Cla97C09G176117 (gene) Watermelon (97103) v2.5

Overview
NameCla97C09G176117
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionTy3/gypsy retrotransposon protein
LocationCla97Chr09: 19160215 .. 19160610 (+)
RNA-Seq ExpressionCla97C09G176117
SyntenyCla97C09G176117
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCAAGAGGCTGATAAGCATAGTTGGGATGTTCAATTTGATGTCAGTGATCTAGTTTATTTGAAGTTTTGCCCGTATCGCTTATTGTCTTTGGTTCACCGACGCAATAAAAAGTTGGCTCCCAAATATTTTGGTCCTTTTTGCATTCTGCAATGTGTTCACCCCATCGCGTACAAGTTGGACTTTCCTCCTTCAGCCCAAATACATCCAGTTTTTCATGTTTCTCAGCTCAAGAAGGCTATTGGCAATGGGGTGACCTCCTATTCTTTAACTTCCCAATTATCTTCTAATTTTGAGTGGGAGCTTCAACCTTCTTCTGTTTTGGGAATTCGCCAACATTCTACTACTGGCACAGGGGATGTCCTTGTTCATTGGAAGGATTTACCAGATTGA

mRNA sequence

ATGAAGCAAGAGGCTGATAAGCATAGTTGGGATGTTCAATTTGATGTCAGTGATCTAGTTTATTTGAAGTTTTGCCCGTATCGCTTATTGTCTTTGGTTCACCGACGCAATAAAAAGTTGGCTCCCAAATATTTTGGTCCTTTTTGCATTCTGCAATGTGTTCACCCCATCGCGTACAAGTTGGACTTTCCTCCTTCAGCCCAAATACATCCAGTTTTTCATGTTTCTCAGCTCAAGAAGGCTATTGGCAATGGGGTGACCTCCTATTCTTTAACTTCCCAATTATCTTCTAATTTTGAGTGGGAGCTTCAACCTTCTTCTGTTTTGGGAATTCGCCAACATTCTACTACTGGCACAGGGGATGTCCTTGTTCATTGGAAGGATTTACCAGATTGA

Coding sequence (CDS)

ATGAAGCAAGAGGCTGATAAGCATAGTTGGGATGTTCAATTTGATGTCAGTGATCTAGTTTATTTGAAGTTTTGCCCGTATCGCTTATTGTCTTTGGTTCACCGACGCAATAAAAAGTTGGCTCCCAAATATTTTGGTCCTTTTTGCATTCTGCAATGTGTTCACCCCATCGCGTACAAGTTGGACTTTCCTCCTTCAGCCCAAATACATCCAGTTTTTCATGTTTCTCAGCTCAAGAAGGCTATTGGCAATGGGGTGACCTCCTATTCTTTAACTTCCCAATTATCTTCTAATTTTGAGTGGGAGCTTCAACCTTCTTCTGTTTTGGGAATTCGCCAACATTCTACTACTGGCACAGGGGATGTCCTTGTTCATTGGAAGGATTTACCAGATTGA

Protein sequence

MKQEADKHSWDVQFDVSDLVYLKFCPYRLLSLVHRRNKKLAPKYFGPFCILQCVHPIAYKLDFPPSAQIHPVFHVSQLKKAIGNGVTSYSLTSQLSSNFEWELQPSSVLGIRQHSTTGTGDVLVHWKDLPD
Homology
BLAST of Cla97C09G176117 vs. NCBI nr
Match: KAA0037196.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 142.1 bits (357), Expect = 3.4e-30
Identity = 64/130 (49.23%), Postives = 88/130 (67.69%), Query Frame = 0

Query: 1    MKQEADKHSWDVQFDVSDLVYLKFCPYRLLSLVHRRNKKLAPKYFGPFCILQCVHPIAYK 60
            MK++AD    +V+F   D+V+LK  PYR  S+  +RN+KL+PKYFGP+ +L+ +  +AYK
Sbjct: 1468 MKKQADSKRREVEFQEGDMVFLKLRPYRQASIRKKRNEKLSPKYFGPYRVLERIGKVAYK 1527

Query: 61   LDFPPSAQIHPVFHVSQLKKAIGNGVTSYSLTSQLSSNFEWELQPSSVLGIRQHSTTGTG 120
            L+ P  A IHPVFHVSQLKKA+G G T +SL   ++ N EW  QP  V G R++ TT   
Sbjct: 1528 LELPAEAAIHPVFHVSQLKKAVGRGETVHSLNPYMNENHEWITQPEEVYGYRKNPTTREW 1587

Query: 121  DVLVHWKDLP 131
            + L+ WK LP
Sbjct: 1588 EALISWKGLP 1597

BLAST of Cla97C09G176117 vs. NCBI nr
Match: TYK13876.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 142.1 bits (357), Expect = 3.4e-30
Identity = 64/130 (49.23%), Postives = 88/130 (67.69%), Query Frame = 0

Query: 1    MKQEADKHSWDVQFDVSDLVYLKFCPYRLLSLVHRRNKKLAPKYFGPFCILQCVHPIAYK 60
            MK++AD    +V+F   D+V+LK  PYR  S+  +RN+KL+PKYFGP+ +L+ +  +AYK
Sbjct: 1468 MKKQADSKRREVEFQEGDMVFLKLRPYRQASIRKKRNEKLSPKYFGPYRVLERIGKVAYK 1527

Query: 61   LDFPPSAQIHPVFHVSQLKKAIGNGVTSYSLTSQLSSNFEWELQPSSVLGIRQHSTTGTG 120
            L+ P  A IHPVFHVSQLKKA+G G T +SL   ++ N EW  QP  V G R++ TT   
Sbjct: 1528 LELPAEAAIHPVFHVSQLKKAVGRGETVHSLNPYMNENHEWITQPEEVYGYRKNPTTREW 1587

Query: 121  DVLVHWKDLP 131
            + L+ WK LP
Sbjct: 1588 EALISWKGLP 1597

BLAST of Cla97C09G176117 vs. NCBI nr
Match: RVW83267.1 (Transposon Tf2-12 polyprotein [Vitis vinifera])

HSP 1 Score: 141.7 bits (356), Expect = 4.4e-30
Identity = 65/132 (49.24%), Postives = 90/132 (68.18%), Query Frame = 0

Query: 1   MKQEADKHSWDVQFDVSDLVYLKFCPYRLLSLVHRRNKKLAPKYFGPFCILQCVHPIAYK 60
           M+  AD H   VQF+V D VY+K CPYRL SL  R N+KL+P+YFGP+ ++Q + P+AY+
Sbjct: 611 MRSSADAHRRAVQFEVGDFVYIKLCPYRLRSLAKRPNEKLSPRYFGPYKVVQQIGPVAYR 670

Query: 61  LDFPPSAQIHPVFHVSQLKKAIGNGVTSYSLTSQLSSNFEWELQPSSVLGIRQHSTTG-- 120
           L+ P S  IHPVFHVSQLK+A+G+ V    L+  L+ + EW ++P  VL IR+ S     
Sbjct: 671 LELPSSTTIHPVFHVSQLKRALGSAVLCQPLSPILAEDLEWLVEPDQVLDIRKSSNNNQL 730

Query: 121 TGDVLVHWKDLP 131
           + +VL+ WK LP
Sbjct: 731 SIEVLIQWKGLP 742

BLAST of Cla97C09G176117 vs. NCBI nr
Match: PKU61033.1 (hypothetical protein MA16_Dca029063 [Dendrobium catenatum])

HSP 1 Score: 141.0 bits (354), Expect = 7.5e-30
Identity = 64/131 (48.85%), Postives = 95/131 (72.52%), Query Frame = 0

Query: 1   MKQEADKHSWDVQFDVSDLVYLKFCPYRLLSLVHRRNKKLAPKYFGPFCILQCVHPIAYK 60
           MK++AD H  D+QF+V + VYLK  PYR  ++ +RRN+KL+P+YFGP+ +L+ +  +AY+
Sbjct: 1   MKRQADGHRRDIQFEVGEKVYLKLRPYRQKTVANRRNEKLSPRYFGPYEVLERIGAVAYR 60

Query: 61  LDFPPSAQIHPVFHVSQLKKAIGNGVTSYSLTSQLSSNFEWELQPSSVLGIRQHSTTGTG 120
           L  PP+A IHPVFHVSQL+KAIG+   +  L + L+ + E  L+P  ++G+RQ    GT 
Sbjct: 61  LKLPPTATIHPVFHVSQLRKAIGDYTANPELPATLTEDLEVVLEPLELMGVRQ-KEEGTK 120

Query: 121 DVLVHWKDLPD 132
           +VL+ WK+LPD
Sbjct: 121 EVLIQWKNLPD 130

BLAST of Cla97C09G176117 vs. NCBI nr
Match: KAA0050511.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 140.2 bits (352), Expect = 1.3e-29
Identity = 63/130 (48.46%), Postives = 88/130 (67.69%), Query Frame = 0

Query: 1    MKQEADKHSWDVQFDVSDLVYLKFCPYRLLSLVHRRNKKLAPKYFGPFCILQCVHPIAYK 60
            MK++AD    +V+F   D+V+LK  PYR  S+  +RN+KL+PKYFGP+ +L+ +  +AY+
Sbjct: 1470 MKKQADSKRREVEFQEGDMVFLKLRPYRQASIRKKRNEKLSPKYFGPYRVLERIGKVAYR 1529

Query: 61   LDFPPSAQIHPVFHVSQLKKAIGNGVTSYSLTSQLSSNFEWELQPSSVLGIRQHSTTGTG 120
            L+ P  A IHPVFHVSQLKKA+G G T  SLT  ++ N EW  QP  V G R++ +T   
Sbjct: 1530 LELPAEAAIHPVFHVSQLKKAVGRGETVQSLTPYINENHEWITQPEEVYGYRKNPSTREW 1589

Query: 121  DVLVHWKDLP 131
            + L+ WK LP
Sbjct: 1590 EALISWKGLP 1599

BLAST of Cla97C09G176117 vs. ExPASy TrEMBL
Match: A0A5D3CU05 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G00630 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.6e-30
Identity = 64/130 (49.23%), Postives = 88/130 (67.69%), Query Frame = 0

Query: 1    MKQEADKHSWDVQFDVSDLVYLKFCPYRLLSLVHRRNKKLAPKYFGPFCILQCVHPIAYK 60
            MK++AD    +V+F   D+V+LK  PYR  S+  +RN+KL+PKYFGP+ +L+ +  +AYK
Sbjct: 1468 MKKQADSKRREVEFQEGDMVFLKLRPYRQASIRKKRNEKLSPKYFGPYRVLERIGKVAYK 1527

Query: 61   LDFPPSAQIHPVFHVSQLKKAIGNGVTSYSLTSQLSSNFEWELQPSSVLGIRQHSTTGTG 120
            L+ P  A IHPVFHVSQLKKA+G G T +SL   ++ N EW  QP  V G R++ TT   
Sbjct: 1528 LELPAEAAIHPVFHVSQLKKAVGRGETVHSLNPYMNENHEWITQPEEVYGYRKNPTTREW 1587

Query: 121  DVLVHWKDLP 131
            + L+ WK LP
Sbjct: 1588 EALISWKGLP 1597

BLAST of Cla97C09G176117 vs. ExPASy TrEMBL
Match: A0A5A7T4Y0 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold379G001090 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.6e-30
Identity = 64/130 (49.23%), Postives = 88/130 (67.69%), Query Frame = 0

Query: 1    MKQEADKHSWDVQFDVSDLVYLKFCPYRLLSLVHRRNKKLAPKYFGPFCILQCVHPIAYK 60
            MK++AD    +V+F   D+V+LK  PYR  S+  +RN+KL+PKYFGP+ +L+ +  +AYK
Sbjct: 1468 MKKQADSKRREVEFQEGDMVFLKLRPYRQASIRKKRNEKLSPKYFGPYRVLERIGKVAYK 1527

Query: 61   LDFPPSAQIHPVFHVSQLKKAIGNGVTSYSLTSQLSSNFEWELQPSSVLGIRQHSTTGTG 120
            L+ P  A IHPVFHVSQLKKA+G G T +SL   ++ N EW  QP  V G R++ TT   
Sbjct: 1528 LELPAEAAIHPVFHVSQLKKAVGRGETVHSLNPYMNENHEWITQPEEVYGYRKNPTTREW 1587

Query: 121  DVLVHWKDLP 131
            + L+ WK LP
Sbjct: 1588 EALISWKGLP 1597

BLAST of Cla97C09G176117 vs. ExPASy TrEMBL
Match: A0A438HFP2 (Transposon Tf2-12 polyprotein OS=Vitis vinifera OX=29760 GN=Tf2-12_103 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 2.1e-30
Identity = 65/132 (49.24%), Postives = 90/132 (68.18%), Query Frame = 0

Query: 1   MKQEADKHSWDVQFDVSDLVYLKFCPYRLLSLVHRRNKKLAPKYFGPFCILQCVHPIAYK 60
           M+  AD H   VQF+V D VY+K CPYRL SL  R N+KL+P+YFGP+ ++Q + P+AY+
Sbjct: 611 MRSSADAHRRAVQFEVGDFVYIKLCPYRLRSLAKRPNEKLSPRYFGPYKVVQQIGPVAYR 670

Query: 61  LDFPPSAQIHPVFHVSQLKKAIGNGVTSYSLTSQLSSNFEWELQPSSVLGIRQHSTTG-- 120
           L+ P S  IHPVFHVSQLK+A+G+ V    L+  L+ + EW ++P  VL IR+ S     
Sbjct: 671 LELPSSTTIHPVFHVSQLKRALGSAVLCQPLSPILAEDLEWLVEPDQVLDIRKSSNNNQL 730

Query: 121 TGDVLVHWKDLP 131
           + +VL+ WK LP
Sbjct: 731 SIEVLIQWKGLP 742

BLAST of Cla97C09G176117 vs. ExPASy TrEMBL
Match: A0A2I0VCA0 (Chromo domain-containing protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca029063 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 3.6e-30
Identity = 64/131 (48.85%), Postives = 95/131 (72.52%), Query Frame = 0

Query: 1   MKQEADKHSWDVQFDVSDLVYLKFCPYRLLSLVHRRNKKLAPKYFGPFCILQCVHPIAYK 60
           MK++AD H  D+QF+V + VYLK  PYR  ++ +RRN+KL+P+YFGP+ +L+ +  +AY+
Sbjct: 1   MKRQADGHRRDIQFEVGEKVYLKLRPYRQKTVANRRNEKLSPRYFGPYEVLERIGAVAYR 60

Query: 61  LDFPPSAQIHPVFHVSQLKKAIGNGVTSYSLTSQLSSNFEWELQPSSVLGIRQHSTTGTG 120
           L  PP+A IHPVFHVSQL+KAIG+   +  L + L+ + E  L+P  ++G+RQ    GT 
Sbjct: 61  LKLPPTATIHPVFHVSQLRKAIGDYTANPELPATLTEDLEVVLEPLELMGVRQ-KEEGTK 120

Query: 121 DVLVHWKDLPD 132
           +VL+ WK+LPD
Sbjct: 121 EVLIQWKNLPD 130

BLAST of Cla97C09G176117 vs. ExPASy TrEMBL
Match: A0A5D3DM31 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002040 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 6.2e-30
Identity = 63/130 (48.46%), Postives = 88/130 (67.69%), Query Frame = 0

Query: 1   MKQEADKHSWDVQFDVSDLVYLKFCPYRLLSLVHRRNKKLAPKYFGPFCILQCVHPIAYK 60
           MK++AD    +V+F   D+V+LK  PYR  S+  +RN+KL+PKYFGP+ +L+ +  +AY+
Sbjct: 79  MKKQADSKRREVEFQEGDMVFLKLRPYRQASIRKKRNEKLSPKYFGPYRVLERIGKVAYR 138

Query: 61  LDFPPSAQIHPVFHVSQLKKAIGNGVTSYSLTSQLSSNFEWELQPSSVLGIRQHSTTGTG 120
           L+ P  A IHPVFHVSQLKKA+G G T  SLT  ++ N EW  QP  V G R++ +T   
Sbjct: 139 LELPAEAAIHPVFHVSQLKKAVGRGETVQSLTPYINENHEWITQPEEVYGYRKNPSTREW 198

Query: 121 DVLVHWKDLP 131
           + L+ WK LP
Sbjct: 199 EALISWKGLP 208

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0037196.13.4e-3049.23Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
TYK13876.13.4e-3049.23Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
RVW83267.14.4e-3049.24Transposon Tf2-12 polyprotein [Vitis vinifera][more]
PKU61033.17.5e-3048.85hypothetical protein MA16_Dca029063 [Dendrobium catenatum][more]
KAA0050511.11.3e-2948.46Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CU051.6e-3049.23Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7T4Y01.6e-3049.23Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A438HFP22.1e-3049.24Transposon Tf2-12 polyprotein OS=Vitis vinifera OX=29760 GN=Tf2-12_103 PE=4 SV=1[more]
A0A2I0VCA03.6e-3048.85Chromo domain-containing protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca02... [more]
A0A5D3DM316.2e-3048.46Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46148:SF38PROTEIN NYNRIN-LIKEcoord: 1..129
NoneNo IPR availablePANTHERPTHR46148FAMILY NOT NAMEDcoord: 1..129

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C09G176117.1Cla97C09G176117.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding