Cla97C09G172155 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C09G172155
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	S-protein homolog
Location	Cla97Chr09: 8520777 .. 8521223 (+)
RNA-Seq Expression	Cla97C09G172155
Synteny	Cla97C09G172155

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGGAGAAAAGAAGCCTTTGACAGTGGTTCTCTTACTTGTGGTGGCGGCTGTGGGGGTGGTTCAGCCGTGCACATCGATTCCATTGCCATTCCCGACGTCGCAAATTCATGTGGTAAATGGGCTGAACAATGAAACCTTATTGGTGCATTGTAACTCTAAAGATGATGATTTGGGAAGTCACACTTTGACTGTCAAAGGAGAGGAATTCCATTGGACTTTTAAGGTCAACCTTTTTGGAACAACGTTGTTTTGGTGCTATCTGCAAAAACCAAATTTTAACGTATCGTTTGATTCTTTTTGGGTTGAAACCACTCACCTTTGGCTCATTTCTAGGTGTTTTGATTTAAATTGCATTTGAATTGCTAAGGATGATGGAATTTACTTGAGAAACAATCTTACTAATGTTGATGAACGTGTACATTCGTGGAACAAAATTGCTTGA

mRNA sequence

ATGTATGGAGAAAAGAAGCCTTTGACAGTGGTTCTCTTACTTGTGGTGGCGGCTGTGGGGGTGGTTCAGCCGTGCACATCGATTCCATTGCCATTCCCGACGTCGCAAATTCATGTGGTAAATGGGCTGAACAATGAAACCTTATTGGTGCATTGTAACTCTAAAGATGATGATTTGGGAAGTCACACTTTGACTGTCAAAGGAGAGGAATTCCATTGGACTTTTAAGGATGATGGAATTTACTTGAGAAACAATCTTACTAATGTTGATGAACGTGTACATTCGTGGAACAAAATTGCTTGA

Coding sequence (CDS)

ATGTATGGAGAAAAGAAGCCTTTGACAGTGGTTCTCTTACTTGTGGTGGCGGCTGTGGGGGTGGTTCAGCCGTGCACATCGATTCCATTGCCATTCCCGACGTCGCAAATTCATGTGGTAAATGGGCTGAACAATGAAACCTTATTGGTGCATTGTAACTCTAAAGATGATGATTTGGGAAGTCACACTTTGACTGTCAAAGGAGAGGAATTCCATTGGACTTTTAAGGATGATGGAATTTACTTGAGAAACAATCTTACTAATGTTGATGAACGTGTACATTCGTGGAACAAAATTGCTTGA

Protein sequence

MYGEKKPLTVVLLLVVAAVGVVQPCTSIPLPFPTSQIHVVNGLNNETLLVHCNSKDDDLGSHTLTVKGEEFHWTFKDDGIYLRNNLTNVDERVHSWNKIA

Homology

[Close]

BLAST of Cla97C09G172155 vs. NCBI nr
Match: KAA0067970.1 (uncharacterized protein E6C27_scaffold138G001560 [Cucumis melo var. makuwa])

HSP 1 Score: 137.5 bits (345), Expect = 6.3e-29
Identity = 74/147 (50.34%), Postives = 81/147 (55.10%), Query Frame = 0


Query: 1   MYGEKKPLTVVLLLVVAAVGVVQPCTSIPLPFPTSQIHVVNGLNNETLLVHCNSKDDDLG 60
           MY EK  L VV+LLV+ AV VVQPCT++PLP P  +IHVVNGLNNETLLVHC SKDDDLG
Sbjct: 1   MYEEKMNLVVVILLVLVAVAVVQPCTAVPLPLPKWRIHVVNGLNNETLLVHCKSKDDDLG 60

Query: 61  SHTLTVKGEEFHWTF--------------------------------------------- 100
            H L  KGEEF WTF                                             
Sbjct: 61  IHNLVSKGEEFQWTFKVNFFGTTLFWCYLQKPNFSVSFESFWVEKSHPWLNSRCFHNDCI 120

[Close]

BLAST of Cla97C09G172155 vs. NCBI nr
Match: XP_008461539.1 (PREDICTED: uncharacterized protein LOC103500111 [Cucumis melo])

HSP 1 Score: 120.9 bits (302), Expect = 6.1e-24
Identity = 67/147 (45.58%), Postives = 78/147 (53.06%), Query Frame = 0


Query: 1   MYGEKKPLTVVLLLVVAAVGVVQPCTSIPLPFPTSQIHVVNGLNNETLLVHCNSKDDDLG 60
           MY +   L + LLLV+ AV +VQP T++PLP P   IHVVNGL N+TL VHC SKDDDLG
Sbjct: 1   MYEKYMQLAMPLLLVLVAVVLVQPSTAVPLPLPKWHIHVVNGLRNQTLFVHCKSKDDDLG 60

Query: 61  SHTLTVKGEEFHWTF--------------------------------------------- 100
           +HTL+ KG+E  WTF                                             
Sbjct: 61  NHTLSTKGQEVQWTFKVNFFGTTLFWCYLKKPNFYVAFESFWVEKTHPWLTSRCFDKNCI 120

[Close]

BLAST of Cla97C09G172155 vs. NCBI nr
Match: XP_008462114.1 (PREDICTED: uncharacterized protein LOC103500542 [Cucumis melo])

HSP 1 Score: 115.2 bits (287), Expect = 3.3e-22
Identity = 66/139 (47.48%), Postives = 76/139 (54.68%), Query Frame = 0


Query: 8   LTVVLLLVVAAVGVVQPCTSIPLPFPTSQIHVVNGLNNETLLVHCNSKDDDLGSHTLTVK 67
           L VV LLV+ A+ VVQPCT++P+P P   IHVVNGL+NETLLVHC S+DDDLG   L VK
Sbjct: 7   LAVVPLLVLVAMVVVQPCTAVPIPHPRWHIHVVNGLSNETLLVHCKSRDDDLGIQHL-VK 66

Query: 68  GEEFHWTF-----------------------------------------------KDDGI 100
           G EFHWTF                                               KDDGI
Sbjct: 67  GAEFHWTFRVSLFGRTLFWCYLEKPNFSVSFESFWVEKHVWLNSRCYDKNCIWIAKDDGI 126

[Close]

BLAST of Cla97C09G172155 vs. NCBI nr
Match: XP_004139722.1 (S-protein homolog 1-like [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 8.2e-21
Identity = 63/138 (45.65%), Postives = 74/138 (53.62%), Query Frame = 0


Query: 10  VVLLLVVAAVGVVQPCTSIPLPFPTSQIHVVNGLNNETLLVHCNSKDDDLGSHTLTVKGE 69
           V LL+V+ A+ VVQPC ++P+P P   IHVVNGL+NETLLVHC S DDDLG   L V+G 
Sbjct: 6   VPLLVVLVAMLVVQPCMAVPIPHPRWHIHVVNGLSNETLLVHCKSGDDDLGIQHL-VRGA 65

Query: 70  EFHWTF-----------------------------------------------KDDGIYL 101
           EFHWTF                                               KDDGIYL
Sbjct: 66  EFHWTFRVSLFGRTLFWCYLEKPNFSVSFESFWVEKHVWLNSRCYDKNCIWIAKDDGIYL 125

[Close]

BLAST of Cla97C09G172155 vs. NCBI nr
Match: KAE8646232.1 (hypothetical protein Csa_016625, partial [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 3.0e-15
Identity = 56/129 (43.41%), Postives = 65/129 (50.39%), Query Frame = 0


Query: 10  VVLLLVVAAVGVVQPCTSIPLPFPTSQIHVVNGLNNETLLVHCNSKDDDLGSHTLTVKGE 69
           V LL+V+ A+ VVQPC ++P+P P   IHVVNGL+NETLLVHC S DDDLG   L V+G 
Sbjct: 40  VPLLVVLVAMLVVQPCMAVPIPHPRWHIHVVNGLSNETLLVHCKSGDDDLGIQHL-VRGA 99

Query: 70  EFHWTF-----------------------------------------------KDDGIYL 92
           EFHWTF                                               KDDGIYL
Sbjct: 100 EFHWTFRVSLFGRTLFWCYLEKPNFSVSFESFWVEKHVWLNSRCYDKNCIWIAKDDGIYL 159

[Close]

BLAST of Cla97C09G172155 vs. ExPASy TrEMBL
Match: A0A5A7VL75 (S-protein homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001560 PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 3.1e-29
Identity = 74/147 (50.34%), Postives = 81/147 (55.10%), Query Frame = 0


Query: 1   MYGEKKPLTVVLLLVVAAVGVVQPCTSIPLPFPTSQIHVVNGLNNETLLVHCNSKDDDLG 60
           MY EK  L VV+LLV+ AV VVQPCT++PLP P  +IHVVNGLNNETLLVHC SKDDDLG
Sbjct: 1   MYEEKMNLVVVILLVLVAVAVVQPCTAVPLPLPKWRIHVVNGLNNETLLVHCKSKDDDLG 60

Query: 61  SHTLTVKGEEFHWTF--------------------------------------------- 100
            H L  KGEEF WTF                                             
Sbjct: 61  IHNLVSKGEEFQWTFKVNFFGTTLFWCYLQKPNFSVSFESFWVEKSHPWLNSRCFHNDCI 120

[Close]

BLAST of Cla97C09G172155 vs. ExPASy TrEMBL
Match: A0A1S3CEQ0 (S-protein homolog OS=Cucumis melo OX=3656 GN=LOC103500111 PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 3.0e-24
Identity = 67/147 (45.58%), Postives = 78/147 (53.06%), Query Frame = 0


Query: 1   MYGEKKPLTVVLLLVVAAVGVVQPCTSIPLPFPTSQIHVVNGLNNETLLVHCNSKDDDLG 60
           MY +   L + LLLV+ AV +VQP T++PLP P   IHVVNGL N+TL VHC SKDDDLG
Sbjct: 1   MYEKYMQLAMPLLLVLVAVVLVQPSTAVPLPLPKWHIHVVNGLRNQTLFVHCKSKDDDLG 60

Query: 61  SHTLTVKGEEFHWTF--------------------------------------------- 100
           +HTL+ KG+E  WTF                                             
Sbjct: 61  NHTLSTKGQEVQWTFKVNFFGTTLFWCYLKKPNFYVAFESFWVEKTHPWLTSRCFDKNCI 120

[Close]

BLAST of Cla97C09G172155 vs. ExPASy TrEMBL
Match: A0A1S3CG89 (S-protein homolog OS=Cucumis melo OX=3656 GN=LOC103500542 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.6e-22
Identity = 66/139 (47.48%), Postives = 76/139 (54.68%), Query Frame = 0


Query: 8   LTVVLLLVVAAVGVVQPCTSIPLPFPTSQIHVVNGLNNETLLVHCNSKDDDLGSHTLTVK 67
           L VV LLV+ A+ VVQPCT++P+P P   IHVVNGL+NETLLVHC S+DDDLG   L VK
Sbjct: 7   LAVVPLLVLVAMVVVQPCTAVPIPHPRWHIHVVNGLSNETLLVHCKSRDDDLGIQHL-VK 66

Query: 68  GEEFHWTF-----------------------------------------------KDDGI 100
           G EFHWTF                                               KDDGI
Sbjct: 67  GAEFHWTFRVSLFGRTLFWCYLEKPNFSVSFESFWVEKHVWLNSRCYDKNCIWIAKDDGI 126

[Close]

BLAST of Cla97C09G172155 vs. ExPASy TrEMBL
Match: A0A6J1CPC6 (S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111013506 PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.6e-14
Identity = 55/147 (37.41%), Postives = 65/147 (44.22%), Query Frame = 0


Query: 1   MYGEKKPLTVVLLLVVAAVGVVQPCTSIPLP---FPTSQIHVVNGLNNETLLVHCNSKDD 60
           MY + + +TVV+ LV     V+Q  T+  L     P   IHVVNGL+  TL VHC SKDD
Sbjct: 1   MYHKTRSVTVVIFLVSEVFAVLQLGTAASLSSALLPKWHIHVVNGLSKVTLFVHCKSKDD 60

Query: 61  DLGSHTLTVKGEEFHWTF------------------------------------------ 97
           DLG H L  +G+EF WTF                                          
Sbjct: 61  DLGVHNLVTRGDEFQWTFQVNFWATTLYWCYLKKPNADVSFESFWVEQTHMWLQYRCTDK 120

[Close]

BLAST of Cla97C09G172155 vs. ExPASy TrEMBL
Match: A0A6J1IHQ8 (S-protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111473723 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.1e-14
Identity = 50/113 (44.25%), Postives = 59/113 (52.21%), Query Frame = 0


Query: 6   KPLTVVLLLVVAAVGVVQPCTSIPLPFPTS-QIHVVNGLNNETLLVHCNSKDDDLGSHTL 65
           K +    L  VA VG   P  ++P P P+   IHVVNGL+   LLVHC SKDDDLG H L
Sbjct: 3   KNIVAFFLFTVALVGAEVPRVALPPPGPSRYYIHVVNGLSKLGLLVHCQSKDDDLGYHRL 62

Query: 66  TVKGEEFHWTF---------------------KDDGIYLRNNLTNVDERVHSW 97
              G+++ W F                     KDDGIYLRN L NVDE +H W
Sbjct: 63  LNHGDDYQWNFKHLWLRDRCKHGTVGTCIWTAKDDGIYLRNFLANVDELIHKW 115

[Close]

BLAST of Cla97C09G172155 vs. TAIR 10
Match: AT4G16295.1 (S-protein homologue 1 )

HSP 1 Score: 43.1 bits (100), Expect = 1.5e-04
Identity = 21/47 (44.68%), Postives = 29/47 (61.70%), Query Frame = 0


Query: 36 QIHVVNGL-NNETLLVHCNSKDDDLGSHTLTVKGEEFHWTFKDDGIY 82
          Q+ VVNGL   ETL +HC SK+DDLG   L  +   F W F ++ ++
Sbjct: 42 QVTVVNGLTTGETLFIHCKSKEDDLGEINLKFR-NRFSWNFGENMLH 87

[Close]

BLAST of Cla97C09G172155 vs. TAIR 10
Match: AT2G06090.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 42.4 bits (98), Expect = 2.6e-04
Identity = 26/72 (36.11%), Postives = 42/72 (58.33%), Query Frame = 0


Query: 8  LTVVLLLVVAAVGVVQPCTSIPLPFPTSQIHVVNGL--NNETLLVHCNSKDDDLGSHTLT 67
          L V+L+++  +VG      +    +P +Q+H  N    N + L VHC SKDDDLG HT+ 
Sbjct: 4  LFVLLIIIALSVG----SNNGSKLWPKNQLHFRNSFSRNYDVLTVHCKSKDDDLGIHTV- 63

Query: 68 VKGEEFHWTFKD 78
           +  E+++ F+D
Sbjct: 64 ARSYEYNFKFED 70

[Close]

BLAST of Cla97C09G172155 vs. TAIR 10
Match: AT5G04350.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 42.4 bits (98), Expect = 2.6e-04
Identity = 21/45 (46.67%), Postives = 31/45 (68.89%), Query Frame = 0


Query: 35 SQIHVVNGLNNETLL-VHCNSKDDDLGSHTLTVKGEEFHWTFKDD 79
          S++ + N L +  LL VHC SKDDDLG H L + G+++ +TF D+
Sbjct: 27 SKVVLSNQLEHSKLLKVHCRSKDDDLGEHILKI-GQDYEFTFGDN 70

[Close]

BLAST of Cla97C09G172155 vs. TAIR 10
Match: AT4G16195.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 41.6 bits (96), Expect = 4.4e-04
Identity = 28/80 (35.00%), Postives = 43/80 (53.75%), Query Frame = 0


Query: 8  LTVVLLLVVAAVGVVQPCTSIPLP---------FPTSQ--IHVVNGLNNE-TLLVHCNSK 67
          L ++++ +   +        IP+P         FPTS+  + + N L N+ TLL HC SK
Sbjct: 10 LFILIIFITTKLSQADHKNDIPVPNDPSSTNSVFPTSKRTVEINNDLGNQLTLLYHCKSK 69

Query: 68 DDDLGSHTLTVKGEEFHWTF 76
          DDDLG+ TL   GE + ++F
Sbjct: 70 DDDLGNRTLQ-PGESWSFSF 88

[Close]

BLAST of Cla97C09G172155 vs. TAIR 10
Match: AT5G06030.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 40.8 bits (94), Expect = 7.5e-04
Identity = 18/36 (50.00%), Postives = 22/36 (61.11%), Query Frame = 0


Query: 40 VNGLNNETLLVHCNSKDDDLGSHTLTVKGEEFHWTF 76
          +   N+  L +HC S+DDDLG H L  KGE F W F
Sbjct: 50 IQNYNDYLLAIHCKSRDDDLGFHIL-AKGELFGWKF 84

The following BLAST results are available for this feature:

BLAST of Cla97C09G172155 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067970.1	6.3e-29	50.34	uncharacterized protein E6C27_scaffold138G001560 [Cucumis melo var. makuwa]	[more]
XP_008461539.1	6.1e-24	45.58	PREDICTED: uncharacterized protein LOC103500111 [Cucumis melo]	[more]
XP_008462114.1	3.3e-22	47.48	PREDICTED: uncharacterized protein LOC103500542 [Cucumis melo]	[more]
XP_004139722.1	8.2e-21	45.65	S-protein homolog 1-like [Cucumis sativus]	[more]
KAE8646232.1	3.0e-15	43.41	hypothetical protein Csa_016625, partial [Cucumis sativus]	[more]

BLAST of Cla97C09G172155 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cla97C09G172155 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VL75	3.1e-29	50.34	S-protein homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G00...	[more]
A0A1S3CEQ0	3.0e-24	45.58	S-protein homolog OS=Cucumis melo OX=3656 GN=LOC103500111 PE=3 SV=1	[more]
A0A1S3CG89	1.6e-22	47.48	S-protein homolog OS=Cucumis melo OX=3656 GN=LOC103500542 PE=3 SV=1	[more]
A0A6J1CPC6	1.6e-14	37.41	S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111013506 PE=3 SV=1	[more]
A0A6J1IHQ8	2.1e-14	44.25	S-protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111473723 PE=3 SV=1	[more]

BLAST of Cla97C09G172155 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16295.1	1.5e-04	44.68	S-protein homologue 1	[more]
AT2G06090.1	2.6e-04	36.11	Plant self-incompatibility protein S1 family	[more]
AT5G04350.1	2.6e-04	46.67	Plant self-incompatibility protein S1 family	[more]
AT4G16195.1	4.4e-04	35.00	Plant self-incompatibility protein S1 family	[more]
AT5G06030.1	7.5e-04	50.00	Plant self-incompatibility protein S1 family	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010264	Plant self-incompatibility S1	PFAM	PF05938	Self-incomp_S1	coord: 36..77 e-value: 2.2E-9 score: 37.8
IPR010264	Plant self-incompatibility S1	PANTHER	PTHR31232	FAMILY NOT NAMED	coord: 9..77
None	No IPR available	PANTHER	PTHR31232:SF93	BINDING PROTEIN, PUTATIVE-RELATED	coord: 9..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C09G172155.1	Cla97C09G172155.1	mRNA