Cla97C09G180200 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C09G180200
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	Unknown protein
Location	Cla97Chr09: 33843657 .. 33843963 (+)
RNA-Seq Expression	Cla97C09G180200
Synteny	Cla97C09G180200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCTTAAGAAATGTTTGGGTACGGTTCTAATTTGGATTGCTTGCTTGCTTGCTGCCATGACTACAGAAGCAGAAGCTCAGAGCTATGGCAGCTCTGATGCACCTGAGGCCTTATGTTCCCACTCCATGCTCCTCAAGTTTCTTGGTCTTATTGTTTCTCTTCTTGCCCTCAAAGAGATGGTTTGAGTTCTCTGATGTTCTGTCTGTCATTCTTTACTGTCATGTTAGAATTTCTTACTGTTTCTTCTTTGTCTGTCTTCGGAGTTTCTTCTTTGTTGTCTTTGAAGTTCCTGTGTCATCATAA

mRNA sequence

ATGGATCTTAAGAAATGTTTGGGTACGGTTCTAATTTGGATTGCTTGCTTGCTTGCTGCCATGACTACAGAAGCAGAAGCTCAGAGCTATGGCAGCTCTGATGCACCTGAGGCCTTATGTTCCCACTCCATGCTCCTCAAGTTTCTTGGTCTTATTAGATGGTTTGAGTTCTCTGATGTTCTGTCTGTCATTCTTTACTGTCATGTTAGAATTTCTTACTGTTTCTTCTTTGTCTGTCTTCGGAGTTTCTTCTTTGTTGTCTTTGAAGTTCCTGTGTCATCATAA

Coding sequence (CDS)

ATGGATCTTAAGAAATGTTTGGGTACGGTTCTAATTTGGATTGCTTGCTTGCTTGCTGCCATGACTACAGAAGCAGAAGCTCAGAGCTATGGCAGCTCTGATGCACCTGAGGCCTTATGTTCCCACTCCATGCTCCTCAAGTTTCTTGGTCTTATTAGATGGTTTGAGTTCTCTGATGTTCTGTCTGTCATTCTTTACTGTCATGTTAGAATTTCTTACTGTTTCTTCTTTGTCTGTCTTCGGAGTTTCTTCTTTGTTGTCTTTGAAGTTCCTGTGTCATCATAA

Protein sequence

MDLKKCLGTVLIWIACLLAAMTTEAEAQSYGSSDAPEALCSHSMLLKFLGLIRWFEFSDVLSVILYCHVRISYCFFFVCLRSFFFVVFEVPVSS

Homology

[Close]

BLAST of Cla97C09G180200 vs. NCBI nr
Match: KAA0037478.1 (hypothetical protein E6C27_scaffold277G00690 [Cucumis melo var. makuwa] >TYK01954.1 hypothetical protein E5676_scaffold808G00460 [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 1.8e-14
Identity = 42/52 (80.77%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 1  MDLKKCLGTVLIWIACLLAAMTTEAEAQSYGSSDAPEALCSHSMLLKFLGLI 53
          M+L+KCLG VLIW+ACLL +  TEAEAQSYGSSDAPEALCSHSML+KFLGL+
Sbjct: 1  MNLQKCLGMVLIWVACLLISTATEAEAQSYGSSDAPEALCSHSMLVKFLGLL 52

[Close]

BLAST of Cla97C09G180200 vs. NCBI nr
Match: KAE8648896.1 (hypothetical protein Csa_008661 [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 2.3e-12
Identity = 45/72 (62.50%), Postives = 52/72 (72.22%), Query Frame = 0


Query: 1  MDLKKCLGTVLIWIACLLAAMTTEAEAQSYGSSDAPEALCSHSMLLKFLGLIR-----WF 60
          MDL+KCLG VLIW+ACLL +M TEAEAQSYGSSDAPEAL SHSML     ++R      F
Sbjct: 1  MDLRKCLGMVLIWVACLLVSMATEAEAQSYGSSDAPEALHSHSMLFNSCFIMRVVVLTVF 60

Query: 61 EFSDVLSVILYC 68
          E +D + VI  C
Sbjct: 61 ESADDIEVISIC 72

[Close]

BLAST of Cla97C09G180200 vs. ExPASy TrEMBL
Match: A0A5A7T3W0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G00460 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 9.0e-15
Identity = 42/52 (80.77%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 1  MDLKKCLGTVLIWIACLLAAMTTEAEAQSYGSSDAPEALCSHSMLLKFLGLI 53
          M+L+KCLG VLIW+ACLL +  TEAEAQSYGSSDAPEALCSHSML+KFLGL+
Sbjct: 1  MNLQKCLGMVLIWVACLLISTATEAEAQSYGSSDAPEALCSHSMLVKFLGLL 52

[Close]

BLAST of Cla97C09G180200 vs. ExPASy TrEMBL
Match: A0A0A0KS19 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G630950 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.6e-14
Identity = 58/95 (61.05%), Postives = 64/95 (67.37%), Query Frame = 0


Query: 1  MDLKKCLGTVLIWIACLLAAMTTEAEAQSYGSSDAPEALCSHSMLLK-FLGLIRWFEFSD 60
          MDL+KCLG VLIW+ACLL +M TEAEAQSYGSSDAPEAL SHSML K  L  +      +
Sbjct: 1  MDLRKCLGMVLIWVACLLVSMATEAEAQSYGSSDAPEALHSHSMLFKDCLSSL----MDN 60

Query: 61 VLSVILYCHVRISYCFFFVCLRSFFFVVFEVPVSS 95
           L VILYC+V     F  V   S    VFEVPVSS
Sbjct: 61 DLPVILYCNVE----FLVVSTLS----VFEVPVSS 83

The following BLAST results are available for this feature:

BLAST of Cla97C09G180200 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0037478.1	1.8e-14	80.77	hypothetical protein E6C27_scaffold277G00690 [Cucumis melo var. makuwa] >TYK0195...	[more]
KAE8648896.1	2.3e-12	62.50	hypothetical protein Csa_008661 [Cucumis sativus]	[more]

BLAST of Cla97C09G180200 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cla97C09G180200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T3W0	9.0e-15	80.77	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KS19	2.6e-14	61.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G630950 PE=4 SV=1	[more]

BLAST of Cla97C09G180200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..16 score: 6.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C09G180200.1	Cla97C09G180200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane