Cla97C09G171050 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C09G171050
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	50S ribosomal protein L18
Location	Cla97Chr09: 7412292 .. 7415422 (-)
RNA-Seq Expression	Cla97C09G171050
Synteny	Cla97C09G171050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAAACACTTCCTTGGAAATACGCGGAAACATGTGGTTTGTGCATGTGAAGTAAACAGGTTCAGGCCTTATTTGTTTGTGCCAACAAGTGACTTTCATAAAGGGGAGGTAAAATTTCATCCTGTAGTTATCAATATTCTTGTTTTTAAATATTTCATTTCTTTTAGTAATCCAAACCTCACTATACACTATACATCTTCAAAACCACAAGGTTTCACTCTTTGCATAAATTTACATATTAAGGTAACATCCGATACCAGAAAATAATGTTGACTTGCACCAAAAAGGCAATTTACCCAACAATAATTTCCTGGATGCAATAGTTTTGAAAAGCTTTGGATAGACCACACCAAGCCATATGAAGCTTGATTAATGCAAAGATTTCTTCTCATGAGGAGCATATTTATGATCAAAGAACTTATTCTTCTCAAACCAAATTCCCATTGGTAGACTTGACAATGTTGATCCAAAGATTCCTAGTGTTTCCTTCTAAATCGTGACCGCTTAAGGAACCAAATATGTTACTTCTAGTTTAAACTTTGAAATTAATAGCCTCTGAGCAAATAACTTTAAGATACCTCCCATGAAATATTATGGGAGGATATTTCTCTAGAGCTCCCCTCCTTATCCTACCTCGTTTGCATGTATTGGGGAAAGGTAAGGGAACGCATTTATGGGAAAATCAGTAGGTGGGGGATAGACCTCTCTAGTCTACGTTTCCTTGTTTCCATCATTTGTTGTCCCTTAAACATCGTGTGGTTTCTAATTTTTTGTTAGGTCTGGACCCTTAGGTTGTTTCTTTTTCCGTTTGATTTTTGTTGTTTGTTGACCATTAGGAAACAACAAAGGTCGCCTCTCTTGTGTCATTGGTTGAAGAGTTTAATCTTTCTAGGCTTGGGAGAAGGGCTGTTTGAGTTTGGAGGCTCGGTACTTAGAGGGATTCTCTTGTAATTCTTTCTTTTGGCACTTGTTGGATCCCTCTCATTAGTGAGTTAGTCTTTGACGTTCTATGGAGGATTAAGATTCCTAAGAAAGTTAAGTTCTATACCTGACATGTTTTACTTGGTCGTATGAACACTATGGATCGACTTTTGAGAAAGATATCTTTGTTAGTGGGCCCATGCTGCTGTATTCTTTTTCGGAAGGTAGAGGAAGATCTGGATCACCTTCTTTGAAGTAGTGAGTTTGTGAGATCTATGTGGAGCTGGTTCTTTTAGGAGTTTGGTTTTATGCTTGCTCGCGGCTGTTAGAGATTCAATTGAGGAGTTCCTCCATCCGCCTTTTAGTAAGAAAGGTCATTTTTTATGGTTTGGTGTGCTTTGATATAGGATCTTTAGGGTGAGAGAAATAATAGAGTTTTAAGAGGTATGGAGAGGGGGACTTTTTGTGATTTTTGGTTCTTGGTGAGGTTCCATGTTTTTCTTTGGGCTTCAATTTTAAAGACTTTTTGTAATTATTCTATAGGTAACATTTTACCTAGTTGGAATTCTTTTCTTTATTGGGGTTTTTAGGGCTTGGTTTTTATGTGCCCTTGTATTCTTTCATTTCTTCTTAATGAAGACAGTTGTTTCTATTAAAAGAAAAAACCTCCCATAAGCTTTTCGTAGGAGTTGGGAGTTAATTGGTTTTCGTATATGGATACTACCTCTACAATGGGTTGACATTTTCATTTATTTATGTCTATTTTTTTAAAAGAAGAAACAAACTTGGATTAAAGGAAAGAGGAAAAACAACCTAAGGGTCTGGGGTAGAGAGAACCCCTCCCGAAAGAACTATGAGAACACTTGGAAAGGTTGTAGACTTGTAATTATAAAAGAATTTCCTATGAGTATAGCTCCACCATGAGGAAGCTAACAAAGGTTTTAGCCTAGGCTTTTTCCGTTTTCAGTTATTGTTTTCTTGTTTTGGTTAGGAAGTTAAGCGTGTTAGTTAGATGTTGACTTGTAACTGATTCTTTTAGTCAGTTTTATAGCTGTTATTATAGTTAGTTGGGTGGCTGGACATTATCTCCTATAAATTGAAGGTCTTTCCAAAGATGCAAGGCAATTTTCATATAACTAATTAAGATTTATGAGAGGTGTTGATTTCAAACTAAGTAACTAGAATTATAAATATTCTATAAGTTTCAGATATGAATTGCTGTAGGGCTAGACAGTAATCCTTATGTAAGTTTGCCCAGACGCCAACAATGATATAGAAAATCATATGTTCATATTTAATCAATATCTATATCCCTATATCGTCTTATTGGCCATTCTCTTGACTTCTAAAAGGCCATCCTCACATGATGTTATACGAAGTCTTGGTTGGAAATAATTAATCATGTTCTGATGTTCATGCTGTTTAAATTATTCCATATTTTGCATTAGAATAATTAGTTGCCCAAATTTAACCAAGCTTTTTTCAACCTTTGATTATTCCATGCTTGATTGATGCTCCATCACAGGTCCATTATGCACCCAGAAGTTTCTTTGGTGTAGAGGACTTCTTAGATGATGATAATAGTCGGCCATATACATACCAGAAGGTGAAGAAATCCAAGAATCCAAAAAAGCATATATCATTTAAGCAACGGACAGTAGCCTACATGGAACCATTTACACTCGATGTGTTCATCTCAAAGCGGTTCGTTTCAGCAGCACTTACACACAGGGTGACTTGCAAACAAGTTGCAGTTGCAGGTACTAACTCAAAAGATATCAAAGCTATTCTTAGGTCTCGTTCAGATATTCCTGCTTGTTTGGCCGTTGGCCGTATTTTGGCAGAGAGGGCTAGAGAAGCTGATGTTTATACCGCTAGTTATACTCCTAGAGAGAGGGACAAATTTGAAGGCAAAATAAGAGCTGTGGTTCAGTCTCTTATTGATAACGGGATTGATGTAAAAATTTATCTGGAGTAAAAAAAACGGCTTATATTGTTTATGAAATAACACTTCTGGATCATTGATTATCAAGGTTCAGATACCGTGTGGTTTCTGCAGTGTTTGTTTCTTGTCCGAACTAAAACAGGTTGTGCCTGGGTGCAAGGCACATGTAGCTCTGAGCTTTTCCATTAGGGTTTCCTTGTTAACTAGAAAAAAGTCAAATTTACTCCGCCTAAATGTAAATTTTTTTTTGTTTTTCAACTAT

mRNA sequence

ATGTTGAAACACTTCCTTGGAAATACGCGGAAACATGTGGTTTGTGCATGTGAAGTAAACAGGTTCAGGCCTTATTTGTTTGTGCCAACAAGTGACTTTCATAAAGGGGAGGTAAAATTTCATCCTGTAGTTATCAATATTCTTGTTTTTAAATATTTCATTTCTTTTAGTAATCCAAACCTCACTATACACTATACATCTTCAAAACCACAAGGTTTCACTCTTTGCATAAATTTACATATTAAGGTCCATTATGCACCCAGAAGTTTCTTTGGTGTAGAGGACTTCTTAGATGATGATAATAGTCGGCCATATACATACCAGAAGGTGAAGAAATCCAAGAATCCAAAAAAGCATATATCATTTAAGCAACGGACAGTAGCCTACATGGAACCATTTACACTCGATGTGTTCATCTCAAAGCGGTTCGTTTCAGCAGCACTTACACACAGGGTGACTTGCAAACAAGTTGCAGTTGCAGGTACTAACTCAAAAGATATCAAAGCTATTCTTAGGTCTCGTTCAGATATTCCTGCTTGTTTGGCCGTTGGCCGTATTTTGGCAGAGAGGGCTAGAGAAGCTGATGTTTATACCGCTAGTTATACTCCTAGAGAGAGGGACAAATTTGAAGGCAAAATAAGAGCTGTGGTTCAGTCTCTTATTGATAACGGGATTGATGTAAAAATTTATCTGGAGTAAAAAAAACGGCTTATATTGTTTATGAAATAACACTTCTGGATCATTGATTATCAAGGTTCAGATACCGTGTGGTTTCTGCAGTGTTTGTTTCTTGTCCGAACTAAAACAGGTTGTGCCTGGGTGCAAGGCACATGTAGCTCTGAGCTTTTCCATTAGGGTTTCCTTGTTAACTAGAAAAAAGTCAAATTTACTCCGCCTAAATGTAAATTTTTTTTTGTTTTTCAACTAT

Coding sequence (CDS)

ATGTTGAAACACTTCCTTGGAAATACGCGGAAACATGTGGTTTGTGCATGTGAAGTAAACAGGTTCAGGCCTTATTTGTTTGTGCCAACAAGTGACTTTCATAAAGGGGAGGTAAAATTTCATCCTGTAGTTATCAATATTCTTGTTTTTAAATATTTCATTTCTTTTAGTAATCCAAACCTCACTATACACTATACATCTTCAAAACCACAAGGTTTCACTCTTTGCATAAATTTACATATTAAGGTCCATTATGCACCCAGAAGTTTCTTTGGTGTAGAGGACTTCTTAGATGATGATAATAGTCGGCCATATACATACCAGAAGGTGAAGAAATCCAAGAATCCAAAAAAGCATATATCATTTAAGCAACGGACAGTAGCCTACATGGAACCATTTACACTCGATGTGTTCATCTCAAAGCGGTTCGTTTCAGCAGCACTTACACACAGGGTGACTTGCAAACAAGTTGCAGTTGCAGGTACTAACTCAAAAGATATCAAAGCTATTCTTAGGTCTCGTTCAGATATTCCTGCTTGTTTGGCCGTTGGCCGTATTTTGGCAGAGAGGGCTAGAGAAGCTGATGTTTATACCGCTAGTTATACTCCTAGAGAGAGGGACAAATTTGAAGGCAAAATAAGAGCTGTGGTTCAGTCTCTTATTGATAACGGGATTGATGTAAAAATTTATCTGGAGTAA

Protein sequence

MLKHFLGNTRKHVVCACEVNRFRPYLFVPTSDFHKGEVKFHPVVINILVFKYFISFSNPNLTIHYTSSKPQGFTLCINLHIKVHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSAALTHRVTCKQVAVAGTNSKDIKAILRSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE

Homology

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BLAST of Cla97C09G171050 vs. NCBI nr
Match: XP_038890306.1 (50S ribosomal protein L18 [Benincasa hispida])

HSP 1 Score: 345.9 bits (886), Expect = 2.7e-91
Identity = 180/232 (77.59%), Postives = 184/232 (79.31%), Query Frame = 0


Query: 1   MLKHFLGNTRKHVVCACEVNRFRPYLFVPTSDFHKGEVKFHPVVINILVFKYFISFSNPN 60
           ML+HFLGN RKHVVCACEVNR RPYL VPTSDFHKGE                       
Sbjct: 1   MLRHFLGNMRKHVVCACEVNRVRPYLLVPTSDFHKGE----------------------- 60

Query: 61  LTIHYTSSKPQGFTLCINLHIKVHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHI 120
                                 VHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHI
Sbjct: 61  ----------------------VHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHI 120

Query: 121 SFKQRTVAYMEPFTLDVFISKRFVSAALTHRVTCKQVAVAGTNSKDIKAILRSRSDIPAC 180
           SFKQRTVAYMEPFTLDVFISKRFVSA+LTHRVTCKQVAVAGTNSKDIKA+L+SRSDIPAC
Sbjct: 121 SFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPAC 180

Query: 181 LAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 233
           LAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Sbjct: 181 LAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 187

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BLAST of Cla97C09G171050 vs. NCBI nr
Match: XP_004139203.1 (uncharacterized protein LOC101215592 [Cucumis sativus] >XP_031736382.1 uncharacterized protein LOC101215592 [Cucumis sativus] >XP_031736383.1 uncharacterized protein LOC101215592 [Cucumis sativus] >KGN60851.1 hypothetical protein Csa_019355 [Cucumis sativus])

HSP 1 Score: 342.0 bits (876), Expect = 3.9e-90
Identity = 178/232 (76.72%), Postives = 183/232 (78.88%), Query Frame = 0


Query: 1   MLKHFLGNTRKHVVCACEVNRFRPYLFVPTSDFHKGEVKFHPVVINILVFKYFISFSNPN 60
           MLKHFLGN RKHVVCACEVNRFRPYL VPTSDFHKGE                       
Sbjct: 1   MLKHFLGNMRKHVVCACEVNRFRPYLLVPTSDFHKGE----------------------- 60

Query: 61  LTIHYTSSKPQGFTLCINLHIKVHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHI 120
                                 VH APRSFFG+EDFLDDDNSRPYTYQK KKSKNPKKHI
Sbjct: 61  ----------------------VHCAPRSFFGIEDFLDDDNSRPYTYQKSKKSKNPKKHI 120

Query: 121 SFKQRTVAYMEPFTLDVFISKRFVSAALTHRVTCKQVAVAGTNSKDIKAILRSRSDIPAC 180
           SFKQRT+AYMEPFTLDVFISKRFVSA+LTHRVTCKQVAVAGTNSKDIKA+L+SRSDIPAC
Sbjct: 121 SFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPAC 180

Query: 181 LAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 233
           LAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Sbjct: 181 LAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 187

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BLAST of Cla97C09G171050 vs. NCBI nr
Match: XP_008455473.1 (PREDICTED: 50S ribosomal protein L18 [Cucumis melo] >XP_008455482.1 PREDICTED: 50S ribosomal protein L18 [Cucumis melo])

HSP 1 Score: 340.5 bits (872), Expect = 1.1e-89
Identity = 178/232 (76.72%), Postives = 182/232 (78.45%), Query Frame = 0


Query: 1   MLKHFLGNTRKHVVCACEVNRFRPYLFVPTSDFHKGEVKFHPVVINILVFKYFISFSNPN 60
           MLKHFLGN  KHVVCACEVNRFRPYL VPTSDFHKGE                       
Sbjct: 1   MLKHFLGNMGKHVVCACEVNRFRPYLLVPTSDFHKGE----------------------- 60

Query: 61  LTIHYTSSKPQGFTLCINLHIKVHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHI 120
                                 VH APRSFFGVEDFLDDDNSRPYTYQK KKSKNPKKHI
Sbjct: 61  ----------------------VHCAPRSFFGVEDFLDDDNSRPYTYQKAKKSKNPKKHI 120

Query: 121 SFKQRTVAYMEPFTLDVFISKRFVSAALTHRVTCKQVAVAGTNSKDIKAILRSRSDIPAC 180
           SFKQRT+AYMEPFTLDVFISKRFVSA+LTHRVTCKQVAVAGTNSKDIKA+L+SRSDIPAC
Sbjct: 121 SFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPAC 180

Query: 181 LAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 233
           LAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Sbjct: 181 LAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 187

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BLAST of Cla97C09G171050 vs. NCBI nr
Match: XP_022999138.1 (uncharacterized protein LOC111493611 [Cucurbita maxima] >XP_022999139.1 uncharacterized protein LOC111493611 [Cucurbita maxima])

HSP 1 Score: 337.4 bits (864), Expect = 9.6e-89
Identity = 174/232 (75.00%), Postives = 182/232 (78.45%), Query Frame = 0


Query: 1   MLKHFLGNTRKHVVCACEVNRFRPYLFVPTSDFHKGEVKFHPVVINILVFKYFISFSNPN 60
           MLKH LGN RKHVVC+CEVNR RPYLFVPTSDFHKGE                       
Sbjct: 1   MLKHLLGNMRKHVVCSCEVNRARPYLFVPTSDFHKGE----------------------- 60

Query: 61  LTIHYTSSKPQGFTLCINLHIKVHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHI 120
                                  HYAPRSFFGVEDF+DDDNSRPYTYQK KKSKNPKKH+
Sbjct: 61  ----------------------AHYAPRSFFGVEDFVDDDNSRPYTYQKGKKSKNPKKHV 120

Query: 121 SFKQRTVAYMEPFTLDVFISKRFVSAALTHRVTCKQVAVAGTNSKDIKAILRSRSDIPAC 180
           SFKQRTVAYMEPFTLDVFISKRFVSA+LTHRVTCKQVAVAGTNSKDIKA+L+SRSDIPAC
Sbjct: 121 SFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPAC 180

Query: 181 LAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 233
           LAVGRIL+ERA+EADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Sbjct: 181 LAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 187

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BLAST of Cla97C09G171050 vs. NCBI nr
Match: XP_022946296.1 (uncharacterized protein LOC111450420 [Cucurbita moschata] >XP_022946297.1 uncharacterized protein LOC111450420 [Cucurbita moschata] >XP_023546735.1 uncharacterized protein LOC111805749 [Cucurbita pepo subsp. pepo] >XP_023546736.1 uncharacterized protein LOC111805749 [Cucurbita pepo subsp. pepo] >KAG7030275.1 hypothetical protein SDJN02_08622 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 337.0 bits (863), Expect = 1.3e-88
Identity = 175/232 (75.43%), Postives = 181/232 (78.02%), Query Frame = 0


Query: 1   MLKHFLGNTRKHVVCACEVNRFRPYLFVPTSDFHKGEVKFHPVVINILVFKYFISFSNPN 60
           MLKH LGN RKH VCACEVNR RPYLFVPTSDFHKGE                       
Sbjct: 1   MLKHLLGNMRKHAVCACEVNRARPYLFVPTSDFHKGE----------------------- 60

Query: 61  LTIHYTSSKPQGFTLCINLHIKVHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHI 120
                                  HYAPRSFFGVEDF+DDDNSRPYTYQK KKSKNPKKHI
Sbjct: 61  ----------------------AHYAPRSFFGVEDFVDDDNSRPYTYQKGKKSKNPKKHI 120

Query: 121 SFKQRTVAYMEPFTLDVFISKRFVSAALTHRVTCKQVAVAGTNSKDIKAILRSRSDIPAC 180
           SFKQRTVAYMEPFTLDVFISKRFVSA+LTHRVTCKQVAVAGTNSKDIKA+L+SRSDIPAC
Sbjct: 121 SFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPAC 180

Query: 181 LAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 233
           LAVGRIL+ERA+EADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Sbjct: 181 LAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 187

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BLAST of Cla97C09G171050 vs. ExPASy Swiss-Prot
Match: C3MAZ6 (50S ribosomal protein L18 OS=Sinorhizobium fredii (strain NBRC 101917 / NGR234) OX=394 GN=rplR PE=3 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 7.6e-04
Identity = 28/92 (30.43%), Postives = 51/92 (55.43%), Query Frame = 0


Query: 135 LDVFISKRFVSAALTHRVTCKQVAVAGTNSKDIKAILRSRSDIPACLAVGRILAERAREA 194
           L V  S + + A +   V  K +A A T   D+K+ L++ +D  A  AVG++LAERA +A
Sbjct: 29  LSVHRSSKNIYAQIIDDVAGKTIAAASTLEADLKSALKTGADTAAATAVGKLLAERASKA 88

Query: 195 DVYTASYTPRERDKFEGKIRAVVQSLIDNGID 227
            V    +  R    + G+++A+ ++  + G++
Sbjct: 89  GVKDVVF-DRGAFIYHGRVKALAEAAREGGLN 119

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BLAST of Cla97C09G171050 vs. ExPASy Swiss-Prot
Match: B1Z777 (50S ribosomal protein L18 OS=Methylorubrum populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) OX=441620 GN=rplR PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 9.9e-04
Identity = 29/92 (31.52%), Postives = 50/92 (54.35%), Query Frame = 0


Query: 135 LDVFISKRFVSAALTHRVTCKQVAVAGTNSKDIKAILRSRSDIPACLAVGRILAERAREA 194
           L VF S + +   +      + +A A +  KD+KA L++ +D  A  AVG+++AERA+ A
Sbjct: 29  LSVFRSSKQIYVQVIDDAVGRTLAAASSLDKDLKASLKTGADKAAAEAVGKLVAERAKAA 88

Query: 195 DVYTASYTPRERDKFEGKIRAVVQSLIDNGID 227
            V T     R    F G+++A+  +  + G+D
Sbjct: 89  GV-TKVVFDRSGYIFHGRVKALADAAREGGLD 119

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BLAST of Cla97C09G171050 vs. ExPASy TrEMBL
Match: A0A0A0LLI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G013320 PE=4 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 1.9e-90
Identity = 178/232 (76.72%), Postives = 183/232 (78.88%), Query Frame = 0


Query: 1   MLKHFLGNTRKHVVCACEVNRFRPYLFVPTSDFHKGEVKFHPVVINILVFKYFISFSNPN 60
           MLKHFLGN RKHVVCACEVNRFRPYL VPTSDFHKGE                       
Sbjct: 1   MLKHFLGNMRKHVVCACEVNRFRPYLLVPTSDFHKGE----------------------- 60

Query: 61  LTIHYTSSKPQGFTLCINLHIKVHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHI 120
                                 VH APRSFFG+EDFLDDDNSRPYTYQK KKSKNPKKHI
Sbjct: 61  ----------------------VHCAPRSFFGIEDFLDDDNSRPYTYQKSKKSKNPKKHI 120

Query: 121 SFKQRTVAYMEPFTLDVFISKRFVSAALTHRVTCKQVAVAGTNSKDIKAILRSRSDIPAC 180
           SFKQRT+AYMEPFTLDVFISKRFVSA+LTHRVTCKQVAVAGTNSKDIKA+L+SRSDIPAC
Sbjct: 121 SFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPAC 180

Query: 181 LAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 233
           LAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Sbjct: 181 LAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 187

[Close]

BLAST of Cla97C09G171050 vs. ExPASy TrEMBL
Match: A0A1S3C286 (50S ribosomal protein L18 OS=Cucumis melo OX=3656 GN=LOC103495625 PE=4 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 5.5e-90
Identity = 178/232 (76.72%), Postives = 182/232 (78.45%), Query Frame = 0


Query: 1   MLKHFLGNTRKHVVCACEVNRFRPYLFVPTSDFHKGEVKFHPVVINILVFKYFISFSNPN 60
           MLKHFLGN  KHVVCACEVNRFRPYL VPTSDFHKGE                       
Sbjct: 1   MLKHFLGNMGKHVVCACEVNRFRPYLLVPTSDFHKGE----------------------- 60

Query: 61  LTIHYTSSKPQGFTLCINLHIKVHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHI 120
                                 VH APRSFFGVEDFLDDDNSRPYTYQK KKSKNPKKHI
Sbjct: 61  ----------------------VHCAPRSFFGVEDFLDDDNSRPYTYQKAKKSKNPKKHI 120

Query: 121 SFKQRTVAYMEPFTLDVFISKRFVSAALTHRVTCKQVAVAGTNSKDIKAILRSRSDIPAC 180
           SFKQRT+AYMEPFTLDVFISKRFVSA+LTHRVTCKQVAVAGTNSKDIKA+L+SRSDIPAC
Sbjct: 121 SFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPAC 180

Query: 181 LAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 233
           LAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Sbjct: 181 LAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 187

[Close]

BLAST of Cla97C09G171050 vs. ExPASy TrEMBL
Match: A0A6J1KIR9 (uncharacterized protein LOC111493611 OS=Cucurbita maxima OX=3661 GN=LOC111493611 PE=4 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 4.7e-89
Identity = 174/232 (75.00%), Postives = 182/232 (78.45%), Query Frame = 0


Query: 1   MLKHFLGNTRKHVVCACEVNRFRPYLFVPTSDFHKGEVKFHPVVINILVFKYFISFSNPN 60
           MLKH LGN RKHVVC+CEVNR RPYLFVPTSDFHKGE                       
Sbjct: 1   MLKHLLGNMRKHVVCSCEVNRARPYLFVPTSDFHKGE----------------------- 60

Query: 61  LTIHYTSSKPQGFTLCINLHIKVHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHI 120
                                  HYAPRSFFGVEDF+DDDNSRPYTYQK KKSKNPKKH+
Sbjct: 61  ----------------------AHYAPRSFFGVEDFVDDDNSRPYTYQKGKKSKNPKKHV 120

Query: 121 SFKQRTVAYMEPFTLDVFISKRFVSAALTHRVTCKQVAVAGTNSKDIKAILRSRSDIPAC 180
           SFKQRTVAYMEPFTLDVFISKRFVSA+LTHRVTCKQVAVAGTNSKDIKA+L+SRSDIPAC
Sbjct: 121 SFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPAC 180

Query: 181 LAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 233
           LAVGRIL+ERA+EADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Sbjct: 181 LAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 187

[Close]

BLAST of Cla97C09G171050 vs. ExPASy TrEMBL
Match: A0A6J1G387 (uncharacterized protein LOC111450420 OS=Cucurbita moschata OX=3662 GN=LOC111450420 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 6.1e-89
Identity = 175/232 (75.43%), Postives = 181/232 (78.02%), Query Frame = 0


Query: 1   MLKHFLGNTRKHVVCACEVNRFRPYLFVPTSDFHKGEVKFHPVVINILVFKYFISFSNPN 60
           MLKH LGN RKH VCACEVNR RPYLFVPTSDFHKGE                       
Sbjct: 1   MLKHLLGNMRKHAVCACEVNRARPYLFVPTSDFHKGE----------------------- 60

Query: 61  LTIHYTSSKPQGFTLCINLHIKVHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHI 120
                                  HYAPRSFFGVEDF+DDDNSRPYTYQK KKSKNPKKHI
Sbjct: 61  ----------------------AHYAPRSFFGVEDFVDDDNSRPYTYQKGKKSKNPKKHI 120

Query: 121 SFKQRTVAYMEPFTLDVFISKRFVSAALTHRVTCKQVAVAGTNSKDIKAILRSRSDIPAC 180
           SFKQRTVAYMEPFTLDVFISKRFVSA+LTHRVTCKQVAVAGTNSKDIKA+L+SRSDIPAC
Sbjct: 121 SFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPAC 180

Query: 181 LAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 233
           LAVGRIL+ERA+EADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Sbjct: 181 LAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 187

[Close]

BLAST of Cla97C09G171050 vs. ExPASy TrEMBL
Match: A0A6J1DBH5 (uncharacterized protein LOC111018783 OS=Momordica charantia OX=3673 GN=LOC111018783 PE=4 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 1.0e-88
Identity = 176/232 (75.86%), Postives = 180/232 (77.59%), Query Frame = 0


Query: 1   MLKHFLGNTRKHVVCACEVNRFRPYLFVPTSDFHKGEVKFHPVVINILVFKYFISFSNPN 60
           MLKHFLG  RKHVVC CEVNR RPY FVPTSDFHKGE                       
Sbjct: 1   MLKHFLGIMRKHVVCTCEVNRVRPYFFVPTSDFHKGE----------------------- 60

Query: 61  LTIHYTSSKPQGFTLCINLHIKVHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHI 120
                                 VH+APRSFFGVEDFLDDDNSRPYTYQK KKSKNPKKHI
Sbjct: 61  ----------------------VHFAPRSFFGVEDFLDDDNSRPYTYQKGKKSKNPKKHI 120

Query: 121 SFKQRTVAYMEPFTLDVFISKRFVSAALTHRVTCKQVAVAGTNSKDIKAILRSRSDIPAC 180
           SFKQRTVAYMEPFTLDVFISKRFVSA+LTHRVTCKQVAVAGTNSKDIKA+L+SRSDIPAC
Sbjct: 121 SFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPAC 180

Query: 181 LAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 233
           LAVG ILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Sbjct: 181 LAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 187

[Close]

BLAST of Cla97C09G171050 vs. TAIR 10
Match: AT1G08845.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 266.5 bits (680), Expect = 1.9e-71
Identity = 128/148 (86.49%), Postives = 144/148 (97.30%), Query Frame = 0


Query: 85  YAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFV 144
           +APRSFFGVED++DDD SRPYTYQK KKSKNP KH+SFKQRTVAYMEPFTLDVFISKRFV
Sbjct: 42  FAPRSFFGVEDYVDDDTSRPYTYQKEKKSKNPDKHVSFKQRTVAYMEPFTLDVFISKRFV 101

Query: 145 SAALTHRVTCKQVAVAGTNSKDIKAILRSRSDIPACLAVGRILAERAREADVYTASYTPR 204
           SA+LTHRVTC+QVAVAGTNSKD+KA+LRSR DIPAC+++GRIL+ERA+EADVYTASYTPR
Sbjct: 102 SASLTHRVTCRQVAVAGTNSKDVKAVLRSRCDIPACMSIGRILSERAKEADVYTASYTPR 161

Query: 205 ERDKFEGKIRAVVQSLIDNGIDVKIYLE 233
           ++DKFEGKIRAVVQSLIDNGIDVKIYL+
Sbjct: 162 DQDKFEGKIRAVVQSLIDNGIDVKIYLD 189

[Close]

BLAST of Cla97C09G171050 vs. TAIR 10
Match: AT1G08845.2 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 266.5 bits (680), Expect = 1.9e-71
Identity = 128/148 (86.49%), Postives = 144/148 (97.30%), Query Frame = 0


Query: 85  YAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFV 144
           +APRSFFGVED++DDD SRPYTYQK KKSKNP KH+SFKQRTVAYMEPFTLDVFISKRFV
Sbjct: 87  FAPRSFFGVEDYVDDDTSRPYTYQKEKKSKNPDKHVSFKQRTVAYMEPFTLDVFISKRFV 146

Query: 145 SAALTHRVTCKQVAVAGTNSKDIKAILRSRSDIPACLAVGRILAERAREADVYTASYTPR 204
           SA+LTHRVTC+QVAVAGTNSKD+KA+LRSR DIPAC+++GRIL+ERA+EADVYTASYTPR
Sbjct: 147 SASLTHRVTCRQVAVAGTNSKDVKAVLRSRCDIPACMSIGRILSERAKEADVYTASYTPR 206

Query: 205 ERDKFEGKIRAVVQSLIDNGIDVKIYLE 233
           ++DKFEGKIRAVVQSLIDNGIDVKIYL+
Sbjct: 207 DQDKFEGKIRAVVQSLIDNGIDVKIYLD 234

[Close]

BLAST of Cla97C09G171050 vs. TAIR 10
Match: AT3G22450.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 112.1 bits (279), Expect = 6.1e-25
Identity = 57/119 (47.90%), Postives = 82/119 (68.91%), Query Frame = 0


Query: 114 KNPKKHISFKQRTVAYMEPFTLDVFISKRFVSAALTHRVTCKQVAVAGTNSKDIKAILRS 173
           K  ++  +F Q T  +  PF LD++ISK  V A + HRVT K V VA + SKD+K  L S
Sbjct: 179 KKRERTFTFNQLTAPFHYPFCLDIYISKESVRACVIHRVTSKVVTVAHSISKDMKFDLGS 238

Query: 174 RSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 233
           R ++ AC AVG +LA+R+ E D++   YTPR+ DK EGK++ V+Q+LIDNG++VK+ L+
Sbjct: 239 RRNVAACAAVGAVLAQRSLEDDIHDVIYTPRKGDKIEGKLQVVLQALIDNGVNVKVKLK 297

[Close]

BLAST of Cla97C09G171050 vs. TAIR 10
Match: AT3G20230.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 101.7 bits (252), Expect = 8.3e-22
Identity = 50/113 (44.25%), Postives = 78/113 (69.03%), Query Frame = 0


Query: 113 SKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSAALTHRVTCKQVAVAGTNSKDIKAILR 172
           +K P +  S+KQRT  YM PF L+VF S++F+ A + HR T K ++VA TN++DI+  + 
Sbjct: 72  AKRPNRK-SWKQRTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNARDIRTNIP 131

Query: 173 SRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 226
           S  D  AC  +G+++AER+ EADVY  SY PR+ ++ EGK+  V+ ++ ++GI
Sbjct: 132 SLVDNEACRLIGKLIAERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEHGI 183

The following BLAST results are available for this feature:

BLAST of Cla97C09G171050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890306.1	2.7e-91	77.59	50S ribosomal protein L18 [Benincasa hispida]	[more]
XP_004139203.1	3.9e-90	76.72	uncharacterized protein LOC101215592 [Cucumis sativus] >XP_031736382.1 uncharact...	[more]
XP_008455473.1	1.1e-89	76.72	PREDICTED: 50S ribosomal protein L18 [Cucumis melo] >XP_008455482.1 PREDICTED: 5...	[more]
XP_022999138.1	9.6e-89	75.00	uncharacterized protein LOC111493611 [Cucurbita maxima] >XP_022999139.1 uncharac...	[more]
XP_022946296.1	1.3e-88	75.43	uncharacterized protein LOC111450420 [Cucurbita moschata] >XP_022946297.1 unchar...	[more]

BLAST of Cla97C09G171050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
C3MAZ6	7.6e-04	30.43	50S ribosomal protein L18 OS=Sinorhizobium fredii (strain NBRC 101917 / NGR234) ...	[more]
B1Z777	9.9e-04	31.52	50S ribosomal protein L18 OS=Methylorubrum populi (strain ATCC BAA-705 / NCIMB 1...	[more]

BLAST of Cla97C09G171050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLI4	1.9e-90	76.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G013320 PE=4 SV=1	[more]
A0A1S3C286	5.5e-90	76.72	50S ribosomal protein L18 OS=Cucumis melo OX=3656 GN=LOC103495625 PE=4 SV=1	[more]
A0A6J1KIR9	4.7e-89	75.00	uncharacterized protein LOC111493611 OS=Cucurbita maxima OX=3661 GN=LOC111493611...	[more]
A0A6J1G387	6.1e-89	75.43	uncharacterized protein LOC111450420 OS=Cucurbita moschata OX=3662 GN=LOC1114504...	[more]
A0A6J1DBH5	1.0e-88	75.86	uncharacterized protein LOC111018783 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]

BLAST of Cla97C09G171050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08845.1	1.9e-71	86.49	Ribosomal L18p/L5e family protein	[more]
AT1G08845.2	1.9e-71	86.49	Ribosomal L18p/L5e family protein	[more]
AT3G22450.1	6.1e-25	47.90	Ribosomal L18p/L5e family protein	[more]
AT3G20230.1	8.3e-22	44.25	Ribosomal L18p/L5e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 111..226 e-value: 4.0E-8 score: 33.6
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 1..232
None	No IPR available	GENE3D	3.30.420.100		coord: 110..226 e-value: 1.2E-15 score: 59.9
None	No IPR available	PANTHER	PTHR12899:SF5	RIBOSOMAL L18P/L5E FAMILY PROTEIN	coord: 1..232
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 123..225 e-value: 3.89305E-21 score: 82.5879
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 111..225

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C09G171050.2	Cla97C09G171050.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006812	cation transport
biological_process	GO:0034220	ion transmembrane transport
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016020	membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008097	5S rRNA binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003735	structural constituent of ribosome