Cla97C09G177962 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C09G177962
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	Reverse transcriptase domain-containing protein
Location	Cla97Chr09: 29853376 .. 29853663 (+)
RNA-Seq Expression	Cla97C09G177962
Synteny	Cla97C09G177962

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAGAAAAGGTGATTTCAATCATTGAACGTGTGATGAGGAACTTCTTTTGGGAAGGCCACAAAGGGGGGAAGTTGAGTCATCTAGTTAGATGGGACTTGGTGACTCGAAATCAATTCGACGGTGGCTTTGGAATTGGTGGTTTGAAATCAAAGAATATTGCCCTTTTAGCCAAATGGGGCTGGCGGTATATGAAGGAAGAGGACTCCCTTTGGGTGTCAAGTAGTGCGAAGCATTCATGGAAGAAACTTGTTCGGTTGGCACACAAGTGGAGTAGTCAAGAGTAG

mRNA sequence

ATGCCAGAAAAGGTGATTTCAATCATTGAACGTGTGATGAGGAACTTCTTTTGGGAAGGCCACAAAGGGGGGAAGTTGAGTCATCTAGTTAGATGGGACTTGGTGACTCGAAATCAATTCGACGGTGGCTTTGGAATTGGTGGTTTGAAATCAAAGAATATTGCCCTTTTAGCCAAATGGGGCTGGCGGTATATGAAGGAAGAGGACTCCCTTTGGGTGTCAAGTAGTGCGAAGCATTCATGGAAGAAACTTGTTCGGTTGGCACACAAGTGGAGTAGTCAAGAGTAG

Coding sequence (CDS)

ATGCCAGAAAAGGTGATTTCAATCATTGAACGTGTGATGAGGAACTTCTTTTGGGAAGGCCACAAAGGGGGGAAGTTGAGTCATCTAGTTAGATGGGACTTGGTGACTCGAAATCAATTCGACGGTGGCTTTGGAATTGGTGGTTTGAAATCAAAGAATATTGCCCTTTTAGCCAAATGGGGCTGGCGGTATATGAAGGAAGAGGACTCCCTTTGGGTGTCAAGTAGTGCGAAGCATTCATGGAAGAAACTTGTTCGGTTGGCACACAAGTGGAGTAGTCAAGAGTAG

Protein sequence

MPEKVISIIERVMRNFFWEGHKGGKLSHLVRWDLVTRNQFDGGFGIGGLKSKNIALLAKWGWRYMKEEDSLWVSSSAKHSWKKLVRLAHKWSSQE

Homology

[Close]

BLAST of Cla97C09G177962 vs. NCBI nr
Match: XP_038880332.1 (uncharacterized protein LOC120071973 [Benincasa hispida])

HSP 1 Score: 119.8 bits (299), Expect = 1.3e-23
Identity = 46/72 (63.89%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 1   MPEKVISIIERVMRNFFWEGHKGGKLSHLVRWDLVTRNQFDGGFGIGGLKSKNIALLAKW 60
           +PEKV+ I+ER M+NFFWEGHKGGK++HLV+W+LVT+ Q DGG G+GGL+++N+A LAKW
Sbjct: 223 LPEKVLGIMERTMKNFFWEGHKGGKINHLVKWELVTKAQEDGGLGLGGLRARNLAFLAKW 282

Query: 61  GWRYMKEEDSLW 73
           GWR +  E++LW
Sbjct: 283 GWRLLHNENTLW 294

[Close]

BLAST of Cla97C09G177962 vs. NCBI nr
Match: KAA0046077.1 (putative DEAD-box ATP-dependent RNA helicase 29 [Cucumis melo var. makuwa])

HSP 1 Score: 110.9 bits (276), Expect = 6.0e-21
Identity = 42/72 (58.33%), Postives = 60/72 (83.33%), Query Frame = 0


Query: 1  MPEKVISIIERVMRNFFWEGHKGGKLSHLVRWDLVTRNQFDGGFGIGGLKSKNIALLAKW 60
          +P+ V+S +ER++RNFFWEGH G K++ LV+W+ V ++  DGG G+G  K+KN+ALLAKW
Sbjct: 6  VPKGVLSTLERILRNFFWEGHNGSKINQLVKWETVNKSIADGGLGLGSFKAKNLALLAKW 65

Query: 61 GWRYMKEEDSLW 73
          GW+YM+EED+LW
Sbjct: 66 GWQYMEEEDALW 77

[Close]

BLAST of Cla97C09G177962 vs. NCBI nr
Match: TYK09445.1 (putative DEAD-box ATP-dependent RNA helicase 29 [Cucumis melo var. makuwa])

HSP 1 Score: 110.9 bits (276), Expect = 6.0e-21
Identity = 42/72 (58.33%), Postives = 60/72 (83.33%), Query Frame = 0


Query: 1  MPEKVISIIERVMRNFFWEGHKGGKLSHLVRWDLVTRNQFDGGFGIGGLKSKNIALLAKW 60
          +P+ V+S +ER++RNFFWEGH G K++ LV+W+ V ++  DGG G+G  K+KN+ALLAKW
Sbjct: 6  VPKGVLSTLERILRNFFWEGHNGSKINQLVKWETVNKSIADGGLGLGSFKAKNLALLAKW 65

Query: 61 GWRYMKEEDSLW 73
          GW+YM+EED+LW
Sbjct: 66 GWQYMEEEDALW 77

[Close]

BLAST of Cla97C09G177962 vs. NCBI nr
Match: TYK09922.1 (uncharacterized protein E5676_scaffold16G00380 [Cucumis melo var. makuwa])

HSP 1 Score: 105.9 bits (263), Expect = 1.9e-19
Identity = 46/72 (63.89%), Postives = 57/72 (79.17%), Query Frame = 0


Query: 1   MPEKVISIIERVMRNFFWEGHKGGKLSHLVRWDLVTRNQFDGGFGIGGLKSKNIALLAKW 60
           MPE VIS  ER++RNFFWEG KG K++HLV W+ VTR+  DG    GG K++N+ALL KW
Sbjct: 44  MPEGVISKPERILRNFFWEGQKGSKINHLVGWETVTRDLVDG----GGYKARNMALLVKW 103

Query: 61  GWRYMKEEDSLW 73
           GWRY++EEDSLW
Sbjct: 104 GWRYLEEEDSLW 111

[Close]

BLAST of Cla97C09G177962 vs. NCBI nr
Match: KAA0055668.1 (uncharacterized protein E6C27_scaffold181G00360 [Cucumis melo var. makuwa])

HSP 1 Score: 104.8 bits (260), Expect = 4.3e-19
Identity = 45/72 (62.50%), Postives = 57/72 (79.17%), Query Frame = 0


Query: 1  MPEKVISIIERVMRNFFWEGHKGGKLSHLVRWDLVTRNQFDGGFGIGGLKSKNIALLAKW 60
          MPE VIS  ER++RNFFWEG KG K++HLV W+ VTR+  DGG+     K++N+ALL KW
Sbjct: 6  MPEGVISKPERILRNFFWEGQKGSKINHLVGWETVTRDLVDGGY-----KARNMALLVKW 65

Query: 61 GWRYMKEEDSLW 73
          GWRY++EEDSLW
Sbjct: 66 GWRYLEEEDSLW 72

[Close]

BLAST of Cla97C09G177962 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.2e-10
Identity = 26/72 (36.11%), Postives = 45/72 (62.50%), Query Frame = 0


Query: 1   MPEKVISIIERVMRNFFWEGHKGGKLSHLVRWDLVTRNQFDGGFGIGGLKSKNIALLAKW 60
           +P+ +++ ++++ R F W      K  HLV+W  V   + +GG G+   KS N AL++K 
Sbjct: 58  LPQSILNRLDQLSRTFLWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKV 117

Query: 61  GWRYMKEEDSLW 73
           GWR ++E++SLW
Sbjct: 118 GWRLLQEKNSLW 129

[Close]

BLAST of Cla97C09G177962 vs. ExPASy TrEMBL
Match: A0A5D3CD49 (RNA helicase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G00330 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.9e-21
Identity = 42/72 (58.33%), Postives = 60/72 (83.33%), Query Frame = 0


Query: 1  MPEKVISIIERVMRNFFWEGHKGGKLSHLVRWDLVTRNQFDGGFGIGGLKSKNIALLAKW 60
          +P+ V+S +ER++RNFFWEGH G K++ LV+W+ V ++  DGG G+G  K+KN+ALLAKW
Sbjct: 6  VPKGVLSTLERILRNFFWEGHNGSKINQLVKWETVNKSIADGGLGLGSFKAKNLALLAKW 65

Query: 61 GWRYMKEEDSLW 73
          GW+YM+EED+LW
Sbjct: 66 GWQYMEEEDALW 77

[Close]

BLAST of Cla97C09G177962 vs. ExPASy TrEMBL
Match: A0A5A7TW08 (Putative DEAD-box ATP-dependent RNA helicase 29 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1096G00330 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.9e-21
Identity = 42/72 (58.33%), Postives = 60/72 (83.33%), Query Frame = 0


Query: 1  MPEKVISIIERVMRNFFWEGHKGGKLSHLVRWDLVTRNQFDGGFGIGGLKSKNIALLAKW 60
          +P+ V+S +ER++RNFFWEGH G K++ LV+W+ V ++  DGG G+G  K+KN+ALLAKW
Sbjct: 6  VPKGVLSTLERILRNFFWEGHNGSKINQLVKWETVNKSIADGGLGLGSFKAKNLALLAKW 65

Query: 61 GWRYMKEEDSLW 73
          GW+YM+EED+LW
Sbjct: 66 GWQYMEEEDALW 77

[Close]

BLAST of Cla97C09G177962 vs. ExPASy TrEMBL
Match: A0A5D3CF41 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G00380 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 9.3e-20
Identity = 46/72 (63.89%), Postives = 57/72 (79.17%), Query Frame = 0


Query: 1   MPEKVISIIERVMRNFFWEGHKGGKLSHLVRWDLVTRNQFDGGFGIGGLKSKNIALLAKW 60
           MPE VIS  ER++RNFFWEG KG K++HLV W+ VTR+  DG    GG K++N+ALL KW
Sbjct: 44  MPEGVISKPERILRNFFWEGQKGSKINHLVGWETVTRDLVDG----GGYKARNMALLVKW 103

Query: 61  GWRYMKEEDSLW 73
           GWRY++EEDSLW
Sbjct: 104 GWRYLEEEDSLW 111

[Close]

BLAST of Cla97C09G177962 vs. ExPASy TrEMBL
Match: A0A5A7UKS5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G00360 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.1e-19
Identity = 45/72 (62.50%), Postives = 57/72 (79.17%), Query Frame = 0


Query: 1  MPEKVISIIERVMRNFFWEGHKGGKLSHLVRWDLVTRNQFDGGFGIGGLKSKNIALLAKW 60
          MPE VIS  ER++RNFFWEG KG K++HLV W+ VTR+  DGG+     K++N+ALL KW
Sbjct: 6  MPEGVISKPERILRNFFWEGQKGSKINHLVGWETVTRDLVDGGY-----KARNMALLVKW 65

Query: 61 GWRYMKEEDSLW 73
          GWRY++EEDSLW
Sbjct: 66 GWRYLEEEDSLW 72

[Close]

BLAST of Cla97C09G177962 vs. ExPASy TrEMBL
Match: A0A5D3CSP2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G00990 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.9e-18
Identity = 39/72 (54.17%), Postives = 55/72 (76.39%), Query Frame = 0


Query: 1  MPEKVISIIERVMRNFFWEGHKGGKLSHLVRWDLVTRNQFDGGFGIGGLKSKNIALLAKW 60
          +PE V   +E+++RNFFWEG+ G K++H V W  VT +  DG  G+GG+++K++ALLAKW
Sbjct: 17 IPENVAFALEKLIRNFFWEGNSGSKINHFVSWKKVTSSLLDGRLGLGGIRNKSMALLAKW 76

Query: 61 GWRYMKEEDSLW 73
          GWRYMKE  +LW
Sbjct: 77 GWRYMKENTALW 88

The following BLAST results are available for this feature:

BLAST of Cla97C09G177962 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038880332.1	1.3e-23	63.89	uncharacterized protein LOC120071973 [Benincasa hispida]	[more]
KAA0046077.1	6.0e-21	58.33	putative DEAD-box ATP-dependent RNA helicase 29 [Cucumis melo var. makuwa]	[more]
TYK09445.1	6.0e-21	58.33	putative DEAD-box ATP-dependent RNA helicase 29 [Cucumis melo var. makuwa]	[more]
TYK09922.1	1.9e-19	63.89	uncharacterized protein E5676_scaffold16G00380 [Cucumis melo var. makuwa]	[more]
KAA0055668.1	4.3e-19	62.50	uncharacterized protein E6C27_scaffold181G00360 [Cucumis melo var. makuwa]	[more]

BLAST of Cla97C09G177962 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C2F6	2.2e-10	36.11	Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1...	[more]

BLAST of Cla97C09G177962 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CD49	2.9e-21	58.33	RNA helicase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G00330 P...	[more]
A0A5A7TW08	2.9e-21	58.33	Putative DEAD-box ATP-dependent RNA helicase 29 OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3CF41	9.3e-20	63.89	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UKS5	2.1e-19	62.50	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CSP2	3.9e-18	54.17	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Cla97C09G177962 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C09G177962.1	Cla97C09G177962.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071704	organic substance metabolic process
biological_process	GO:0016310	phosphorylation
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds
molecular_function	GO:0004672	protein kinase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003724	RNA helicase activity