Cla97C09G175780 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C09G175780
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	Gag-pro-like protein
Location	Cla97Chr09: 16399874 .. 16400245 (+)
RNA-Seq Expression	Cla97C09G175780
Synteny	Cla97C09G175780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTACTTACCCCCCTGGGTTTACTCCCCAAATGATGTCCAGCCCGCACCTGGCAGGAATGTCGTATCCTACATCATCTCCCGCACAAGATGCTAATCAGACTTTGCAGCAGACAACCCACACAAATAATCCAGTATCCACCCCAATTATGGAGAGTGATAGGAGAGTTCCAGAAGATCATGGTAGCAAAAGGAGGCTATAGTTTCTGGAAGAAAGGCTACAAGCAATTGAACGTGCAGATGTGTATGGGGAGGTTGATGCTACACAATTGTGTTTGATCTCAGATGTAGTGATCCCTCCAAAATTCAAGACTCCAGATTTTGAGAAGTATAATGGGACCACGTGCCTAAAAAGCCATCTAGTTATGTAA

mRNA sequence

ATGCCTACTTACCCCCCTGGGTTTACTCCCCAAATGATGTCCAGCCCGCACCTGGCAGGAATGTCGTATCCTACATCATCTCCCGCACAAGATGCTAATCAGACTTTGCAGCAGACAACCCACACAAATAATCCAGTATCCACCCCAATTATGGAGAGTGATAGGAGAGTTCCAGAAGATCATGATGTAGTGATCCCTCCAAAATTCAAGACTCCAGATTTTGAGAAGTATAATGGGACCACGTGCCTAAAAAGCCATCTAGTTATGTAA

Coding sequence (CDS)

ATGCCTACTTACCCCCCTGGGTTTACTCCCCAAATGATGTCCAGCCCGCACCTGGCAGGAATGTCGTATCCTACATCATCTCCCGCACAAGATGCTAATCAGACTTTGCAGCAGACAACCCACACAAATAATCCAGTATCCACCCCAATTATGGAGAGTGATAGGAGAGTTCCAGAAGATCATGATGTAGTGATCCCTCCAAAATTCAAGACTCCAGATTTTGAGAAGTATAATGGGACCACGTGCCTAAAAAGCCATCTAGTTATGTAA

Protein sequence

MPTYPPGFTPQMMSSPHLAGMSYPTSSPAQDANQTLQQTTHTNNPVSTPIMESDRRVPEDHDVVIPPKFKTPDFEKYNGTTCLKSHLVM

Homology

[Close]

BLAST of Cla97C09G175780 vs. NCBI nr
Match: KAA0046607.1 (Gag-pro-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 114.0 bits (284), Expect = 6.6e-22
Identity = 60/123 (48.78%), Postives = 70/123 (56.91%), Query Frame = 0


Query: 1   MPTYPPGFTPQMMSSPHLAGMSYPTSSPAQDANQTLQQTTHTNNPVSTPIMESDRRVPED 60
           MP YPPGFTPQ  SSP +  ++YPTS PA + N T QQ  H NNP+STPIME  +++ E+
Sbjct: 56  MPAYPPGFTPQRSSSPRMGDITYPTSFPAPNPNTTTQQAAHANNPISTPIMEGSKKISEE 115

Query: 61  H----------------------------------DVVIPPKFKTPDFEKYNGTTCLKSH 90
                                              DVVIPPKFKTPDFEKYNGT+C KSH
Sbjct: 116 QGSRRRLEFLEERLRVIEGADMYGSIDATQLCLISDVVIPPKFKTPDFEKYNGTSCPKSH 175

[Close]

BLAST of Cla97C09G175780 vs. NCBI nr
Match: KAA0065293.1 (uncharacterized protein E6C27_scaffold1023G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 110.9 bits (276), Expect = 5.6e-21
Identity = 60/123 (48.78%), Postives = 69/123 (56.10%), Query Frame = 0


Query: 1   MPTYPPGFTPQMMSSPHLAGMSYPTSSPAQDANQTLQQTTHTNNPVSTPIMESDRRVPED 60
           MPTYPPGFTPQ  SSP +   +YPTS PA + N T QQ  H NNP+ST IME  +++ E+
Sbjct: 56  MPTYPPGFTPQRSSSPRMGDRTYPTSFPAPNPNTTTQQAAHANNPISTLIMEGGKKISEE 115

Query: 61  H----------------------------------DVVIPPKFKTPDFEKYNGTTCLKSH 90
                                              DVVIPPKFKTPDFEKYNGT+C KSH
Sbjct: 116 QGSRRRLEFLEERLRVIEGADMYGSIDATQLCLISDVVIPPKFKTPDFEKYNGTSCPKSH 175

[Close]

BLAST of Cla97C09G175780 vs. NCBI nr
Match: TYK09459.1 (Gag-pro-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 107.5 bits (267), Expect = 6.2e-20
Identity = 56/98 (57.14%), Postives = 64/98 (65.31%), Query Frame = 0


Query: 1   MPTYPPGFTPQMMSSPHLAGMSYPTSSPAQDANQTLQQTTHTNNPVSTPIMESDRRVPED 60
           MP YP GFTPQ  SSP +   +YPTS P  + N T QQ  H ++P+STPI ES   + E 
Sbjct: 56  MPAYPSGFTPQRSSSPRMVDRTYPTSFPTSNPNTTTQQEAHVSDPISTPITESGADMYES 115

Query: 61  ---------HDVVIPPKFKTPDFEKYNGTTCLKSHLVM 90
                     DVVIPPKFKTP+FEKYNGTTC KSHLVM
Sbjct: 116 INATQLCLISDVVIPPKFKTPNFEKYNGTTCPKSHLVM 153

[Close]

BLAST of Cla97C09G175780 vs. NCBI nr
Match: KAA0061241.1 (uncharacterized protein E6C27_scaffold455G00760 [Cucumis melo var. makuwa])

HSP 1 Score: 107.5 bits (267), Expect = 6.2e-20
Identity = 58/123 (47.15%), Postives = 67/123 (54.47%), Query Frame = 0


Query: 1   MPTYPPGFTPQMMSSPHLAGMSYPTSSPAQDANQTLQQTTHTNNPVSTPIMESDRRVPED 60
           MP YPPGFTPQ  SSP +   +YPTS P  + N T QQ  H NNP+ST IME  +++ E+
Sbjct: 56  MPAYPPGFTPQRSSSPRMGDRTYPTSFPTPNPNTTTQQVAHANNPISTLIMEGGKKISEE 115

Query: 61  H----------------------------------DVVIPPKFKTPDFEKYNGTTCLKSH 90
                                              DVVIPPKFKTPDFEKYNGT+C KSH
Sbjct: 116 QGSRRRLEFLEERLRVIEGADMYGSIDATQLCLISDVVIPPKFKTPDFEKYNGTSCPKSH 175

[Close]

BLAST of Cla97C09G175780 vs. NCBI nr
Match: KAA0049672.1 (uncharacterized protein E6C27_scaffold76G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 107.1 bits (266), Expect = 8.1e-20
Identity = 54/89 (60.67%), Postives = 60/89 (67.42%), Query Frame = 0


Query: 1   MPTYPPGFTPQMMSSPHLAGMSYPTSSPAQDANQTLQQTTHTNNPVSTPIMESDRRVPED 60
           M  YP GFTPQ  SSP +   +YPTS P  + N T QQ  H +NP+STPI +        
Sbjct: 207 MHAYPSGFTPQRSSSPRMVDRTYPTSFPTSNPNTTTQQAAHVSNPISTPITKC------- 266

Query: 61  HDVVIPPKFKTPDFEKYNGTTCLKSHLVM 90
            DVVIPPKFKTPDFEKYNGTTC KSHLVM
Sbjct: 267 -DVVIPPKFKTPDFEKYNGTTCSKSHLVM 287

[Close]

BLAST of Cla97C09G175780 vs. ExPASy TrEMBL
Match: A0A5A7TXF2 (Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G001530 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 3.2e-22
Identity = 60/123 (48.78%), Postives = 70/123 (56.91%), Query Frame = 0


Query: 1   MPTYPPGFTPQMMSSPHLAGMSYPTSSPAQDANQTLQQTTHTNNPVSTPIMESDRRVPED 60
           MP YPPGFTPQ  SSP +  ++YPTS PA + N T QQ  H NNP+STPIME  +++ E+
Sbjct: 56  MPAYPPGFTPQRSSSPRMGDITYPTSFPAPNPNTTTQQAAHANNPISTPIMEGSKKISEE 115

Query: 61  H----------------------------------DVVIPPKFKTPDFEKYNGTTCLKSH 90
                                              DVVIPPKFKTPDFEKYNGT+C KSH
Sbjct: 116 QGSRRRLEFLEERLRVIEGADMYGSIDATQLCLISDVVIPPKFKTPDFEKYNGTSCPKSH 175

[Close]

BLAST of Cla97C09G175780 vs. ExPASy TrEMBL
Match: A0A5A7VAU5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00060 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.7e-21
Identity = 60/123 (48.78%), Postives = 69/123 (56.10%), Query Frame = 0


Query: 1   MPTYPPGFTPQMMSSPHLAGMSYPTSSPAQDANQTLQQTTHTNNPVSTPIMESDRRVPED 60
           MPTYPPGFTPQ  SSP +   +YPTS PA + N T QQ  H NNP+ST IME  +++ E+
Sbjct: 56  MPTYPPGFTPQRSSSPRMGDRTYPTSFPAPNPNTTTQQAAHANNPISTLIMEGGKKISEE 115

Query: 61  H----------------------------------DVVIPPKFKTPDFEKYNGTTCLKSH 90
                                              DVVIPPKFKTPDFEKYNGT+C KSH
Sbjct: 116 QGSRRRLEFLEERLRVIEGADMYGSIDATQLCLISDVVIPPKFKTPDFEKYNGTSCPKSH 175

[Close]

BLAST of Cla97C09G175780 vs. ExPASy TrEMBL
Match: A0A5D3CGN1 (Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G00520 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.0e-20
Identity = 56/98 (57.14%), Postives = 64/98 (65.31%), Query Frame = 0


Query: 1   MPTYPPGFTPQMMSSPHLAGMSYPTSSPAQDANQTLQQTTHTNNPVSTPIMESDRRVPED 60
           MP YP GFTPQ  SSP +   +YPTS P  + N T QQ  H ++P+STPI ES   + E 
Sbjct: 56  MPAYPSGFTPQRSSSPRMVDRTYPTSFPTSNPNTTTQQEAHVSDPISTPITESGADMYES 115

Query: 61  ---------HDVVIPPKFKTPDFEKYNGTTCLKSHLVM 90
                     DVVIPPKFKTP+FEKYNGTTC KSHLVM
Sbjct: 116 INATQLCLISDVVIPPKFKTPNFEKYNGTTCPKSHLVM 153

[Close]

BLAST of Cla97C09G175780 vs. ExPASy TrEMBL
Match: A0A5A7V681 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold455G00760 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.0e-20
Identity = 58/123 (47.15%), Postives = 67/123 (54.47%), Query Frame = 0


Query: 1   MPTYPPGFTPQMMSSPHLAGMSYPTSSPAQDANQTLQQTTHTNNPVSTPIMESDRRVPED 60
           MP YPPGFTPQ  SSP +   +YPTS P  + N T QQ  H NNP+ST IME  +++ E+
Sbjct: 56  MPAYPPGFTPQRSSSPRMGDRTYPTSFPTPNPNTTTQQVAHANNPISTLIMEGGKKISEE 115

Query: 61  H----------------------------------DVVIPPKFKTPDFEKYNGTTCLKSH 90
                                              DVVIPPKFKTPDFEKYNGT+C KSH
Sbjct: 116 QGSRRRLEFLEERLRVIEGADMYGSIDATQLCLISDVVIPPKFKTPDFEKYNGTSCPKSH 175

[Close]

BLAST of Cla97C09G175780 vs. ExPASy TrEMBL
Match: A0A5A7U1L8 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold76G00070 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.9e-20
Identity = 54/89 (60.67%), Postives = 60/89 (67.42%), Query Frame = 0


Query: 1   MPTYPPGFTPQMMSSPHLAGMSYPTSSPAQDANQTLQQTTHTNNPVSTPIMESDRRVPED 60
           M  YP GFTPQ  SSP +   +YPTS P  + N T QQ  H +NP+STPI +        
Sbjct: 207 MHAYPSGFTPQRSSSPRMVDRTYPTSFPTSNPNTTTQQAAHVSNPISTPITKC------- 266

Query: 61  HDVVIPPKFKTPDFEKYNGTTCLKSHLVM 90
            DVVIPPKFKTPDFEKYNGTTC KSHLVM
Sbjct: 267 -DVVIPPKFKTPDFEKYNGTTCSKSHLVM 287

The following BLAST results are available for this feature:

BLAST of Cla97C09G175780 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046607.1	6.6e-22	48.78	Gag-pro-like protein [Cucumis melo var. makuwa]	[more]
KAA0065293.1	5.6e-21	48.78	uncharacterized protein E6C27_scaffold1023G00060 [Cucumis melo var. makuwa]	[more]
TYK09459.1	6.2e-20	57.14	Gag-pro-like protein [Cucumis melo var. makuwa]	[more]
KAA0061241.1	6.2e-20	47.15	uncharacterized protein E6C27_scaffold455G00760 [Cucumis melo var. makuwa]	[more]
KAA0049672.1	8.1e-20	60.67	uncharacterized protein E6C27_scaffold76G00070 [Cucumis melo var. makuwa]	[more]

BLAST of Cla97C09G175780 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cla97C09G175780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TXF2	3.2e-22	48.78	Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114...	[more]
A0A5A7VAU5	2.7e-21	48.78	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CGN1	3.0e-20	57.14	Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499...	[more]
A0A5A7V681	3.0e-20	47.15	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7U1L8	3.9e-20	60.67	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of Cla97C09G175780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C09G175780.1	Cla97C09G175780.1	mRNA