Cla97C09G176465 (gene) Watermelon (97103) v2.5

Overview
NameCla97C09G176465
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
LocationCla97Chr09: 21420932 .. 21424303 (+)
RNA-Seq ExpressionCla97C09G176465
SyntenyCla97C09G176465
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACAATCTATGTGTAAAATAGTGTGGATACACCAACTGTTATCCGAGATGGGATTCAATGTTGTCATGCCAGCTAAATTATGGTGGGATAATAAAGCTACACGTCACATTGCATCTAACCTAGTGTTTCATGAACGGACTAAACATATTGAAGTGGATTATCATTTCATTCGCGAGAAAATACAAGAAGGGTTGGTGTCCACAGGATATGTGAAGACTGGAGAACAATTGGGAGATATTCTTACCAAAGTTGTAAATGGAGCAAGGACTACTTATGCAACAAGCTGAGCATGATTGACATATTTGCTCCAGCTTGAGGGGAGTATTATAATACATGTTTTACATGTTTATGTATAATTGTCCTTTATCATAACTGTACATACCTAGTTTAGGGTTTCTTTGTTCGCTATATATATGTAACTTTATTCTAAATAATGTGACTGAGAATATATTCTAAGAGTACAACTGCCAGCCCTGGTAAAATAGTTTGGACCATTGAAGCCATGGTAAAAGAGTTTGGACCATTGAAGCCAATGGTGTTTTTTCCGGTGCAATCCTTAGTCACTCATCTCTCAAGAGCTTCCCCCTTAGATATAAACTTGAAGAAAGCATTATGGAGTTCTAGCAGTCCTCAGCGGGTGAATATATCAGTTTGGATAATGCTGTTTGGGCATTTAAATTGTGCTTCTGTCCTGCAAAGGAAAATGCTACAGCACTGTCTTTCGCCCAGCATTTGTCCTCTTTGTTTGGCTGATAGGAAGACCTACAGCATTTTTTTTATTATTATTATTTTTATGCAGAAAAATGTTGAACTAATTTATTTTCTTTCTTCAATTTATCTTGGGTATTTGGAAGCTCTTTTTGTGATAATGTTTTGCAGATTTTAGTGGGTCCTAAGCTCAAACCAGCCCCTAAATTATTGTGGAGGTGGAACAAGGCGGTCAAAGCTTTGCTCACAGCATTATGGCTTGAAAGAGGTCAAAGCTTTGCTTACAGAATTATGGCTTGAAAGAAATCAAAAGAGTTTTCCACAATAAGACTACTCCTTGGTCTAACCGTTTTCTGATAGTTCGGCTAAACACTCCTGGTGCACACTTGCAAAAGAATTCGCTGAATACTCCATCCAAGATTTGAGTCTCAACTGGACCGCCTTTATCTTTCCAGCACCTTAGAATTTAGTTTTTTCTTTTTAAGAGATTTTGTGTGTTTCTTTAGATTCATGGTTTTAGTTCTGTTGGTTTTGGACCACTGTATTCAGTCTTTTCACTAATTCTCACTAGTTCTTTGAACGCTTATTGGATGTTTAATTTTTGTAAGTTGTGTGGAGATAATGAGAGTGCTAAGGAGGTGTCAACCTAGTTAAGATGTTCGGGTGCACGCACTGATCCTTTGGTTTTCACGCGTATGTTTCCAATTTTGTATATTGAGTTTTCGTCTCAATTCATTATATCAATGAAAGACACTTGTTTCGAAGGGGAATAGGAAGGTAAGTATGCTCTCTTATCTTTCCTCTATTCCCACACCCCCTCCCCCTCTCTTCTCCGTTCAATAGCTCCGGCCAGCCTCTGTTCTACCCAATCTTTCCCCTTGTCTAACACTTTCTTAAGTATGGAAGTGAAAAGTTGCAACACGAACAGTTTCTACTTTTGTATTTGGCACGAATCTAGTTCCTTTCACGTGGAAGACTTGGAAGCCAACAAGATCGTTCTCTCAAAGTCGCAACTCAAGTGGTTCGTCGAAAATATTTTAGATTTGATTAAGGGCTCTACATCACGATTCTTTGAGAGAAGCTATCGAGACAATTCAGGTACCACAAAATTGTCTAAGTTCCTCAGCTCCACAAGTTGGATTATGAGATGTGTTGTTTGGCCATCCTTTGGGGGAAGATACTTTATTCGTATTCCCTCCGAAGATTCAAAGCAAGGTTGGTATTCCTTTGCTGTAATGCTCCTAGATTTTCATAAAAACTTCGAAGTATCTACAAAGTCATCTAAGAAGGAAATCATCAACCTTAGTTTTGCCAAACCAAGGTGAAGACTTGGTGGACCTTGTGAAGACATCGGAAGCTCAAAAGAAACAGAGAATGAAATTGGCAGCTCCTCCATATCTAAAACATGGCTCTATTTTAGTACCCGATAAACAGAGTAAGTACCATCATTGGGTGTCAAAGAATTCTAAAGTCAATGCATTAATAAAGTTGGACCAAGGATCTTTAGAGGATTTAATTGAAAAACTGGACAGTTGGCAAAATTGTGGTTCATTCCACCTAAAATTTGAAAATGGAACATGAAGGTGCACAGTCGGCCTTTGTATTCAAAAGGTTATGGAGAATGGATTTCCATAAAAAATCTCCCACTAGATTATTGGTGTAGACCAACTTTTGAAGCCATTGGAGCCTATTTTGGAGGTTTAGAAGATATTGCAACAGAAACATTGAACCTTCTTAACGTCTCTAAAGCCAAGATTCAAGTTTAAAAAAATTCATGTGGTCTCATTCTGTCTACTATAGAGATTTCAAACAAGAAGCATGACTCAATTTTTCTGAATTTTGGGGACATTGAATTAATTAATCCTCCTTCAAGAATAAAAGATGATTTATTTGCTAAGGATTGTACAAACCCAATTGATTTAGTCCGTTTGAATCAAGTTTTAAAGGACAAAGGAGTAGAGGTTGAAGATCCAAATCCTGGACTAGCATTTTTGTTACCTTCTCGGCTTTCCCGGGGAAGTTTCTCGCCGGAAAAGCCATCGGAAGCTGGTTGTCCAGCCTCATCTGAACCCGATTCCAAGGTAGGTGTTGATCGACATTTATTGAAGAATGAGAAAGAAGGTGAGGAGTCGGCCTCTGGCCAAGAAAAGACCCTTGGTATCCCCTTGAAAAAAGCCCAATCGGTCTTTGCCGTCAAGGATAGAGATTCTTTAGCAGTTACACTTCCCAAGAGGTCCAGCCCCATTGAATTCTCACCCTCAAAAGTTAATGCTGCCAGTTTCCTATCCAATGAACAGGAATTAATGCTCAATGAAATAGCCCCACTCCTGCAGCAACTTTCTCAAAGCCTTTCGGCCCCCAACCATTCATCGCCGGAAAAGCCATCGAAAGCTGGTTGTCCGGCCTCATCTGAACCCGATTCCAAGGTAGGTGTTGATCGACATTTATTGAAGAATGAGAAAGAAGGTGAGGAGTCGGCCTCTGGCCAAGAAAAGACCCTTGGTATCCCTTTGAAAGAAGCCCAATCGGTCTTTGCCGCCAAGGATAGAGATTCTTCAGCCGTTACACTTCCCAAGAGGTCCAGCCCCATTGAATTCTCACCCTCAAAAGTTAATGCTGCCGGTTTCCTATCCAATGAAAAGGAATCTAATGCTCGATGA

mRNA sequence

ATGGCACAATCTATGTGTAAAATAGTGTGGATACACCAACTGTTATCCGAGATGGGATTCAATGTTGTCATGCCAGCTAAATTATGGTGGGATAATAAAGCTACACGTCACATTGCATCTAACCTAGTGTTTCATGAACGGACTAAACATATTGAAGTGGATTATCATTTCATTCGCGAGAAAATACAAGAAGGGTTGGTGTCCACAGGATATGTGAAGACTGGAGAACAATTGGGAGATATTCTTACCAAAGTTATTTTAGTGGGTCCTAAGCTCAAACCAGCCCCTAAATTATTGTGGAGGTGGAACAAGGCGGTCAAAGCTTTGCTCACAGCATTATGGCTTGAAAGAGACTTGGAAGCCAACAAGATCGTTCTCTCAAAGTCGCAACTCAAGTGGTTCGTCGAAAATATTTTAGATTTGATTAAGGGCTCTACATCACGATTCTTTGAGAGAAGCTATCGAGACAATTCAGGTACCACAAAATTGTCTAAGTTCCTCAGCTCCACAAGTTGGATTATGAGATGTGTTGTTTGGCCATCCTTTGGGGGAAGATACTTTATTCGTATTCCCTCCGAAGATTCAAAGCAAGGTGAAGACTTGGTGGACCTTGTGAAGACATCGGAAGCTCAAAAGAAACAGAGAATGAAATTGGCAGCTCCTCCATATCTAAAACATGGCTCTATTTTAGTACCCGATAAACAGAAGATTTCAAACAAGAAGCATGACTCAATTTTTCTGAATTTTGGGGACATTGAATTAATTAATCCTCCTTCAAGAATAAAAGATGATTTATTTGCTAAGGATTGTACAAACCCAATTGATTTAGTCCGTTTGAATCAAGTTTTAAAGGACAAAGGAGTAGAGGTTGAAGATCCAAATCCTGGACTAGCATTTTTGTTACCTTCTCGGCTTTCCCGGGGAAGTTTCTCGCCGGAAAAGCCATCGGAAGCTGGTTGTCCAGCCTCATCTGAACCCGATTCCAAGGTAGGTGTTGATCGACATTTATTGAAGAATGAGAAAGAAGGTGAGGAGTCGGCCTCTGGCCAAGAAAAGACCCTTGGTATCCCCTTGAAAAAAGCCCAATCGGTCTTTGCCGTCAAGGATAGAGATTCTTTAGCAGTTACACTTCCCAAGAGGTCCAGCCCCATTGAATTCTCACCCTCAAAAGTTAATGCTGCCAGTTTCCTATCCAATGAACAGGAATTAATGCTCAATGAAATAGCCCCACTCCTGCAGCAACTTTCTCAAAGCCTTTCGGCCCCCAACCATTCATCGCCGGAAAAGCCATCGAAAGCTGGTTGTCCGGCCTCATCTGAACCCGATTCCAAGGTAGGTGTTGATCGACATTTATTGAAGAATGAGAAAGAAGGTGAGGAGTCGGCCTCTGGCCAAGAAAAGACCCTTGGTATCCCTTTGAAAGAAGCCCAATCGGTCTTTGCCGCCAAGGATAGAGATTCTTCAGCCGTTACACTTCCCAAGAGGTCCAGCCCCATTGAATTCTCACCCTCAAAAGTTAATGCTGCCGGTTTCCTATCCAATGAAAAGGAATCTAATGCTCGATGA

Coding sequence (CDS)

ATGGCACAATCTATGTGTAAAATAGTGTGGATACACCAACTGTTATCCGAGATGGGATTCAATGTTGTCATGCCAGCTAAATTATGGTGGGATAATAAAGCTACACGTCACATTGCATCTAACCTAGTGTTTCATGAACGGACTAAACATATTGAAGTGGATTATCATTTCATTCGCGAGAAAATACAAGAAGGGTTGGTGTCCACAGGATATGTGAAGACTGGAGAACAATTGGGAGATATTCTTACCAAAGTTATTTTAGTGGGTCCTAAGCTCAAACCAGCCCCTAAATTATTGTGGAGGTGGAACAAGGCGGTCAAAGCTTTGCTCACAGCATTATGGCTTGAAAGAGACTTGGAAGCCAACAAGATCGTTCTCTCAAAGTCGCAACTCAAGTGGTTCGTCGAAAATATTTTAGATTTGATTAAGGGCTCTACATCACGATTCTTTGAGAGAAGCTATCGAGACAATTCAGGTACCACAAAATTGTCTAAGTTCCTCAGCTCCACAAGTTGGATTATGAGATGTGTTGTTTGGCCATCCTTTGGGGGAAGATACTTTATTCGTATTCCCTCCGAAGATTCAAAGCAAGGTGAAGACTTGGTGGACCTTGTGAAGACATCGGAAGCTCAAAAGAAACAGAGAATGAAATTGGCAGCTCCTCCATATCTAAAACATGGCTCTATTTTAGTACCCGATAAACAGAAGATTTCAAACAAGAAGCATGACTCAATTTTTCTGAATTTTGGGGACATTGAATTAATTAATCCTCCTTCAAGAATAAAAGATGATTTATTTGCTAAGGATTGTACAAACCCAATTGATTTAGTCCGTTTGAATCAAGTTTTAAAGGACAAAGGAGTAGAGGTTGAAGATCCAAATCCTGGACTAGCATTTTTGTTACCTTCTCGGCTTTCCCGGGGAAGTTTCTCGCCGGAAAAGCCATCGGAAGCTGGTTGTCCAGCCTCATCTGAACCCGATTCCAAGGTAGGTGTTGATCGACATTTATTGAAGAATGAGAAAGAAGGTGAGGAGTCGGCCTCTGGCCAAGAAAAGACCCTTGGTATCCCCTTGAAAAAAGCCCAATCGGTCTTTGCCGTCAAGGATAGAGATTCTTTAGCAGTTACACTTCCCAAGAGGTCCAGCCCCATTGAATTCTCACCCTCAAAAGTTAATGCTGCCAGTTTCCTATCCAATGAACAGGAATTAATGCTCAATGAAATAGCCCCACTCCTGCAGCAACTTTCTCAAAGCCTTTCGGCCCCCAACCATTCATCGCCGGAAAAGCCATCGAAAGCTGGTTGTCCGGCCTCATCTGAACCCGATTCCAAGGTAGGTGTTGATCGACATTTATTGAAGAATGAGAAAGAAGGTGAGGAGTCGGCCTCTGGCCAAGAAAAGACCCTTGGTATCCCTTTGAAAGAAGCCCAATCGGTCTTTGCCGCCAAGGATAGAGATTCTTCAGCCGTTACACTTCCCAAGAGGTCCAGCCCCATTGAATTCTCACCCTCAAAAGTTAATGCTGCCGGTTTCCTATCCAATGAAAAGGAATCTAATGCTCGATGA

Protein sequence

MAQSMCKIVWIHQLLSEMGFNVVMPAKLWWDNKATRHIASNLVFHERTKHIEVDYHFIREKIQEGLVSTGYVKTGEQLGDILTKVILVGPKLKPAPKLLWRWNKAVKALLTALWLERDLEANKIVLSKSQLKWFVENILDLIKGSTSRFFERSYRDNSGTTKLSKFLSSTSWIMRCVVWPSFGGRYFIRIPSEDSKQGEDLVDLVKTSEAQKKQRMKLAAPPYLKHGSILVPDKQKISNKKHDSIFLNFGDIELINPPSRIKDDLFAKDCTNPIDLVRLNQVLKDKGVEVEDPNPGLAFLLPSRLSRGSFSPEKPSEAGCPASSEPDSKVGVDRHLLKNEKEGEESASGQEKTLGIPLKKAQSVFAVKDRDSLAVTLPKRSSPIEFSPSKVNAASFLSNEQELMLNEIAPLLQQLSQSLSAPNHSSPEKPSKAGCPASSEPDSKVGVDRHLLKNEKEGEESASGQEKTLGIPLKEAQSVFAAKDRDSSAVTLPKRSSPIEFSPSKVNAAGFLSNEKESNAR
Homology
[Close]
BLAST of Cla97C09G176465 vs. NCBI nr
Match: XP_031744754.1 (uncharacterized protein LOC101212255 isoform X2 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 8.3e-32
Identity = 70/86 (81.40%), Postives = 79/86 (91.86%), Query Frame = 0 

Query: 1    MAQSMCKIVWIHQLLSEMGFNVVMPAKLWWDNKATRHIASNLVFHERTKHIEVDYHFIRE 60
            MAQS+C+IVWIHQLLSE+GF++ +PAKLW DN+A  HIASN VFHERTKHIEVD HFIRE
Sbjct: 1241 MAQSVCEIVWIHQLLSEIGFSITVPAKLWCDNQAALHIASNPVFHERTKHIEVDCHFIRE 1300

Query: 61   KIQEGLVSTGYVKTGEQLGDILTKVI 87
            KIQ+GLVSTGYVKTGEQLGDILTK +
Sbjct: 1301 KIQDGLVSTGYVKTGEQLGDILTKAL 1326

[Close]
BLAST of Cla97C09G176465 vs. NCBI nr
Match: XP_031744758.1 (uncharacterized protein LOC101212255 isoform X5 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 8.3e-32
Identity = 70/86 (81.40%), Postives = 79/86 (91.86%), Query Frame = 0 

Query: 1   MAQSMCKIVWIHQLLSEMGFNVVMPAKLWWDNKATRHIASNLVFHERTKHIEVDYHFIRE 60
           MAQS+C+IVWIHQLLSE+GF++ +PAKLW DN+A  HIASN VFHERTKHIEVD HFIRE
Sbjct: 864 MAQSVCEIVWIHQLLSEIGFSITVPAKLWCDNQAALHIASNPVFHERTKHIEVDCHFIRE 923

Query: 61  KIQEGLVSTGYVKTGEQLGDILTKVI 87
           KIQ+GLVSTGYVKTGEQLGDILTK +
Sbjct: 924 KIQDGLVSTGYVKTGEQLGDILTKAL 949

[Close]
BLAST of Cla97C09G176465 vs. NCBI nr
Match: XP_031744753.1 (uncharacterized protein LOC101212255 isoform X1 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 8.3e-32
Identity = 70/86 (81.40%), Postives = 79/86 (91.86%), Query Frame = 0 

Query: 1    MAQSMCKIVWIHQLLSEMGFNVVMPAKLWWDNKATRHIASNLVFHERTKHIEVDYHFIRE 60
            MAQS+C+IVWIHQLLSE+GF++ +PAKLW DN+A  HIASN VFHERTKHIEVD HFIRE
Sbjct: 1256 MAQSVCEIVWIHQLLSEIGFSITVPAKLWCDNQAALHIASNPVFHERTKHIEVDCHFIRE 1315

Query: 61   KIQEGLVSTGYVKTGEQLGDILTKVI 87
            KIQ+GLVSTGYVKTGEQLGDILTK +
Sbjct: 1316 KIQDGLVSTGYVKTGEQLGDILTKAL 1341

[Close]
BLAST of Cla97C09G176465 vs. NCBI nr
Match: XP_031744755.1 (uncharacterized protein LOC101212255 isoform X3 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 8.3e-32
Identity = 70/86 (81.40%), Postives = 79/86 (91.86%), Query Frame = 0 

Query: 1    MAQSMCKIVWIHQLLSEMGFNVVMPAKLWWDNKATRHIASNLVFHERTKHIEVDYHFIRE 60
            MAQS+C+IVWIHQLLSE+GF++ +PAKLW DN+A  HIASN VFHERTKHIEVD HFIRE
Sbjct: 1208 MAQSVCEIVWIHQLLSEIGFSITVPAKLWCDNQAALHIASNPVFHERTKHIEVDCHFIRE 1267

Query: 61   KIQEGLVSTGYVKTGEQLGDILTKVI 87
            KIQ+GLVSTGYVKTGEQLGDILTK +
Sbjct: 1268 KIQDGLVSTGYVKTGEQLGDILTKAL 1293

[Close]
BLAST of Cla97C09G176465 vs. NCBI nr
Match: XP_031744756.1 (uncharacterized protein LOC101212255 isoform X4 [Cucumis sativus] >XP_031744757.1 uncharacterized protein LOC101212255 isoform X4 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 8.3e-32
Identity = 70/86 (81.40%), Postives = 79/86 (91.86%), Query Frame = 0 

Query: 1    MAQSMCKIVWIHQLLSEMGFNVVMPAKLWWDNKATRHIASNLVFHERTKHIEVDYHFIRE 60
            MAQS+C+IVWIHQLLSE+GF++ +PAKLW DN+A  HIASN VFHERTKHIEVD HFIRE
Sbjct: 1070 MAQSVCEIVWIHQLLSEIGFSITVPAKLWCDNQAALHIASNPVFHERTKHIEVDCHFIRE 1129

Query: 61   KIQEGLVSTGYVKTGEQLGDILTKVI 87
            KIQ+GLVSTGYVKTGEQLGDILTK +
Sbjct: 1130 KIQDGLVSTGYVKTGEQLGDILTKAL 1155

[Close]
BLAST of Cla97C09G176465 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 6.9e-13
Identity = 34/84 (40.48%), Postives = 52/84 (61.90%), Query Frame = 0 

Query: 1    MAQSMCKIVWIHQLLSEMGFNVVMPAKLWWDNKATRHIASNLVFHERTKHIEVDYHFIRE 60
            +A +  ++ WI  LL+E+G  +  P  ++ DN    ++ +N VFH R KHI +DYHFIR 
Sbjct: 1361 VANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRN 1420

Query: 61   KIQEGLVSTGYVKTGEQLGDILTK 85
            ++Q G +   +V T +QL D LTK
Sbjct: 1421 QVQSGALRVVHVSTHDQLADTLTK 1444

[Close]
BLAST of Cla97C09G176465 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.0e-12
Identity = 34/84 (40.48%), Postives = 52/84 (61.90%), Query Frame = 0 

Query: 1    MAQSMCKIVWIHQLLSEMGFNVVMPAKLWWDNKATRHIASNLVFHERTKHIEVDYHFIRE 60
            +A +  ++ WI  LL+E+G  +  P  ++ DN    ++ +N VFH R KHI +DYHFIR 
Sbjct: 1344 VANTSSELQWICSLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRN 1403

Query: 61   KIQEGLVSTGYVKTGEQLGDILTK 85
            ++Q G +   +V T +QL D LTK
Sbjct: 1404 QVQSGALRVVHVSTHDQLADTLTK 1427

[Close]
BLAST of Cla97C09G176465 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 66.6 bits (161), Expect = 9.3e-10
Identity = 29/82 (35.37%), Postives = 50/82 (60.98%), Query Frame = 0 

Query: 3    QSMCKIVWIHQLLSEMGFNVVMPAKLWWDNKATRHIASNLVFHERTKHIEVDYHFIREKI 62
            +++ + +W+  LL+ +   +  P K++ DN+    IA+N   H+R KHI++ YHF RE++
Sbjct: 1303 EAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQV 1362

Query: 63   QEGLVSTGYVKTGEQLGDILTK 85
            Q  ++   Y+ T  QL DI TK
Sbjct: 1363 QNNVICLEYIPTENQLADIFTK 1384

[Close]
BLAST of Cla97C09G176465 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.3e-06
Identity = 25/80 (31.25%), Postives = 49/80 (61.25%), Query Frame = 0 

Query: 7    KIVWIHQLLSEMGFNVVMPAKLWWDNKATRHIASNLVFHERTKHIEVDYHFIREKIQEGL 66
            +++W+ + L E+G +      ++ D+++   ++ N ++H RTKHI+V YH+IRE + +  
Sbjct: 1233 EMIWLKRFLQELGLH-QKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDES 1292

Query: 67   VSTGYVKTGEQLGDILTKVI 87
            +    + T E   D+LTKV+
Sbjct: 1293 LKVLKISTNENPADMLTKVV 1311

[Close]
BLAST of Cla97C09G176465 vs. ExPASy TrEMBL
Match: A0A5D3CID2 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold828G00470 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.9e-30
Identity = 68/86 (79.07%), Postives = 77/86 (89.53%), Query Frame = 0 

Query: 1   MAQSMCKIVWIHQLLSEMGFNVVMPAKLWWDNKATRHIASNLVFHERTKHIEVDYHFIRE 60
           M QS+C+IVWIHQLLSE+GF++ +PAKL  DN+A  HIASN VFHERTKHIEVD HFIRE
Sbjct: 751 MTQSVCEIVWIHQLLSEIGFSITVPAKLQCDNQAALHIASNPVFHERTKHIEVDCHFIRE 810

Query: 61  KIQEGLVSTGYVKTGEQLGDILTKVI 87
           KIQ+GLVSTGYVKTGEQLGDILTK +
Sbjct: 811 KIQDGLVSTGYVKTGEQLGDILTKAV 836

[Close]
BLAST of Cla97C09G176465 vs. ExPASy TrEMBL
Match: A0A5A7UHS1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00150 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.8e-30
Identity = 66/84 (78.57%), Postives = 76/84 (90.48%), Query Frame = 0 

Query: 1   MAQSMCKIVWIHQLLSEMGFNVVMPAKLWWDNKATRHIASNLVFHERTKHIEVDYHFIRE 60
           MAQS+C+IVWIHQLLSE+GF++ +P KLW DN+   HIASN VFHE+TKHIEVD HFIRE
Sbjct: 561 MAQSVCEIVWIHQLLSEIGFSITVPVKLWCDNQVALHIASNPVFHEQTKHIEVDCHFIRE 620

Query: 61  KIQEGLVSTGYVKTGEQLGDILTK 85
           KIQ+GL+STGYVKTGEQLGDILTK
Sbjct: 621 KIQDGLMSTGYVKTGEQLGDILTK 644

[Close]
BLAST of Cla97C09G176465 vs. ExPASy TrEMBL
Match: A0A5D3DZU1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2277G00150 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.8e-30
Identity = 66/84 (78.57%), Postives = 76/84 (90.48%), Query Frame = 0 

Query: 1   MAQSMCKIVWIHQLLSEMGFNVVMPAKLWWDNKATRHIASNLVFHERTKHIEVDYHFIRE 60
           MAQS+C+IVWIHQLLSE+GF++ +P KLW DN+   HIASN VFHE+TKHIEVD HFIRE
Sbjct: 561 MAQSVCEIVWIHQLLSEIGFSITVPVKLWCDNQVALHIASNPVFHEQTKHIEVDCHFIRE 620

Query: 61  KIQEGLVSTGYVKTGEQLGDILTK 85
           KIQ+GL+STGYVKTGEQLGDILTK
Sbjct: 621 KIQDGLMSTGYVKTGEQLGDILTK 644

[Close]
BLAST of Cla97C09G176465 vs. ExPASy TrEMBL
Match: A0A5A7VI02 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G00760 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.1e-29
Identity = 66/86 (76.74%), Postives = 74/86 (86.05%), Query Frame = 0 

Query: 1   MAQSMCKIVWIHQLLSEMGFNVVMPAKLWWDNKATRHIASNLVFHERTKHIEVDYHFIRE 60
           MAQS+C+IVWIHQLLSE+GF++ +PAKLW DN+   HI SNLVFHERTKHIEVD HFI  
Sbjct: 112 MAQSVCEIVWIHQLLSEIGFSITVPAKLWCDNQVALHITSNLVFHERTKHIEVDCHFIHV 171

Query: 61  KIQEGLVSTGYVKTGEQLGDILTKVI 87
           KIQ+GLVSTGYVK GEQLGD LTK I
Sbjct: 172 KIQDGLVSTGYVKIGEQLGDFLTKAI 197

[Close]
BLAST of Cla97C09G176465 vs. ExPASy TrEMBL
Match: A0A438HK19 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_662 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.4e-29
Identity = 64/86 (74.42%), Postives = 73/86 (84.88%), Query Frame = 0 

Query: 1   MAQSMCKIVWIHQLLSEMGFNVVMPAKLWWDNKATRHIASNLVFHERTKHIEVDYHFIRE 60
           MAQ+ C+I+WIHQLL E+G    MPAKLW DN+   HIA+NLV+HERTKHIEVDYHFIRE
Sbjct: 600 MAQATCEIIWIHQLLCEVGMKCAMPAKLWCDNQVALHIAANLVYHERTKHIEVDYHFIRE 659

Query: 61  KIQEGLVSTGYVKTGEQLGDILTKVI 87
           KI+E LVSTGYVKTGEQLGDI TK +
Sbjct: 660 KIEENLVSTGYVKTGEQLGDIFTKAL 685

[Close]
BLAST of Cla97C09G176465 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 59.3 bits (142), Expect = 1.1e-08
Identity = 30/74 (40.54%), Postives = 44/74 (59.46%), Query Frame = 0 

Query: 7   KIVWIHQLLSEMGFNVVMPAKLWWDNKATRHIASNLVFHERTKHIEVDYHFIREK-IQEG 66
           +++W+ Q   E+   +  P  L+ DN A  HIA+N VFHERTKHIE D H +RE+ + + 
Sbjct: 500 EMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRERSVYQA 559

Query: 67  LVSTGYVKTGEQLG 80
            +S  +    EQ G
Sbjct: 560 TLSYSFQAYDEQDG 573

The following BLAST results are available for this feature:
BLAST of Cla97C09G176465 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031744754.18.3e-3281.40uncharacterized protein LOC101212255 isoform X2 [Cucumis sativus][more]
XP_031744758.18.3e-3281.40uncharacterized protein LOC101212255 isoform X5 [Cucumis sativus][more]
XP_031744753.18.3e-3281.40uncharacterized protein LOC101212255 isoform X1 [Cucumis sativus][more]
XP_031744755.18.3e-3281.40uncharacterized protein LOC101212255 isoform X3 [Cucumis sativus][more]
XP_031744756.18.3e-3281.40uncharacterized protein LOC101212255 isoform X4 [Cucumis sativus] >XP_031744757.... [more]
BLAST of Cla97C09G176465 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q94HW26.9e-1340.48Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT942.0e-1240.48Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
P041469.3e-1035.37Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
P109781.3e-0631.25Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
BLAST of Cla97C09G176465 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CID22.9e-3079.07Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5A7UHS13.8e-3078.57Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5D3DZU13.8e-3078.57Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5A7VI021.1e-2976.74Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A438HK191.4e-2974.42Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976... [more]
BLAST of Cla97C09G176465 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G23160.11.1e-0840.54cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 491..521
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 443..463
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 308..331
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 416..521
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 11..84
NoneNo IPR availablePANTHERPTHR11439:SF343SUBFAMILY NOT NAMEDcoord: 11..84
NoneNo IPR availableCDDcd09272RNase_HI_RT_Ty1coord: 1..84
e-value: 1.10588E-35
score: 127.97

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C09G176465.1Cla97C09G176465.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding