Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCAAGAGGCTGATAAGCATAGTTGGGATGTTCAATTTGATGTCAGTGATCTAGTTTATTTGAAGTTTTGCCCGTATCGCTTATTGTCTTTGGTTCACCGACGCAATAAAAAGTTGGCTCCCAAATATTTTGGTCCTTTTTGCATTCTGCAATGTGTTCACCCCATCGCGTACAAGTTGGACTTTCCTCCTTCAGCCCAAATACATCCAGTTTTTCATGTTTCTCAGCTCAAGAAGGCTATTGGCAATGGGGTGACCTCCTATTCTTTAACTTCCCAATTATCTTCTAATTTTGAGTGGGAGCTTCAACCTTCTTCTGTTTTGGGAATTCGCCAACATTCTACTACTGGCACAGGGGATGTCCTTGTTCATTGGAAGGATTTACCAGATTGA
mRNA sequence
ATGAAGCAAGAGGCTGATAAGCATAGTTGGGATGTTCAATTTGATGTCAGTGATCTAGTTTATTTGAAGTTTTGCCCGTATCGCTTATTGTCTTTGGTTCACCGACGCAATAAAAAGTTGGCTCCCAAATATTTTGGTCCTTTTTGCATTCTGCAATGTGTTCACCCCATCGCGTACAAGTTGGACTTTCCTCCTTCAGCCCAAATACATCCAGTTTTTCATGTTTCTCAGCTCAAGAAGGCTATTGGCAATGGGGTGACCTCCTATTCTTTAACTTCCCAATTATCTTCTAATTTTGAGTGGGAGCTTCAACCTTCTTCTGTTTTGGGAATTCGCCAACATTCTACTACTGGCACAGGGGATGTCCTTGTTCATTGGAAGGATTTACCAGATTGA
Coding sequence (CDS)
ATGAAGCAAGAGGCTGATAAGCATAGTTGGGATGTTCAATTTGATGTCAGTGATCTAGTTTATTTGAAGTTTTGCCCGTATCGCTTATTGTCTTTGGTTCACCGACGCAATAAAAAGTTGGCTCCCAAATATTTTGGTCCTTTTTGCATTCTGCAATGTGTTCACCCCATCGCGTACAAGTTGGACTTTCCTCCTTCAGCCCAAATACATCCAGTTTTTCATGTTTCTCAGCTCAAGAAGGCTATTGGCAATGGGGTGACCTCCTATTCTTTAACTTCCCAATTATCTTCTAATTTTGAGTGGGAGCTTCAACCTTCTTCTGTTTTGGGAATTCGCCAACATTCTACTACTGGCACAGGGGATGTCCTTGTTCATTGGAAGGATTTACCAGATTGA
Protein sequence
MKQEADKHSWDVQFDVSDLVYLKFCPYRLLSLVHRRNKKLAPKYFGPFCILQCVHPIAYKLDFPPSAQIHPVFHVSQLKKAIGNGVTSYSLTSQLSSNFEWELQPSSVLGIRQHSTTGTGDVLVHWKDLPD
Homology
BLAST of Cla97C09G176117 vs. NCBI nr
Match:
KAA0037196.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 142.1 bits (357), Expect = 3.4e-30
Identity = 64/130 (49.23%), Postives = 88/130 (67.69%), Query Frame = 0
Query: 1 MKQEADKHSWDVQFDVSDLVYLKFCPYRLLSLVHRRNKKLAPKYFGPFCILQCVHPIAYK 60
MK++AD +V+F D+V+LK PYR S+ +RN+KL+PKYFGP+ +L+ + +AYK
Sbjct: 1468 MKKQADSKRREVEFQEGDMVFLKLRPYRQASIRKKRNEKLSPKYFGPYRVLERIGKVAYK 1527
Query: 61 LDFPPSAQIHPVFHVSQLKKAIGNGVTSYSLTSQLSSNFEWELQPSSVLGIRQHSTTGTG 120
L+ P A IHPVFHVSQLKKA+G G T +SL ++ N EW QP V G R++ TT
Sbjct: 1528 LELPAEAAIHPVFHVSQLKKAVGRGETVHSLNPYMNENHEWITQPEEVYGYRKNPTTREW 1587
Query: 121 DVLVHWKDLP 131
+ L+ WK LP
Sbjct: 1588 EALISWKGLP 1597
BLAST of Cla97C09G176117 vs. NCBI nr
Match:
TYK13876.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 142.1 bits (357), Expect = 3.4e-30
Identity = 64/130 (49.23%), Postives = 88/130 (67.69%), Query Frame = 0
Query: 1 MKQEADKHSWDVQFDVSDLVYLKFCPYRLLSLVHRRNKKLAPKYFGPFCILQCVHPIAYK 60
MK++AD +V+F D+V+LK PYR S+ +RN+KL+PKYFGP+ +L+ + +AYK
Sbjct: 1468 MKKQADSKRREVEFQEGDMVFLKLRPYRQASIRKKRNEKLSPKYFGPYRVLERIGKVAYK 1527
Query: 61 LDFPPSAQIHPVFHVSQLKKAIGNGVTSYSLTSQLSSNFEWELQPSSVLGIRQHSTTGTG 120
L+ P A IHPVFHVSQLKKA+G G T +SL ++ N EW QP V G R++ TT
Sbjct: 1528 LELPAEAAIHPVFHVSQLKKAVGRGETVHSLNPYMNENHEWITQPEEVYGYRKNPTTREW 1587
Query: 121 DVLVHWKDLP 131
+ L+ WK LP
Sbjct: 1588 EALISWKGLP 1597
BLAST of Cla97C09G176117 vs. NCBI nr
Match:
RVW83267.1 (Transposon Tf2-12 polyprotein [Vitis vinifera])
HSP 1 Score: 141.7 bits (356), Expect = 4.4e-30
Identity = 65/132 (49.24%), Postives = 90/132 (68.18%), Query Frame = 0
Query: 1 MKQEADKHSWDVQFDVSDLVYLKFCPYRLLSLVHRRNKKLAPKYFGPFCILQCVHPIAYK 60
M+ AD H VQF+V D VY+K CPYRL SL R N+KL+P+YFGP+ ++Q + P+AY+
Sbjct: 611 MRSSADAHRRAVQFEVGDFVYIKLCPYRLRSLAKRPNEKLSPRYFGPYKVVQQIGPVAYR 670
Query: 61 LDFPPSAQIHPVFHVSQLKKAIGNGVTSYSLTSQLSSNFEWELQPSSVLGIRQHSTTG-- 120
L+ P S IHPVFHVSQLK+A+G+ V L+ L+ + EW ++P VL IR+ S
Sbjct: 671 LELPSSTTIHPVFHVSQLKRALGSAVLCQPLSPILAEDLEWLVEPDQVLDIRKSSNNNQL 730
Query: 121 TGDVLVHWKDLP 131
+ +VL+ WK LP
Sbjct: 731 SIEVLIQWKGLP 742
BLAST of Cla97C09G176117 vs. NCBI nr
Match:
PKU61033.1 (hypothetical protein MA16_Dca029063 [Dendrobium catenatum])
HSP 1 Score: 141.0 bits (354), Expect = 7.5e-30
Identity = 64/131 (48.85%), Postives = 95/131 (72.52%), Query Frame = 0
Query: 1 MKQEADKHSWDVQFDVSDLVYLKFCPYRLLSLVHRRNKKLAPKYFGPFCILQCVHPIAYK 60
MK++AD H D+QF+V + VYLK PYR ++ +RRN+KL+P+YFGP+ +L+ + +AY+
Sbjct: 1 MKRQADGHRRDIQFEVGEKVYLKLRPYRQKTVANRRNEKLSPRYFGPYEVLERIGAVAYR 60
Query: 61 LDFPPSAQIHPVFHVSQLKKAIGNGVTSYSLTSQLSSNFEWELQPSSVLGIRQHSTTGTG 120
L PP+A IHPVFHVSQL+KAIG+ + L + L+ + E L+P ++G+RQ GT
Sbjct: 61 LKLPPTATIHPVFHVSQLRKAIGDYTANPELPATLTEDLEVVLEPLELMGVRQ-KEEGTK 120
Query: 121 DVLVHWKDLPD 132
+VL+ WK+LPD
Sbjct: 121 EVLIQWKNLPD 130
BLAST of Cla97C09G176117 vs. NCBI nr
Match:
KAA0050511.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 140.2 bits (352), Expect = 1.3e-29
Identity = 63/130 (48.46%), Postives = 88/130 (67.69%), Query Frame = 0
Query: 1 MKQEADKHSWDVQFDVSDLVYLKFCPYRLLSLVHRRNKKLAPKYFGPFCILQCVHPIAYK 60
MK++AD +V+F D+V+LK PYR S+ +RN+KL+PKYFGP+ +L+ + +AY+
Sbjct: 1470 MKKQADSKRREVEFQEGDMVFLKLRPYRQASIRKKRNEKLSPKYFGPYRVLERIGKVAYR 1529
Query: 61 LDFPPSAQIHPVFHVSQLKKAIGNGVTSYSLTSQLSSNFEWELQPSSVLGIRQHSTTGTG 120
L+ P A IHPVFHVSQLKKA+G G T SLT ++ N EW QP V G R++ +T
Sbjct: 1530 LELPAEAAIHPVFHVSQLKKAVGRGETVQSLTPYINENHEWITQPEEVYGYRKNPSTREW 1589
Query: 121 DVLVHWKDLP 131
+ L+ WK LP
Sbjct: 1590 EALISWKGLP 1599
BLAST of Cla97C09G176117 vs. ExPASy TrEMBL
Match:
A0A5D3CU05 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G00630 PE=4 SV=1)
HSP 1 Score: 142.1 bits (357), Expect = 1.6e-30
Identity = 64/130 (49.23%), Postives = 88/130 (67.69%), Query Frame = 0
Query: 1 MKQEADKHSWDVQFDVSDLVYLKFCPYRLLSLVHRRNKKLAPKYFGPFCILQCVHPIAYK 60
MK++AD +V+F D+V+LK PYR S+ +RN+KL+PKYFGP+ +L+ + +AYK
Sbjct: 1468 MKKQADSKRREVEFQEGDMVFLKLRPYRQASIRKKRNEKLSPKYFGPYRVLERIGKVAYK 1527
Query: 61 LDFPPSAQIHPVFHVSQLKKAIGNGVTSYSLTSQLSSNFEWELQPSSVLGIRQHSTTGTG 120
L+ P A IHPVFHVSQLKKA+G G T +SL ++ N EW QP V G R++ TT
Sbjct: 1528 LELPAEAAIHPVFHVSQLKKAVGRGETVHSLNPYMNENHEWITQPEEVYGYRKNPTTREW 1587
Query: 121 DVLVHWKDLP 131
+ L+ WK LP
Sbjct: 1588 EALISWKGLP 1597
BLAST of Cla97C09G176117 vs. ExPASy TrEMBL
Match:
A0A5A7T4Y0 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold379G001090 PE=4 SV=1)
HSP 1 Score: 142.1 bits (357), Expect = 1.6e-30
Identity = 64/130 (49.23%), Postives = 88/130 (67.69%), Query Frame = 0
Query: 1 MKQEADKHSWDVQFDVSDLVYLKFCPYRLLSLVHRRNKKLAPKYFGPFCILQCVHPIAYK 60
MK++AD +V+F D+V+LK PYR S+ +RN+KL+PKYFGP+ +L+ + +AYK
Sbjct: 1468 MKKQADSKRREVEFQEGDMVFLKLRPYRQASIRKKRNEKLSPKYFGPYRVLERIGKVAYK 1527
Query: 61 LDFPPSAQIHPVFHVSQLKKAIGNGVTSYSLTSQLSSNFEWELQPSSVLGIRQHSTTGTG 120
L+ P A IHPVFHVSQLKKA+G G T +SL ++ N EW QP V G R++ TT
Sbjct: 1528 LELPAEAAIHPVFHVSQLKKAVGRGETVHSLNPYMNENHEWITQPEEVYGYRKNPTTREW 1587
Query: 121 DVLVHWKDLP 131
+ L+ WK LP
Sbjct: 1588 EALISWKGLP 1597
BLAST of Cla97C09G176117 vs. ExPASy TrEMBL
Match:
A0A438HFP2 (Transposon Tf2-12 polyprotein OS=Vitis vinifera OX=29760 GN=Tf2-12_103 PE=4 SV=1)
HSP 1 Score: 141.7 bits (356), Expect = 2.1e-30
Identity = 65/132 (49.24%), Postives = 90/132 (68.18%), Query Frame = 0
Query: 1 MKQEADKHSWDVQFDVSDLVYLKFCPYRLLSLVHRRNKKLAPKYFGPFCILQCVHPIAYK 60
M+ AD H VQF+V D VY+K CPYRL SL R N+KL+P+YFGP+ ++Q + P+AY+
Sbjct: 611 MRSSADAHRRAVQFEVGDFVYIKLCPYRLRSLAKRPNEKLSPRYFGPYKVVQQIGPVAYR 670
Query: 61 LDFPPSAQIHPVFHVSQLKKAIGNGVTSYSLTSQLSSNFEWELQPSSVLGIRQHSTTG-- 120
L+ P S IHPVFHVSQLK+A+G+ V L+ L+ + EW ++P VL IR+ S
Sbjct: 671 LELPSSTTIHPVFHVSQLKRALGSAVLCQPLSPILAEDLEWLVEPDQVLDIRKSSNNNQL 730
Query: 121 TGDVLVHWKDLP 131
+ +VL+ WK LP
Sbjct: 731 SIEVLIQWKGLP 742
BLAST of Cla97C09G176117 vs. ExPASy TrEMBL
Match:
A0A2I0VCA0 (Chromo domain-containing protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca029063 PE=4 SV=1)
HSP 1 Score: 141.0 bits (354), Expect = 3.6e-30
Identity = 64/131 (48.85%), Postives = 95/131 (72.52%), Query Frame = 0
Query: 1 MKQEADKHSWDVQFDVSDLVYLKFCPYRLLSLVHRRNKKLAPKYFGPFCILQCVHPIAYK 60
MK++AD H D+QF+V + VYLK PYR ++ +RRN+KL+P+YFGP+ +L+ + +AY+
Sbjct: 1 MKRQADGHRRDIQFEVGEKVYLKLRPYRQKTVANRRNEKLSPRYFGPYEVLERIGAVAYR 60
Query: 61 LDFPPSAQIHPVFHVSQLKKAIGNGVTSYSLTSQLSSNFEWELQPSSVLGIRQHSTTGTG 120
L PP+A IHPVFHVSQL+KAIG+ + L + L+ + E L+P ++G+RQ GT
Sbjct: 61 LKLPPTATIHPVFHVSQLRKAIGDYTANPELPATLTEDLEVVLEPLELMGVRQ-KEEGTK 120
Query: 121 DVLVHWKDLPD 132
+VL+ WK+LPD
Sbjct: 121 EVLIQWKNLPD 130
BLAST of Cla97C09G176117 vs. ExPASy TrEMBL
Match:
A0A5D3DM31 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002040 PE=4 SV=1)
HSP 1 Score: 140.2 bits (352), Expect = 6.2e-30
Identity = 63/130 (48.46%), Postives = 88/130 (67.69%), Query Frame = 0
Query: 1 MKQEADKHSWDVQFDVSDLVYLKFCPYRLLSLVHRRNKKLAPKYFGPFCILQCVHPIAYK 60
MK++AD +V+F D+V+LK PYR S+ +RN+KL+PKYFGP+ +L+ + +AY+
Sbjct: 79 MKKQADSKRREVEFQEGDMVFLKLRPYRQASIRKKRNEKLSPKYFGPYRVLERIGKVAYR 138
Query: 61 LDFPPSAQIHPVFHVSQLKKAIGNGVTSYSLTSQLSSNFEWELQPSSVLGIRQHSTTGTG 120
L+ P A IHPVFHVSQLKKA+G G T SLT ++ N EW QP V G R++ +T
Sbjct: 139 LELPAEAAIHPVFHVSQLKKAVGRGETVQSLTPYINENHEWITQPEEVYGYRKNPSTREW 198
Query: 121 DVLVHWKDLP 131
+ L+ WK LP
Sbjct: 199 EALISWKGLP 208
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0037196.1 | 3.4e-30 | 49.23 | Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
TYK13876.1 | 3.4e-30 | 49.23 | Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
RVW83267.1 | 4.4e-30 | 49.24 | Transposon Tf2-12 polyprotein [Vitis vinifera] | [more] |
PKU61033.1 | 7.5e-30 | 48.85 | hypothetical protein MA16_Dca029063 [Dendrobium catenatum] | [more] |
KAA0050511.1 | 1.3e-29 | 48.46 | Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3CU05 | 1.6e-30 | 49.23 | Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
A0A5A7T4Y0 | 1.6e-30 | 49.23 | Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
A0A438HFP2 | 2.1e-30 | 49.24 | Transposon Tf2-12 polyprotein OS=Vitis vinifera OX=29760 GN=Tf2-12_103 PE=4 SV=1 | [more] |
A0A2I0VCA0 | 3.6e-30 | 48.85 | Chromo domain-containing protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca02... | [more] |
A0A5D3DM31 | 6.2e-30 | 48.46 | Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
Match Name | E-value | Identity | Description | |