription initiation factor IIF subunit beta
Location	Cla97Chr09: 35296494 .. 35304649 (+)
RNA-Seq Expression	Cla97C09G181970
Synteny	Cla97C09G181970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGTCGACGGCAAATCCATCGACCGTTGCAGTTCCAGAAAACACCAAGGCAACAACAACATCGTTGTTGGAACCGACTTCTTAGAGACTAACAAGGCGGACAGAGCAATGTGGCTCTTAAAATGCCCGCAAGCTGTAACTCGCGCCCTTTCTAATTCCCCCGATGCCCCTTCCCGTCCGGTTGCTAAGGTCATCGTTTCTGTTGACCCGCTGCAATCGAATGACGATGATGATTCTTCCTCTACTGAGGTATATGATGACGTCTTGCTATGGTGTTTTTGGTTTTGGATTGAGGGTTCTCTTCTCACTGCATTGTGTGATTTCCTGTGTTTCTTACTTGCTTCTGCATGCTTTCCATTTTAGGTTACCTTGTTCTTTTATTTTTCGTTTGATATTGTCTTTATCTTAGGGCTTTGTGCTTGTTTCTGCGTATACATTTGCCGTTCTTTTTGTTTATAATTTGTTTCCTTTTGAGCTATTATTCATGGATTACTCGGACTACATTTTTTTATCTTTTTGTTCTTTTCTTGTTTCATTGGTAACGGAAAGTTTTGTTGTTTGTTAAAGTTTCAATGACGTGTGCTTAGTCTGAATTGGTTTTCCGCTATTGCGTTCTCGTGATGCTTTTCTATGAATAAGACCCTTCTGGTTTACATGCTTGGTTTCCTAACTGCCAACTGTATTTGGGTAGGATTGCAGTTTTCAGAATACGGAGGATCAGGAATTTTTGGAGATAGAAAAAACGAAGTAATTTAAGGGTAGTGTTTTTATTACTCTCCACTGACCAAAGGGTAGGTACATTTCCTAACTACCAGCTGTTGTTAGTGATCACTGTCAGTCCCCATTTTCTCGTGTTTAACCCCGCTCTGATTCTGTGACCAAATAGTCTGGTCCATGCTCTTAGTCTTGAATATTTCCTCACCATTTTTCCATATTTTCTTTTTTTTATTGGAGCTCTGGATGGTGCATAATTTGCATAGATGTTCATAGTGCTTGGGACTGACGAGGGAGGGTTTCAATGTTCCAAATTAAAAACTTCAAAGCCTCACAACCTCTACCTTCTGTCCTAAAGTCATTTGTTGAGAAATTAGTGATCCATTTCCATTATGTGAAATTCTATATAACTCAAGGGATTTTTTAATTTTTAAATATATATATATATATATTTTTTTTTGGTATGGATTTGATTCTTAATTCAACAACTAGGTTGGTGGGTTCTGCATCACAAGGTAAATTATCTGGTTTCTTTTAAAATGGAACTCACCGGGTGTTTAATCTGAGAGTAGGACTGTTCAGCTTTGTATAAGCTTATAAAATTGTAAAATATTCGAGGATAAGTTTGCTGAACCTGGACTTCGCGATTGAAGTTAACAATGGTTTGTCATTTTTAGCTGGAGAACTATCCGAATATTTTTTGCGACTGTATGGCTGTATATAATAAGCTAGCAGCCTGGAGATACTGACAGCATTTATACACTATATACCATCTTGGAGTAAAGTGATAACCACTTTGAGTCGATCTAGGATAAGGTCTGTTGGCTAAGTCAGTGGCTTTGGCATTTTGCCCTTGAGCCTGAATCTTTGTGGCATAGGATCATTGTGAGTAGGCATGACACCCGTCCCTTTGATTGAGTGGCTAAGGGGGTTAAAGATACACACTGAAATCTGTGGAAAGATATTTCGTTTGAGCTTCCCTCTTTTTCCCATTTGGTTTGTTGCATTGTGGGGGATGGTGAGGATAGGTAGTTTTGAGAAGATCAATTGGTGGGGAATAGTCTCAATCTGCTCTGTTTTTCCTCATCCTTATCATTTGTCTTCCTTTAAAAATCGCCCAGTCTTTGATTTTTTGGTTTGGTGGGGGAGCTCTATGTCCTTTTCTTTCAGGTTCCGCCACCATTTATCCAATAGAGAGACGGCGGAGGTTGACTCTTTTCTATCGTCGTTGGAAGAGTGTTTAGGGCGGGGAAGGGATGTTTCTGTTTGGAGCCCTAATCCTATTGGAGGCTTTTTCTCGCAAGTCCTTTGGTTGGTTGCTGTTGGACCCCTCTCCTATTAGTGAGTCGGTCTTTGATGTGGTTTAGAGGATTAAGATTCCAAAGAAAATCAAGTTCTTTACCTGGCAAGTTTTGCTAGGTCGAGTGAACACTTTGGATAGGCTTGCTGGGAATATGACCTCGTTAATATGTCCTTTTTGTTGTATTCTTTGTCAGAAGGTGAAGGATGACCTAGATCACCTTCTTTGGGGTTGTTAGTATGGGAGGTTTGTGTGGATTTGTTTCCTGCAGGAGCTTGATGTTTGGATAGCTGGCCAGAGGGATATTCATGCAATGATTAAGGAGTTCCTCCTCCATATGCCTTTAGAGAGAAAGGTTGTTTTTTGTAGTTTGTTGGGGTGTTTGCTGTGTTGTGGGATCTTTGGGGGGAGAGGAACAATAGAGTGTTCAGAAGTATGGACAGGGACCCGATTGAGGTTTGGTCCTTAGTGAGGTTTCATGTTTCACTTTGAGCTTCGGTAACAAAACTTTTTTGTAATTATTCCCTATGTAACATATTACTTAGTTGGAATCCCTTCCTTTAGAGGCGGGGTGCTTTTGTGGGCTTGTTTTTTTATGCCCTTATATTCTTTCATTTTTTCCTAATGAAAGTTGTTGATTCTATAGAAAAGAATGGACAATTTTATTTCAAATCTGCCTCTTTATGTTAAAATAAGTTCTACAGGTTTTCTTACGACCAAATTTAATAGGATTGTGTGATTGTCCAATAAAATTAGTTGATATGTTTGTAAGTTATTGCCTTGATAGTTGATGCTTACAGTATGAAGAAAAAACATCTTAAAGGAGTAACATCTTTAGATTGTGAAATAGTAATCTCCCCAAACTAAGTCACTGTTTAGAATTTCTTGCTCTCATCTGAAAGGAAACACATTGTAGTTGCCCTCTGGTTTAGTAGCACGTTAAATTAGATGCTCTGTGGAATAGTTGGTGACTTCTAAATGGTTTTAGCTAAAAATTACAAGACCTTTGGTTTGACCGCAGGCAAGGAGGCTTTGGAACTGTTTAGTAAGAAAATATATGTTTTTCATAATTTGACTGATGTAACCACAATATTATGATTCATTTCCAATTTGTAGTACTAGCTGTGTCATGTAATGATTTTCTTGCTTCTAAATTATTTTCAACTGCATTTAAAGCTCATTTCCAAGATAGTTCATAGTTATTTCTCCTTTTGTAGACTATTGAGTTCTTTGTCATGGAAGACGAGAACTTTATCCAAGAAGTGAGAACAAATCCATGTGTGCACAAAATTATTTTTCTAAATTTTGATTTCATAAAGAACAAGGTCTACCTGTATTAATGAAATTTGTTTTGTAAATTTCATTTGTAAATTCCATGCCCTTCTTTTGAAAATTTCATACATCAATGAAATTTGTTTCTTATCCAAAAAAAAAAAAAAAAAAAGGTCTACATGTATATGTGGTATGTGTCTGACAACAAACGAGTTTATACTTGAGTCTCTTGGCATGTGATCCTATTACAAGACTTTGGTCTTCAATTTTTTTTGCTAATTCAATTATATCATCTAAATCTTTTATTCCTCGTGGAACTTATAATGTTCTCATTAGTACAAGAGGTTGGGGATAGACTTCTCTGCTTACTCTCAGATGATGAATCATTTGGATAGAAAATGACAGATATTATGGCTCTCTTATCCTTGATTGGAGAGTTTTATATTAGCCTTGGGAGAAGGGTAATCGTCTTTGGGGTCATAGTCCTTTTGAAGGATTTTCTTGAAGCTCTTTTCTGCATGGTGAACCCTCTCCCTATGATTGTACTCTCTTTATCTTGTTGTGGAAGACGAAATTTTTCAAGAAGGTTAAGTTCATTATGTGGCAAGTCTTTCTCGGAAGAGTTAATACTTCAGATTGATTTGCGAGGAAGTTACCCTTCTTCATATGGTCTTAGTGTTGTATCCTATGTATGAGTGTGGTAGAGGATGTAGACCATCTTCTATGGAGCTGGAATTTTGCCATTCTGATTTAGAGTTGTTTTATTTAGGTGTTTAGTTTCTGTTTAGTATGATCTTAGAGTTGTAGCTTTATGATTGAGGAGTTCTTTCTTTATCTGTCATTTCATGGGAAGGGGTGTTTTTTGTGGCATGTTAGGGCTTGTGTGATTTTGTGGGGCTTTTAGGGTGAGAGAAATAATATAATCTTTAGTGTGCGGTAGGACTTCAATTGATGTTTGGTCTTTTGCTAGCTTCCGTGATTTTCTCTAGGCTTTAGTGATTACTCTTTGTAATTTAATAACATCCCAAGGGGCACGTCCAATACCTCGAATTACTTGGCTATCTTGTAAGTTGTCATCCTTTACCTTTTAATATAGTTTGATTGTGTTTTGGTTCCCATCATAATTATCTTTTTTTTTTTTTGCTTTTTTTGGATAAGAAACATTTCATTGATGAATGAAATTATCTAATGAGTACAACATGGAGAGACATAAAAAATTACAGATGAAGCCTAAACGAGAGAGAGCGATTACACCAAAATAAAAGAAGAGGATGTACAACCAAAAAAGAAAGATAAAAACAATAAAGCAGGGGGCTTCCATACAAAAGCGGCAAGGAAACTCAAAAGATAGCCAAATAAACAGATCCAAACAACTCCTTTAAAAAACAAACAATGTGAAGATAATTTAGCATAATCAAATTTATGGTCCTTCTCTGATCAATTCTTGCTTTTCTATCATATGATATGATATAGAGCTTTCAGGATTTCGAAGTTCCCTCATCCCTCTTTTTTCTTGGTAGATAATCTGTTGGGATGCTTATGAGTTGGGATTCCCTTTATGCATAGTTCAATTTCGCTAAACCATGGGCCAACACGATCAAATTATCTATCATAATTGTCCTGTAGTTTCATATTTTGCTTGATTGGAGTCCCTTTTTATAGATTGACTTCTTTTGCTTGGATTTTATTTTTGTATGTCCTTGCATTCTTTATCTATTCTCAATAAAAGCTTAGTTTTTCGTTATGAAAAATATTGTTCTATTATTAGTAGTTAGTTTGTGCCTAACATATTCTCACTTCCAAATGTTAAAAAAGTTATCAGTTATTACCAAGTTGGGCCTAAATTTTTTTCAAGCATGGCTTCTTACATCGGTTATTATTTATATTAAAGGAGAAACATGAGAATAATCATATCAGCATCCATTTTTTGCCTTTTTCAGCTAACAATGACTCAATGGTTTCAGTTTACTATGGAATTGGCTGGCACTGACTCTGGAAATGCATTAAGGTCCTACTCCTTGAATATGTCCACAGACTTCATTCCAATGTCTGTATTTTCCGAGTCATCACAAGGTTGGTTTATGTCACTCTAGCCTGCTTATTGAAAAATGACCCATAAATATGATGTTTCAAATATTTGCTTGTAAGCTGGATGAACTATTACTCTGAATAACTACTTCTATTGACTTAGAGCATATGTGCATTAATAATGAATTTCAGAATTTGTCTGATTCAATATTAATTTTATAGTTGTAATGTCATGAGTTTGATGATTAATAACACTCAGGGCTGTTTGGGTCCCCAACTTGAAGTTGGTGGGGTGTGCTATTATAGCCCACTCCATGTTTGGGGCTCAAAATATTATTGTAGTGTTTATAATTATTTATAATCTACAATTAACTACAGTAATACTATTTAAAATCCCTCTTTGTTATGCTGTTTATTATTACCTACCCATCCTCTCTCCCTTTTAGTACAATGTTTATTATTTTCTACTTAGACTAAAATAGTCGGCACCCCAAACATAGACTATAAGAACTCAGACTAAAGTAGTTTACACCCTAAACACATATTATTGTAGTCCATATACTATAATAATAAGTAACCAACTCATTGCTCCAAACTTCCCCTCAATTTGCTGCAGGGGTTTGGATATCTTAATGCACTTCTTGCTGGATATTTATATAGTGTGTTTATTGTTTATTGTTTTATAGAAAAAAAGAAAAAGAAAATTTTGTAACGTGGGAGTTAGTATGAGAGACTGTGTGCAGTTGAACCCGACTCCAACAAGTCGTTAGGCTTATGCTGTAACATTGCCTTCCAAGTTCCATCCCTTTTCGTGTTCTTCCTTTTATCAATCCTCTTTAATTCCTTTTCTGTTCAACGTCTGATGTGTCAAGACTCAGTCAGGACTACTGATCGCGTACTGATGAATAATATAAATATGTCTGATGAAAACTAAAACATCTTTGCAGCAGCTGGAGATGGGGTAATTGATCTCCATGCACATAGCCACTTACTGATAAAATTCTGCCGAAACATTACGTATTTGCATATTAACAAGAGTTCTTAATCATTTGCTGTCCTGACACATGTATAAGTAATTTCCATCATTTTGCGCTGAGGTTCTCTAATGTTAGTAGAGGAAATTTCCATTGATATAGTACAGAGATCTCCTATTCAAATACCAGCATGAGCTTTCATCTTGTAATTTTCTATAGCAGCTATAACTTCCATTTTTCATTTGAAGTTTTATAATTATTTACAGGATAAACATATATAACTGATAAGCTCTGTGGGTGTACTGAAAATACTTCAAATTCTTCTTAAATTTTAGGGAAGTTTACGGTCGAAGGGAAAATACTGAACAAATTTGACATGAAGCCACATGATCAGAATCTTGAGAGGTACGGGAAACTCTGTCGTGAAAGAACTCACAAGTCTATGACCAAAAGCAGACAGATTCAGGTCTCCTTTGTAACTTCTTATGCAGCGTAGTTGGGTGTTTGGTTACTTTATTTATTGCTCCCATGATCTTCTGGTTAAAATTCCCAAATATTCCATATAGGTGATTGATCATGTCACAGGAGGACATATGAGGCCTATGCCAGGGATGGACGTGTTGTCATTTGGAGCTGCAGTAATTATCCTACATTCATTTCTACTTTGTTTGATATCATTATCAAATTAAAAATTTGATTTTGCCTGTGCTATAATTAAATACCCTCGTCGTCAATCAGAAGTTTGTCCAAATGCTTCCAAGAATTACTTTTTACTATTGTGAACATGTGTGATACTAATTTTGGTTCAGGAGAAGAAGAAAGTGGTGACCAAGGGATCGGAAACAAAGAGGTTGAGAAAGGAGCGTGGTGAATTGGAGAAGATCATTTTTAGGCTTTTTGAAAGACAGGCATATTGGACATCAAAACAATTGATTCAAGAGACTGACCAACCTGAAGTAAGATTTATCATTTTTTTTTTTTTTATTATTATTATTATTTTTTTGGTTTAAGAAACAAAGGAAGTGCATTGAATGATCACAAAAGGAATACACCCTAGAGTCGGAAGGGTGTAAAACCCACTCCCCTAGATTTAACATTAAGCTAGGCTATAATTGCATAAAAATGTCTTGCGTATTTAGACACCATAAGGAAGAGTTCGATTGTACACTTATCGAATACTAAGCTTGCATGTATAGTTTATCATCTGGTTTTTTCCGTTTATATATAATTGAAACCACATTAGTAAATGCAAATATAGTTACATGAAATTGTGGTTTTATGCCGATTAGCTTTTTGCGACTAGAGTCTTACAGTTGTGATCAACTTGAACATAATTCTGGAATATAAAGATGAATTGTACTTTATATCCACTCCCCTAACTTTCATTTAGAAAAAGGTCACACATCTCTCTTAAACATCTGCATCCATAGGAAAGATGCAAATGAACTGCTCGCTTGAAACACTACAGTTCTAGTTGATAGCTTGATTCTGCTTCTTGTTAGGCTACCACTTGCATTGATTGAAGGCTGAAACATCCAATCTTTCTTTTTTGCAGCAATATATGAAGGAAATACTTAAAGACCTTTGTGTCTACAACAACAAAGGCGCTCACCAAGGAACATATGAGCTGAAGCCAGAATACAAGGAATCAGGTGAGGAAACGAAACCGTGGTAGGTGAGGTATGTTCCAAGAACTGGGAAATGACTTTGGTTTTGGTATTTGACTAAACATTTAGTGGAAAATTTGTGTGTGGATGGGAGGAGGCTGCTCTTTTCTTCAGTTTTTTAAGTCTAGGCTTAGGATTTCCCCATTCTCGACTCTTCAGTAACCACTGAAATTTTGTAGAAATGCGAACCCATCACGA

mRNA sequence

ATGGACGTCGACGGCAAATCCATCGACCGTTGCAGTTCCAGAAAACACCAAGGCAACAACAACATCGTTGTTGGAACCGACTTCTTAGAGACTAACAAGGCGGACAGAGCAATGTGGCTCTTAAAATGCCCGCAAGCTGTAACTCGCGCCCTTTCTAATTCCCCCGATGCCCCTTCCCGTCCGGTTGCTAAGGTCATCGTTTCTGTTGACCCGCTGCAATCGAATGACGATGATGATTCTTCCTCTACTGAGCTAACAATGACTCAATGGTTTCAGTTTACTATGGAATTGGCTGGCACTGACTCTGGAAATGCATTAAGGTCCTACTCCTTGAATATGTCCACAGACTTCATTCCAATGTCTGTATTTTCCGAGTCATCACAAGGGAAGTTTACGGTCGAAGGGAAAATACTGAACAAATTTGACATGAAGCCACATGATCAGAATCTTGAGAGGTACGGGAAACTCTGTCGTGAAAGAACTCACAAGTCTATGACCAAAAGCAGACAGATTCAGGTGATTGATCATGTCACAGGAGGACATATGAGGCCTATGCCAGGGATGGACGTGTTGTCATTTGGAGCTGCAGAGAAGAAGAAAGTGGTGACCAAGGGATCGGAAACAAAGAGGTTGAGAAAGGAGCGTGGTGAATTGGAGAAGATCATTTTTAGGCTTTTTGAAAGACAGGCATATTGGACATCAAAACAATTGATTCAAGAGACTGACCAACCTGAACAATATATGAAGGAAATACTTAAAGACCTTTGTGTCTACAACAACAAAGGCGCTCACCAAGGAACATATGAGCTGAAGCCAGAATACAAGGAATCAGGTGAGGAAACGAAACCGTGGTAGGTGAGGTATGTTCCAAGAACTGGGAAATGACTTTGGTTTTGGTATTTGACTAAACATTTAGTGGAAAATTTGTGTGTGGATGGGAGGAGGCTGCTCTTTTCTTCAGTTTTTTAAGTCTAGGCTTAGGATTTCCCCATTCTCGACTCTTCAGTAACCACTGAAATTTTGTAGAAATGCGAACCCATCACGA

Coding sequence (CDS)

ATGGACGTCGACGGCAAATCCATCGACCGTTGCAGTTCCAGAAAACACCAAGGCAACAACAACATCGTTGTTGGAACCGACTTCTTAGAGACTAACAAGGCGGACAGAGCAATGTGGCTCTTAAAATGCCCGCAAGCTGTAACTCGCGCCCTTTCTAATTCCCCCGATGCCCCTTCCCGTCCGGTTGCTAAGGTCATCGTTTCTGTTGACCCGCTGCAATCGAATGACGATGATGATTCTTCCTCTACTGAGCTAACAATGACTCAATGGTTTCAGTTTACTATGGAATTGGCTGGCACTGACTCTGGAAATGCATTAAGGTCCTACTCCTTGAATATGTCCACAGACTTCATTCCAATGTCTGTATTTTCCGAGTCATCACAAGGGAAGTTTACGGTCGAAGGGAAAATACTGAACAAATTTGACATGAAGCCACATGATCAGAATCTTGAGAGGTACGGGAAACTCTGTCGTGAAAGAACTCACAAGTCTATGACCAAAAGCAGACAGATTCAGGTGATTGATCATGTCACAGGAGGACATATGAGGCCTATGCCAGGGATGGACGTGTTGTCATTTGGAGCTGCAGAGAAGAAGAAAGTGGTGACCAAGGGATCGGAAACAAAGAGGTTGAGAAAGGAGCGTGGTGAATTGGAGAAGATCATTTTTAGGCTTTTTGAAAGACAGGCATATTGGACATCAAAACAATTGATTCAAGAGACTGACCAACCTGAACAATATATGAAGGAAATACTTAAAGACCTTTGTGTCTACAACAACAAAGGCGCTCACCAAGGAACATATGAGCTGAAGCCAGAATACAAGGAATCAGGTGAGGAAACGAAACCGTGGTAG

Protein sequence

MDVDGKSIDRCSSRKHQGNNNIVVGTDFLETNKADRAMWLLKCPQAVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTELTMTQWFQFTMELAGTDSGNALRSYSLNMSTDFIPMSVFSESSQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVTKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGAHQGTYELKPEYKESGEETKPW

Homology

[Close]

BLAST of Cla97C09G181970 vs. NCBI nr
Match: XP_038889594.1 (general transcription factor IIF subunit 2-like [Benincasa hispida] >XP_038889595.1 general transcription factor IIF subunit 2-like [Benincasa hispida] >XP_038889596.1 general transcription factor IIF subunit 2-like [Benincasa hispida])

HSP 1 Score: 520.0 bits (1338), Expect = 1.3e-143
Identity = 265/283 (93.64%), Postives = 267/283 (94.35%), Query Frame = 0


Query: 1   MDVDGKSIDRCSSRKHQGNNNIVVGTDFLETNKADRAMWLLKCPQAVTRALSNSPDAPSR 60
           MDVDGKSIDRCSSRK Q NNN VVGTDFLETNKADRAMWLLKCPQ VTRALSNSPD PSR
Sbjct: 1   MDVDGKSIDRCSSRKLQINNNSVVGTDFLETNKADRAMWLLKCPQVVTRALSNSPDGPSR 60

Query: 61  PVAKVIVSVDPLQSNDDDDSSSTELTMTQWFQFTMELAGTDSGNALRSYSLNMSTDFIPM 120
           PVAKVIVSVDPLQSNDDDDSSSTE        FTMELAGTDSGN LRSYSLNMSTDFIPM
Sbjct: 61  PVAKVIVSVDPLQSNDDDDSSSTE--------FTMELAGTDSGNTLRSYSLNMSTDFIPM 120

Query: 121 SVFSESSQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGG 180
           SVFSESSQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGG
Sbjct: 121 SVFSESSQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGG 180

Query: 181 HMRPMPGMDVLSFGAAEKKKVVTKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQE 240
           HMRPMPGMDVLSFGAAEKKKVV+KGSETKRLRKERGELEKIIFRLFERQ+YWTSKQLIQE
Sbjct: 181 HMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQSYWTSKQLIQE 240

Query: 241 TDQPEQYMKEILKDLCVYNNKGAHQGTYELKPEYKESGEETKP 284
           TDQPEQYMKEILKDLCVYNNKG HQGTYELKPEYKESGEE KP
Sbjct: 241 TDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGEEAKP 275

[Close]

BLAST of Cla97C09G181970 vs. NCBI nr
Match: XP_008465665.1 (PREDICTED: general transcription factor IIF subunit 2 isoform X2 [Cucumis melo])

HSP 1 Score: 515.8 bits (1327), Expect = 2.4e-142
Identity = 264/284 (92.96%), Postives = 268/284 (94.37%), Query Frame = 0


Query: 1   MDVDGKSIDRCSSRKHQ-GNNNIVVGTDFLETNKADRAMWLLKCPQAVTRALSNSPDAPS 60
           MDVDGKSIDR +SRKHQ  NNNIVVGTDFLETNKADRAMWLLKCPQ VTRALSNSPDAPS
Sbjct: 1   MDVDGKSIDRSTSRKHQTNNNNIVVGTDFLETNKADRAMWLLKCPQVVTRALSNSPDAPS 60

Query: 61  RPVAKVIVSVDPLQSNDDDDSSSTELTMTQWFQFTMELAGTDSGNALRSYSLNMSTDFIP 120
           RPVAKVIVSVDPLQSNDDDDSSSTE        FTMELA TDSGNALRSY+LNMSTDFIP
Sbjct: 61  RPVAKVIVSVDPLQSNDDDDSSSTE--------FTMELASTDSGNALRSYTLNMSTDFIP 120

Query: 121 MSVFSESSQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTG 180
           MSVFSESSQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTG
Sbjct: 121 MSVFSESSQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTG 180

Query: 181 GHMRPMPGMDVLSFGAAEKKKVVTKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQ 240
           GHMRPMPGMDVLSFGAAEKKKVV+KGSETKRLRKERGELEKIIF+LFERQ YWTSKQLIQ
Sbjct: 181 GHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFKLFERQPYWTSKQLIQ 240

Query: 241 ETDQPEQYMKEILKDLCVYNNKGAHQGTYELKPEYKESGEETKP 284
           ETDQPEQYMKEILKDLCVYNNKG HQGTYELKPEYKES EETKP
Sbjct: 241 ETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESSEETKP 276

[Close]

BLAST of Cla97C09G181970 vs. NCBI nr
Match: XP_004143805.1 (general transcription factor IIF subunit 2 isoform X3 [Cucumis sativus] >KGN51637.2 hypothetical protein Csa_008814 [Cucumis sativus])

HSP 1 Score: 513.1 bits (1320), Expect = 1.6e-141
Identity = 262/284 (92.25%), Postives = 268/284 (94.37%), Query Frame = 0


Query: 1   MDVDGKSIDRCSSRKHQGNNN-IVVGTDFLETNKADRAMWLLKCPQAVTRALSNSPDAPS 60
           MDVDGKSIDR +SRKHQ NNN IVVGTDFLETNKADRAMWLLKCPQ VTRALSNSPDAPS
Sbjct: 1   MDVDGKSIDRSTSRKHQTNNNSIVVGTDFLETNKADRAMWLLKCPQLVTRALSNSPDAPS 60

Query: 61  RPVAKVIVSVDPLQSNDDDDSSSTELTMTQWFQFTMELAGTDSGNALRSYSLNMSTDFIP 120
           RPVAKVIVSVDPLQSNDDDDSSSTE        FTMELA TDSGNALRSYSLNMSTDFIP
Sbjct: 61  RPVAKVIVSVDPLQSNDDDDSSSTE--------FTMELASTDSGNALRSYSLNMSTDFIP 120

Query: 121 MSVFSESSQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTG 180
           MSVFSESSQGKFT+EGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTG
Sbjct: 121 MSVFSESSQGKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTG 180

Query: 181 GHMRPMPGMDVLSFGAAEKKKVVTKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQ 240
           GHMRPMPGMDVLSFGAAEKKKVV+KGSETKRLRKERGELEKIIF+LFERQ YWTSKQLIQ
Sbjct: 181 GHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFKLFERQPYWTSKQLIQ 240

Query: 241 ETDQPEQYMKEILKDLCVYNNKGAHQGTYELKPEYKESGEETKP 284
           ETDQPEQYMKEILKDLCVYNNKG HQGTYELKPEY+ES E+TKP
Sbjct: 241 ETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYRESSEDTKP 276

[Close]

BLAST of Cla97C09G181970 vs. NCBI nr
Match: XP_008465664.1 (PREDICTED: general transcription factor IIF subunit 2 isoform X1 [Cucumis melo])

HSP 1 Score: 509.2 bits (1310), Expect = 2.3e-140
Identity = 264/290 (91.03%), Postives = 268/290 (92.41%), Query Frame = 0


Query: 1   MDVDGKSIDRCSSRKHQ-GNNNIVVGTDFLETNKADRAMWLLKCPQAVTRALSNSPDAPS 60
           MDVDGKSIDR +SRKHQ  NNNIVVGTDFLETNKADRAMWLLKCPQ VTRALSNSPDAPS
Sbjct: 1   MDVDGKSIDRSTSRKHQTNNNNIVVGTDFLETNKADRAMWLLKCPQVVTRALSNSPDAPS 60

Query: 61  RPVAKVIVSVDPLQSNDDDDSSSTELTMTQWFQFTMELAGTDSGNALRSYSLNMSTDFIP 120
           RPVAKVIVSVDPLQSNDDDDSSSTE        FTMELA TDSGNALRSY+LNMSTDFIP
Sbjct: 61  RPVAKVIVSVDPLQSNDDDDSSSTE--------FTMELASTDSGNALRSYTLNMSTDFIP 120

Query: 121 MSVFSESSQ------GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQV 180
           MSVFSESSQ      GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQV
Sbjct: 121 MSVFSESSQDSSFVLGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQV 180

Query: 181 IDHVTGGHMRPMPGMDVLSFGAAEKKKVVTKGSETKRLRKERGELEKIIFRLFERQAYWT 240
           IDHVTGGHMRPMPGMDVLSFGAAEKKKVV+KGSETKRLRKERGELEKIIF+LFERQ YWT
Sbjct: 181 IDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFKLFERQPYWT 240

Query: 241 SKQLIQETDQPEQYMKEILKDLCVYNNKGAHQGTYELKPEYKESGEETKP 284
           SKQLIQETDQPEQYMKEILKDLCVYNNKG HQGTYELKPEYKES EETKP
Sbjct: 241 SKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESSEETKP 282

[Close]

BLAST of Cla97C09G181970 vs. NCBI nr
Match: XP_022133483.1 (general transcription factor IIF subunit 2-like [Momordica charantia])

HSP 1 Score: 502.7 bits (1293), Expect = 2.1e-138
Identity = 259/284 (91.20%), Postives = 262/284 (92.25%), Query Frame = 0


Query: 1   MDVDGKSIDRCSSRKHQGNNNIV--VGTDFLETNKADRAMWLLKCPQAVTRALSNSPDAP 60
           MDVD K IDRCSSRK Q NNN V   GTDFLETNKADRAMWLLKCPQAVTRALSNSPD P
Sbjct: 1   MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGP 60

Query: 61  SRPVAKVIVSVDPLQSNDDDDSSSTELTMTQWFQFTMELAGTDSGNALRSYSLNMSTDFI 120
           SRPVAKVIVSVDPLQSNDDDDSSSTE        FTMELAGTDSGN+LRSYSLNMSTDFI
Sbjct: 61  SRPVAKVIVSVDPLQSNDDDDSSSTE--------FTMELAGTDSGNSLRSYSLNMSTDFI 120

Query: 121 PMSVFSESSQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVT 180
           PMSVFSES  GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVT
Sbjct: 121 PMSVFSESPPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVT 180

Query: 181 GGHMRPMPGMDVLSFGAAEKKKVVTKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLI 240
           GGHMRPMPGMDV SFGAAEKKKVV+KGSETKRLRKERGELEKIIFRLFERQ YWTSKQLI
Sbjct: 181 GGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQPYWTSKQLI 240

Query: 241 QETDQPEQYMKEILKDLCVYNNKGAHQGTYELKPEYKESGEETK 283
           QETDQPEQYMKEILKDLCVYNNKG HQGTYELKPEYKESG+ETK
Sbjct: 241 QETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETK 276

[Close]

BLAST of Cla97C09G181970 vs. ExPASy Swiss-Prot
Match: P41900 (General transcription factor IIF subunit 2 OS=Drosophila melanogaster OX=7227 GN=TfIIFbeta PE=2 SV=2)

HSP 1 Score: 83.6 bits (205), Expect = 4.0e-15
Identity = 71/264 (26.89%), Postives = 120/264 (45.45%), Query Frame = 0


Query: 29  LETNKADRAMWLLKCPQAVTRALSNSP----------DAPSRPVAKVIVSVDPLQSNDDD 88
           L+ + A R +WL+K P+ + +    +P          +      A+V +S+ P     D 
Sbjct: 16  LDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVLALDP 75

Query: 89  DSSSTELTMTQWFQFTMELAGTDSGNALRSYSLNMSTDFIPMSVFSESSQGKFTVEGKIL 148
           +       +    Q T +  G  S  A      N +T        ++    K  +EG+I+
Sbjct: 76  EEKIPTEHILDVSQVTKQTLGVFSHMAPSDGKENSTTS------AAQPDNEKLYMEGRIV 135

Query: 149 NKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEK 208
            K + +P   N   Y KL  E   K+    R++Q ID +   + +P+      +    E+
Sbjct: 136 QKLECRPIADNC--YMKLKLESIRKASEPQRRVQPIDKIV-QNFKPVKD-HAHNIEYRER 195

Query: 209 KKVVTKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVY 268
           KK     +E K+ R ++  +  ++F  FE+  Y+  K L++ T+QP  Y+KEILKD+C Y
Sbjct: 196 KK-----AEGKKARDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILKDVCDY 255

Query: 269 NNKGAHQGTYELKPEYKESGEETK 283
           N K  H+  +ELK EY+    E K
Sbjct: 256 NMKNPHKNMWELKKEYRHYKTEEK 264

[Close]

BLAST of Cla97C09G181970 vs. ExPASy Swiss-Prot
Match: Q8R0A0 (General transcription factor IIF subunit 2 OS=Mus musculus OX=10090 GN=Gtf2f2 PE=1 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.2e-14
Identity = 53/163 (32.52%), Postives = 88/163 (53.99%), Query Frame = 0


Query: 120 MSVFSESSQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTG 179
           ++VF+ESS  K ++EG ++ + + +P     E Y KL R +  +S    R  Q +D V  
Sbjct: 93  LTVFTESSSDKLSLEGIVVQRAECRPAAS--ENYMKLKRLQIEESSKPVRLSQQLDKVVT 152

Query: 180 GHMRPMPGMDVLSFGAAEKKKVVTKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQ 239
            + +P+       +    ++K   K  + KR R ++  +  ++F  FE+  Y+  K L+ 
Sbjct: 153 TNYKPVANH---QYNIEYERK---KKEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVD 212

Query: 240 ETDQPEQYMKEILKDLCVYNNKGAHQGTYELKPEYKESGEETK 283
            T QP  Y+KEILK++ + N KG H+ T+ELKPEY+    E K
Sbjct: 213 ITKQPVGYLKEILKEIGIQNVKGIHKNTWELKPEYRHYQTEEK 247

[Close]

BLAST of Cla97C09G181970 vs. ExPASy Swiss-Prot
Match: P13984 (General transcription factor IIF subunit 2 OS=Homo sapiens OX=9606 GN=GTF2F2 PE=1 SV=2)

HSP 1 Score: 81.3 bits (199), Expect = 2.0e-14
Identity = 54/162 (33.33%), Postives = 89/162 (54.94%), Query Frame = 0


Query: 120 MSVFSESSQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTG 179
           ++VF+ESS  K ++EG ++ + + +P     E Y +L R +  +S    R  Q +D V  
Sbjct: 93  LTVFTESSSDKLSLEGIVVQRAECRPAAS--ENYMRLKRLQIEESSKPVRLSQQLDKVVT 152

Query: 180 GHMRPMPGMDVLSFGAAEKKKVVTKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQ 239
            + +P+       +    ++K   K  + KR R ++  +  ++F  FE+  Y+  K L+ 
Sbjct: 153 TNYKPVANH---QYNIEYERK---KKEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVD 212

Query: 240 ETDQPEQYMKEILKDLCVYNNKGAHQGTYELKPEYKE-SGEE 281
            T QP  Y+KEILK++ V N KG H+ T+ELKPEY+   GEE
Sbjct: 213 ITKQPVVYLKEILKEIGVQNVKGIHKNTWELKPEYRHYQGEE 246

[Close]

BLAST of Cla97C09G181970 vs. ExPASy Swiss-Prot
Match: Q01750 (General transcription factor IIF subunit 2 OS=Rattus norvegicus OX=10116 GN=Gtf2f2 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.0e-14
Identity = 71/258 (27.52%), Postives = 122/258 (47.29%), Query Frame = 0


Query: 33  KADRAMWLLKCPQAVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTELTMTQWFQ 92
           K +  +WL+K P+ +++  + +P      V K+ ++          +   TE++    F 
Sbjct: 13  KQNTGVWLVKVPKYLSQQWAKAPGRGE--VGKLRIA---------KNQGRTEVS----FT 72

Query: 93  FTMELAGT-DSGNALRSYSLNMSTDFI-------PMSVFSESSQGKFTVEGKILNKFDMK 152
              +LA   D G    S S      F+        ++VF+ESS  K ++EG ++ + + +
Sbjct: 73  LNEDLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECR 132

Query: 153 PHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVTK 212
           P     E Y KL R +  +S    R  Q  D V   + +P+       +    ++K   K
Sbjct: 133 PAAS--ENYMKLKRLQIEESSKPVRLSQQADKVVTTNYKPVANH---QYNIEYERK---K 192

Query: 213 GSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGAH 272
             + KR R ++  +  ++F  FE+  Y+  K L+  T QP  Y+KEILK++ + N KG H
Sbjct: 193 KEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVKGIH 247

Query: 273 QGTYELKPEYKESGEETK 283
           + T+ELKPEY+    E K
Sbjct: 253 KNTWELKPEYRHYQTEEK 247

[Close]

BLAST of Cla97C09G181970 vs. ExPASy Swiss-Prot
Match: Q2T9L9 (General transcription factor IIF subunit 2 OS=Bos taurus OX=9913 GN=GTF2F2 PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.6e-14
Identity = 70/258 (27.13%), Postives = 123/258 (47.67%), Query Frame = 0


Query: 33  KADRAMWLLKCPQAVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTELTMTQWFQ 92
           K +  +WL+K P+ +++  + +P      V K+ ++          +   TE++    F 
Sbjct: 13  KQNTGVWLVKVPKYLSQQWAKAPGRGE--VGKLRIA---------KNQGRTEVS----FT 72

Query: 93  FTMELAGT-DSGNALRSYSLNMSTDFI-------PMSVFSESSQGKFTVEGKILNKFDMK 152
              +LA   D G    S S      F+        ++VF+ESS  K ++EG ++ + + +
Sbjct: 73  LNEDLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECR 132

Query: 153 PHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVTK 212
           P     E Y +L R +  +S    R  Q +D V   + +P+       +    ++K   K
Sbjct: 133 PAAN--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANH---QYNIEYERK---K 192

Query: 213 GSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGAH 272
             + KR R ++  +  ++F  FE+  Y+  K L+  T QP  Y+K+ILK++ V N KG H
Sbjct: 193 KEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVSYLKDILKEIGVQNVKGIH 247

Query: 273 QGTYELKPEYKESGEETK 283
           + T+ELKPEY+    E K
Sbjct: 253 KNTWELKPEYRHYQVEEK 247

[Close]

BLAST of Cla97C09G181970 vs. ExPASy TrEMBL
Match: A0A1S3CPB8 (Transcription initiation factor IIF subunit beta OS=Cucumis melo OX=3656 GN=LOC103503304 PE=3 SV=1)

HSP 1 Score: 515.8 bits (1327), Expect = 1.2e-142
Identity = 264/284 (92.96%), Postives = 268/284 (94.37%), Query Frame = 0


Query: 1   MDVDGKSIDRCSSRKHQ-GNNNIVVGTDFLETNKADRAMWLLKCPQAVTRALSNSPDAPS 60
           MDVDGKSIDR +SRKHQ  NNNIVVGTDFLETNKADRAMWLLKCPQ VTRALSNSPDAPS
Sbjct: 1   MDVDGKSIDRSTSRKHQTNNNNIVVGTDFLETNKADRAMWLLKCPQVVTRALSNSPDAPS 60

Query: 61  RPVAKVIVSVDPLQSNDDDDSSSTELTMTQWFQFTMELAGTDSGNALRSYSLNMSTDFIP 120
           RPVAKVIVSVDPLQSNDDDDSSSTE        FTMELA TDSGNALRSY+LNMSTDFIP
Sbjct: 61  RPVAKVIVSVDPLQSNDDDDSSSTE--------FTMELASTDSGNALRSYTLNMSTDFIP 120

Query: 121 MSVFSESSQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTG 180
           MSVFSESSQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTG
Sbjct: 121 MSVFSESSQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTG 180

Query: 181 GHMRPMPGMDVLSFGAAEKKKVVTKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQ 240
           GHMRPMPGMDVLSFGAAEKKKVV+KGSETKRLRKERGELEKIIF+LFERQ YWTSKQLIQ
Sbjct: 181 GHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFKLFERQPYWTSKQLIQ 240

Query: 241 ETDQPEQYMKEILKDLCVYNNKGAHQGTYELKPEYKESGEETKP 284
           ETDQPEQYMKEILKDLCVYNNKG HQGTYELKPEYKES EETKP
Sbjct: 241 ETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESSEETKP 276

[Close]

BLAST of Cla97C09G181970 vs. ExPASy TrEMBL
Match: A0A1S3CPE2 (Transcription initiation factor IIF subunit beta OS=Cucumis melo OX=3656 GN=LOC103503304 PE=3 SV=1)

HSP 1 Score: 509.2 bits (1310), Expect = 1.1e-140
Identity = 264/290 (91.03%), Postives = 268/290 (92.41%), Query Frame = 0


Query: 1   MDVDGKSIDRCSSRKHQ-GNNNIVVGTDFLETNKADRAMWLLKCPQAVTRALSNSPDAPS 60
           MDVDGKSIDR +SRKHQ  NNNIVVGTDFLETNKADRAMWLLKCPQ VTRALSNSPDAPS
Sbjct: 1   MDVDGKSIDRSTSRKHQTNNNNIVVGTDFLETNKADRAMWLLKCPQVVTRALSNSPDAPS 60

Query: 61  RPVAKVIVSVDPLQSNDDDDSSSTELTMTQWFQFTMELAGTDSGNALRSYSLNMSTDFIP 120
           RPVAKVIVSVDPLQSNDDDDSSSTE        FTMELA TDSGNALRSY+LNMSTDFIP
Sbjct: 61  RPVAKVIVSVDPLQSNDDDDSSSTE--------FTMELASTDSGNALRSYTLNMSTDFIP 120

Query: 121 MSVFSESSQ------GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQV 180
           MSVFSESSQ      GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQV
Sbjct: 121 MSVFSESSQDSSFVLGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQV 180

Query: 181 IDHVTGGHMRPMPGMDVLSFGAAEKKKVVTKGSETKRLRKERGELEKIIFRLFERQAYWT 240
           IDHVTGGHMRPMPGMDVLSFGAAEKKKVV+KGSETKRLRKERGELEKIIF+LFERQ YWT
Sbjct: 181 IDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFKLFERQPYWT 240

Query: 241 SKQLIQETDQPEQYMKEILKDLCVYNNKGAHQGTYELKPEYKESGEETKP 284
           SKQLIQETDQPEQYMKEILKDLCVYNNKG HQGTYELKPEYKES EETKP
Sbjct: 241 SKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESSEETKP 282

[Close]

BLAST of Cla97C09G181970 vs. ExPASy TrEMBL
Match: A0A6J1BZ89 (Transcription initiation factor IIF subunit beta OS=Momordica charantia OX=3673 GN=LOC111006053 PE=3 SV=1)

HSP 1 Score: 502.7 bits (1293), Expect = 1.0e-138
Identity = 259/284 (91.20%), Postives = 262/284 (92.25%), Query Frame = 0


Query: 1   MDVDGKSIDRCSSRKHQGNNNIV--VGTDFLETNKADRAMWLLKCPQAVTRALSNSPDAP 60
           MDVD K IDRCSSRK Q NNN V   GTDFLETNKADRAMWLLKCPQAVTRALSNSPD P
Sbjct: 1   MDVDDKPIDRCSSRKLQTNNNSVSGTGTDFLETNKADRAMWLLKCPQAVTRALSNSPDGP 60

Query: 61  SRPVAKVIVSVDPLQSNDDDDSSSTELTMTQWFQFTMELAGTDSGNALRSYSLNMSTDFI 120
           SRPVAKVIVSVDPLQSNDDDDSSSTE        FTMELAGTDSGN+LRSYSLNMSTDFI
Sbjct: 61  SRPVAKVIVSVDPLQSNDDDDSSSTE--------FTMELAGTDSGNSLRSYSLNMSTDFI 120

Query: 121 PMSVFSESSQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVT 180
           PMSVFSES  GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVT
Sbjct: 121 PMSVFSESPPGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVT 180

Query: 181 GGHMRPMPGMDVLSFGAAEKKKVVTKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLI 240
           GGHMRPMPGMDV SFGAAEKKKVV+KGSETKRLRKERGELEKIIFRLFERQ YWTSKQLI
Sbjct: 181 GGHMRPMPGMDVTSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQPYWTSKQLI 240

Query: 241 QETDQPEQYMKEILKDLCVYNNKGAHQGTYELKPEYKESGEETK 283
           QETDQPEQYMKEILKDLCVYNNKG HQGTYELKPEYKESG+ETK
Sbjct: 241 QETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGDETK 276

[Close]

BLAST of Cla97C09G181970 vs. ExPASy TrEMBL
Match: A0A6J1JIQ3 (Transcription initiation factor IIF subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111487292 PE=3 SV=1)

HSP 1 Score: 487.3 bits (1253), Expect = 4.5e-134
Identity = 250/283 (88.34%), Postives = 257/283 (90.81%), Query Frame = 0


Query: 1   MDVDGKSIDRCSSRKHQGNNNIVVGTDFLETNKADRAMWLLKCPQAVTRALSNSPDAPSR 60
           MD D K IDR SSRK   N++ V GTDFLETNKADRAMWLLKCPQ VTRALSNSPD PSR
Sbjct: 1   MDGDDKPIDRGSSRKLHSNSSTVAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSR 60

Query: 61  PVAKVIVSVDPLQSNDDDDSSSTELTMTQWFQFTMELAGTDSGNALRSYSLNMSTDFIPM 120
           PVAKVIVSVDPLQSNDDDDSSSTE        FTMELA TDSG ALR+YSLNMSTDFIPM
Sbjct: 61  PVAKVIVSVDPLQSNDDDDSSSTE--------FTMELADTDSGKALRAYSLNMSTDFIPM 120

Query: 121 SVFSESSQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGG 180
           SVFSES+QGKFTVEGKILNKFDMKPHDQNL+ YGKLCRERTHKSMTKSRQIQVIDHVTGG
Sbjct: 121 SVFSESAQGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGG 180

Query: 181 HMRPMPGMDVLSFGAAEKKKVVTKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQE 240
           HMRPMPGMDVLSFGAAEKKKVV+KGSE KRLRKERGELEKIIFRLFERQ YWTSKQLIQE
Sbjct: 181 HMRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERGELEKIIFRLFERQPYWTSKQLIQE 240

Query: 241 TDQPEQYMKEILKDLCVYNNKGAHQGTYELKPEYKESGEETKP 284
           TDQPEQYMKEILKDLCVYNNKG HQGTYELKPEYKE+ EETKP
Sbjct: 241 TDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKP 275

[Close]

BLAST of Cla97C09G181970 vs. ExPASy TrEMBL
Match: A0A6J1HK34 (Transcription initiation factor IIF subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111464830 PE=3 SV=1)

HSP 1 Score: 485.7 bits (1249), Expect = 1.3e-133
Identity = 249/283 (87.99%), Postives = 256/283 (90.46%), Query Frame = 0


Query: 1   MDVDGKSIDRCSSRKHQGNNNIVVGTDFLETNKADRAMWLLKCPQAVTRALSNSPDAPSR 60
           MD D K IDR SSRK   N++   GTDFLETNKADRAMWLLKCPQ VTRALSNSPD PSR
Sbjct: 1   MDGDDKPIDRGSSRKLHSNSSTAAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSR 60

Query: 61  PVAKVIVSVDPLQSNDDDDSSSTELTMTQWFQFTMELAGTDSGNALRSYSLNMSTDFIPM 120
           PVAKVIVSVDPLQSNDDDDSSSTE        FTMELA TDSG ALR+YSLNMSTDFIPM
Sbjct: 61  PVAKVIVSVDPLQSNDDDDSSSTE--------FTMELADTDSGKALRAYSLNMSTDFIPM 120

Query: 121 SVFSESSQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGG 180
           SVFSES+QGKFTVEGKILNKFDMKPHDQNL+ YGKLCRERTHKSMTKSRQIQVIDHVTGG
Sbjct: 121 SVFSESAQGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGG 180

Query: 181 HMRPMPGMDVLSFGAAEKKKVVTKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQE 240
           HMRPMPGMDVLSFGAAEKKKVV+KGSE KRLRKERGELEKIIFRLFERQ YWTSKQLIQE
Sbjct: 181 HMRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERGELEKIIFRLFERQPYWTSKQLIQE 240

Query: 241 TDQPEQYMKEILKDLCVYNNKGAHQGTYELKPEYKESGEETKP 284
           TDQPEQYMKEILKDLCVYNNKG HQGTYELKPEYKE+ EETKP
Sbjct: 241 TDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKP 275

[Close]

BLAST of Cla97C09G181970 vs. TAIR 10
Match: AT3G52270.1 (Transcription initiation factor IIF, beta subunit )

HSP 1 Score: 281.2 bits (718), Expect = 9.3e-76
Identity = 147/260 (56.54%), Postives = 188/260 (72.31%), Query Frame = 0


Query: 29  LETNKADRAMWLLKCPQAVTRALSN--------SPDAPSRPVAKVIVSVDPLQSNDDDDS 88
           LET  A+R+M L+K P  V  +L +         PD P RP AKVI+ VDPL   D+   
Sbjct: 23  LETGLAERSMLLMKAPSLVASSLQSHSFPDDPYRPDDPYRPDAKVILGVDPLAHEDEGT- 82

Query: 89  SSTELTMTQWFQFTMELAGTDSGNALRSYSLNMSTDFIPMSVFSESSQGKFTVEGKILNK 148
                      QF MELA  DSGN  R Y+L+MS DFIPM+VF ESS GK +VEGKI NK
Sbjct: 83  -----------QFVMELARADSGNMPRRYTLDMSKDFIPMNVFCESSDGKMSVEGKIKNK 142

Query: 149 FDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKK 208
           FDM+PH++N+E YG+LCRERT+K M K+RQIQVID+  G HMRPMPGM ++   A EKKK
Sbjct: 143 FDMRPHNENIESYGRLCRERTNKYMGKNRQIQVIDNARGMHMRPMPGM-IIPTAAPEKKK 202

Query: 209 VVTKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNN 268
           +  + SE KR R++R E+E+++F LFERQ+ WT + LIQETDQPEQ++K++LKDLC+YNN
Sbjct: 203 LTNRTSEMKRTRRDRREMEEVMFNLFERQSNWTLRLLIQETDQPEQFLKDLLKDLCIYNN 262

Query: 269 KGAHQGTYELKPEYKESGEE 281
           KG++QGTYELKPEYK++ +E
Sbjct: 263 KGSNQGTYELKPEYKKATQE 269

[Close]

BLAST of Cla97C09G181970 vs. TAIR 10
Match: AT1G75510.1 (Transcription initiation factor IIF, beta subunit )

HSP 1 Score: 240.7 bits (613), Expect = 1.4e-63
Identity = 132/264 (50.00%), Postives = 178/264 (67.42%), Query Frame = 0


Query: 29  LETNKADRAMWLLKCPQAVTRALSN----------SPDAPSRPVAKVIVSVDPLQSNDDD 88
           L+  K+DR++WL+KCP  V +A             S D+P   +AK++  VDPL+    D
Sbjct: 7   LDIEKSDRSIWLMKCPVVVDKAWHKIAASSSSSFASSDSPP-DMAKIVREVDPLR----D 66

Query: 89  DSSSTELTMTQWFQFTMELAGTDSGNALRSYSLNMSTDFIPMSVFSESSQGKFTVEGKIL 148
           DS           +F M + G + GN  + Y+LNM TDF+PM  FS+ +QG    EGK+ 
Sbjct: 67  DSPP---------EFKMYMVGAEYGNMPKCYALNMFTDFVPMGGFSDVNQGCAAAEGKVD 126

Query: 149 NKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGM-DVLSFGAAE 208
           +KFDMKP+ + +E Y +LCRERT K+M K+RQIQVID+  G HMRPMPGM  ++S  + E
Sbjct: 127 HKFDMKPYGETIEEYARLCRERTSKAMVKNRQIQVIDNDRGVHMRPMPGMLGLVSSNSKE 186

Query: 209 KKK-VVTKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLC 268
           K+K    K +E KR R++RGELE I+F+LFE Q  WT KQL+QETDQP Q++KEIL +LC
Sbjct: 187 KRKPPPVKQTEVKRTRRDRGELEAIMFKLFEGQPNWTLKQLVQETDQPAQFLKEILNELC 246

Query: 269 VYNNKGAHQGTYELKPEYKESGEE 281
           VYN +G++QGTYELKPEYK+S E+
Sbjct: 247 VYNKRGSNQGTYELKPEYKKSAED 256

The following BLAST results are available for this feature:

BLAST of Cla97C09G181970 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889594.1	1.3e-143	93.64	general transcription factor IIF subunit 2-like [Benincasa hispida] >XP_03888959...	[more]
XP_008465665.1	2.4e-142	92.96	PREDICTED: general transcription factor IIF subunit 2 isoform X2 [Cucumis melo]	[more]
XP_004143805.1	1.6e-141	92.25	general transcription factor IIF subunit 2 isoform X3 [Cucumis sativus] >KGN5163...	[more]
XP_008465664.1	2.3e-140	91.03	PREDICTED: general transcription factor IIF subunit 2 isoform X1 [Cucumis melo]	[more]
XP_022133483.1	2.1e-138	91.20	general transcription factor IIF subunit 2-like [Momordica charantia]	[more]

BLAST of Cla97C09G181970 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P41900	4.0e-15	26.89	General transcription factor IIF subunit 2 OS=Drosophila melanogaster OX=7227 GN...	[more]
Q8R0A0	1.2e-14	32.52	General transcription factor IIF subunit 2 OS=Mus musculus OX=10090 GN=Gtf2f2 PE...	[more]
P13984	2.0e-14	33.33	General transcription factor IIF subunit 2 OS=Homo sapiens OX=9606 GN=GTF2F2 PE=...	[more]
Q01750	2.0e-14	27.52	General transcription factor IIF subunit 2 OS=Rattus norvegicus OX=10116 GN=Gtf2...	[more]
Q2T9L9	2.6e-14	27.13	General transcription factor IIF subunit 2 OS=Bos taurus OX=9913 GN=GTF2F2 PE=2 ...	[more]

BLAST of Cla97C09G181970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CPB8	1.2e-142	92.96	Transcription initiation factor IIF subunit beta OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A1S3CPE2	1.1e-140	91.03	Transcription initiation factor IIF subunit beta OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A6J1BZ89	1.0e-138	91.20	Transcription initiation factor IIF subunit beta OS=Momordica charantia OX=3673 ...	[more]
A0A6J1JIQ3	4.5e-134	88.34	Transcription initiation factor IIF subunit beta OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1HK34	1.3e-133	87.99	Transcription initiation factor IIF subunit beta OS=Cucurbita moschata OX=3662 G...	[more]

BLAST of Cla97C09G181970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52270.1	9.3e-76	56.54	Transcription initiation factor IIF, beta subunit	[more]
AT1G75510.1	1.4e-63	50.00	Transcription initiation factor IIF, beta subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040450	TFIIF beta subunit, HTH domain	PFAM	PF02270	TFIIF_beta	coord: 212..275 e-value: 4.9E-22 score: 77.8
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 210..276 e-value: 2.4E-30 score: 106.4
None	No IPR available	PANTHER	PTHR10445:SF2	TRANSCRIPTION INITIATION FACTOR IIF, BETA SUBUNIT	coord: 20..281
IPR003196	Transcription initiation factor IIF, beta subunit	PANTHER	PTHR10445	GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2	coord: 20..281
IPR011039	Transcription Factor IIF, Rap30/Rap74, interaction	SUPERFAMILY	50916	Rap30/74 interaction domains	coord: 29..146
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 211..276

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C09G181970.2	Cla97C09G181970.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
biological_process	GO:0006366	transcription by RNA polymerase II
cellular_component	GO:0005674	transcription factor TFIIF complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008168	methyltransferase activity