Cla97C09G170540 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C09G170540
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	DNA-directed RNA polymerases II and IV subunit 5A
Location	Cla97Chr09: 6913114 .. 6919816 (+)
RNA-Seq Expression	Cla97C09G170540
Synteny	Cla97C09G170540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGAGGACCTTGGGATTCTCTAAGGCATTCCTTTTGGGAGGGATCGTTGATTCCTTTTGGGGGAGAATTCCACATTTCTTGGGAGACACTTCTTCGGAGGAAGTTCAACCTTGCAAGCTCAGGAAATCAAGTTGGGATATGTAGTAGTCCATCAGAGTGGAGTTTTGATGGAAGGTTCCAACACCAAGTTTGTAGAGTCAGGCATGTTATTGGGTTCCATGGTATGTGCTACTAGGTTGTACATATCACTTATTCATATCATAAATGAAAAAGGTTGGGAGTAAGTTTTCCCGTACATTGGCTAGTGTTACTCTAATACTTTACTTATCACTCGTGGTGCATTAATATGCACATTGATGACATTCTTTACTCATGCATGGGAGCTACATGGATCTTGTGAGTGGTGCGATGCGAGAGTTATACCAATGTGACATTGGTAAGAGTGATACATTCTACCAAATAACCTACATGAAAGAACATTTTGAAAACGAGAAAGTCTGGACTAGGGAGAGTATCCTTAGGCCACACAGGTTGAGGGCGAAAAATTCAATATCGAAATCCACCCTGTGACAAAGTGACCGGTAAAGAAAATTTAGATCACCCCATCATTTTTATGTCATCGCCAGACAATTCTAAGTCTCAATTTCAGTTTGAAATTCTAAAACTTTATATTCCAAAGATAATTTTGAAATGTTTATAAAAAATCAAAAGTAATATTCCAACTCTTGAAAGCGTAGGAGAATTTTTTAAACAAATAGTAAAGTTCAGGAGTATTTGTTATAATTTACCTAAAAATTCATCCGTTTATAAATAATTTTACATTTTTCTGTTAAATTAATAAGTTTAAGGCAAAATTCGATGAAATAAAAAATTTTGGGATTAAATTAATATATAAGTCTAAGGTGGCTAAAACGAGCATAACTCAATTGGCATATAAGTTATATTATAAACATTCGACTAAAAAATATATATTTAGAAAAAGAAAAAAAATGTAAGGTCAAAATTGATGTTTTTCATACAATTTCAAAGGATATAAAAGAGACGAGCCACCCCGCCGCTCACAATGTCAAATAAAATTAGAATAAATAAAGGAAAGAGAAAGCCCTAAACCCTTCTTTCATCTTCCTTGCTCCACCATCTTCTTCTTCACGCCGGCTCCTCCTCCTCCCTCTCAGCAGCCCAGTGTCGCCGCCCTCGCCCCACGTAGAAGCTTGCACCGATTTCTTGTTGTTACTGGTATTCTCTCAATCTCTATCTATGTCTTGTCTTCGAACTCGAAAAACTCAATTTATAACTTTTCTAATGAAGTAAAGGAGCAATACCCAGCATCAAATAGTGAACCAATCATTCCTTTTGAACTTCTTTCGAGTTAACACCAAGTTACCAATTGACCTTCCGCCAATTACTCAGTTGGTGGTACAACTAGAAATTGTATAGTTCCATAATCCTCAAGGGCTTCATCTTCTCAAATGCAAATTTCCTCCCATTCTAATTATTAGAAGCAATTTCTGCTTTAACAAGACCGATTACTAGAGTATAAATATATCTTGTGAGAATACCCAACATTGTGGAAAAAATATGTAGACTCGTGTATTCTTAAGAGAAAATAGCTTATATGTCAGAAATAACCCACGATTGTTTCATATTTCACAACTAGCAACCTTTTAAGAATTCATTAGTTTTTCTCGATCCTTCCCGGCCGAGATGAACCAACTTTTTCATCTTACATCCAGACTAGTGTGATTTTTAATTTGGGAAAGATCAAATATTGGGAAAGATTTAGTAAGATTTAGGAAAGATATAAGATCTCGGTCTTTATCCTAGATTCCACCAAGAAAGCCAAAAGAAAACCAATAGTTTGTATATAGGATGAAAAGGTTAATTTCTTGTTCAAATTTTGGTGGTCGATCTTGGCTGGAAGGACCGAGAAAAACTATTTCAACATATTTTCTAAAAGGGTGCTAGTTGTGAAATATGAAAGCTTTTTTAGGTTACTTCTAATAATTTCCCTAAGTGTTGGTTGAGTGGTTAAAAGAATAAATTTTGAGCTTTGTAAAGGGCTTAGAGGTAGGCGAACTCATGTTGCAGGCTGCAAAAATGACTGCTTTCTGTTCTGTTGACTCTCAGCTAGTGTGTTTTATGTAGAAAGGACTTGGAAGAAAGGTTGCACTTGTCTTTCCTATGCCCGTTTGCTGCTTCCTTTTGATCCAGCCTCTTTTGGATATTTTGGGTATAATTCGGCGGGGGCTCTTCTGAAGAGAATTTGGTATAAAGACATAAGACATTTATAGGAAGAGACTCTACTCTTGTTGTATATTGGGAAAAAAATAGATTGTTTTTGTCTACTTGGTATTCTTGACACTCTTTAGCTTTTGTAATTGTGGTTTAACTCAATTTTTTGCCAATTGGGAATTCTTTTTGTATTCCCCTTGGGTGTTGGGGGATATCTCATTTCCTTTTTGTGTCTCCCCCTCTTATTAATGAGATTGTTCTCTCATTCTAAGTGTAGGGCTAGAGGCCATAGGGAATGAGTTGAAGTCATAACAGTCACCTAACTAATATTTAATATTTTACAAGTATTCTTGACAACCAAATCTAATATGGTCAAGTGGTTTTCCAATTATAATAGTCCAAGTGTGTCCGAATTGACCTGAACACTCACAAGCATAAAAAAAGGGATAAATTTTGGTATTAGATATTTTTGAGTTTAAGAGTTCAAATCGCAATGGTCAACTAAGTGTATTAGATTAAACTTTTGGATGCAAAAATCATCATGGTTAAGCTGTTGTCTTGTAAGCTTGGTTGAGGTGTGATCGATACAATCACCTATAGGCTTTAGTTCTTTCATTGATAGGAAAAAGAAAAAAAAAAAAGGAATACAAGGGCATACAAAAAACCAAGCCTGCTAAAACTCTAGAGAATGGGTCCCAACTAAGTAAGATATTACCTAAGGAATAATTACGGAAGATCATATGAAACCAAAGCCCAAAAAGAGATGTGGAACCTCACCAAGGACCAAATCTCGCAAGGGTCTTTATCCACACCTCTAAACATTCTGTCGTTCCTCTCCCCTAAAGATCCCACGATAGGGCACACACCCCTGCAAATCACAAATAAGGCTCTTTCTCTTTGAAAAGTGGATGGAAGAGGAACTCCTCAATCATCAAATGAACATCCCTATGTCCAGCTAGCACAACATCAAACTCTTAAAAGAAGCAATTTCACATAGACATCGCAAATTGACACTCCCAGAGAAAGTGATCTAGGTTTTCCCCCAGCTTCCAACAAATAATACAACAAAAAGGGCCCAATAAGGGTACATGTTTGAAAATTGTTGTTGATATGTCATGTACACATGTCTGAAAATTGTTGTTGCAGGTCTGTGCTTTTGCAGCAGGATTTTATTTTTTTTTCTTTCAATTGTTGTCTCCATATTCAGTGTGTTCTATTTGTTCTCTTGTTCTTGTGTTCATCATTTAGTGTCTCCAACTTGTTTTGAATTTCTGGAAATTGTTGTTTTATTATATCTACGGCGAGTTCTTTATGTTGTGTCTTGTATTGGTTTTGAGATTTCCTGTATGTAACATAGCTAGTCACATTGATGTTCTGTGTTCATATTAATTAATTCTTACTCATTTAGAATGTGCGTTATATATTCTTTTTGAACCTATCTAGTTAATGAGCATTGAATTGTTTGACAATGAATTAGCCACAAACAAGATGGTGCTATCAGAGGAGGAAATCACCAGGCTTTTCAGAATTCGAAAAACTGTGTTTCAAATGCTAAAAGACCGAGGCTATTTTGTTGGAGACTTTGAGATTGATATGACAAGGGAGCAGTTTAAGCATAAATATGGTGAAAGCATGAAAAGAGAAGATATTGTTATTAATAAAGCCAAGAGAAATGATAGCTCTGACCAGGTATTGTCTCAGAAAAGGGAATATTTGATTAATATTTCTCATACTTATTAAAGTTCAGTTACAGGAGCCACAAGTTTCTCCTTAATTCTCTTATTTGTTTACCTCCTCTTATAGTGATTTTTTTTCTGTGTAGATATACGTGTTCTTTCCAGAAGAACCAAAGGTCGGCGTCAAGACAATTAAAACATATACCCAACGCATGAACTCAGAGAATGTTTATAGAGCAATATTGGTCGTTCAACAGAATTTGACCCCTTTCGCTCGTACCTGTATAAATGAAGTAATATCTACCAAAGTACACTTGGAAGTTTTCCAGGTGAAAATATTATATGGAGTATTTTTATGATTTAAGTTTGAGAAAAACCAAACCACCAGTTGGAGAAATAAATTAGATTCATCATTCACCAATAATTTGAGGAGAATCAAAGGAAACCTTCCTACTCCAAAAACTAGAAACCATATTGTGCTTTCTTCATTAATTCCTTGTTTTGCAATATGAGAATGAAAAATATGGGGATTTCCTGGATTCTCTGGTTGAAGAACAATTAAATGGCTAAGGTAGTTGTTCAATTGCTCTCCTCTGTTCTTTTCAAGGAAACAACTTTTCATTGATATAATGAAAAGAGTTTTACGCTCAAAATACAAAATACAGGGAACATAAAGATGAAATAGAAACATAAAAGAGGACAATCTCAAGAGTATCCTTAACTATAACAATGATTAATCAAAGAAAATAAAATCCCCTCAATTCAAACAAATATCTTCGAGAGAGAAATTAACATGAAGCTTAAAAAGAGAACACAACATATAAAATCTCTTGGTTTCTATTTTCTTGCTCTTTTCTTAGTTCATTTTAAATATAAAATCTTTATTATTATTATTATTTTTTTTTAATGTACATTTGTTGATGCAGGAAGCAGAATTGCTAGTTAATATCAAAGAACACGTTCTTGTTCCTGAGCACCAGTTACTTACCAATGAAGAGAAGAAGACACTACTGGAGAGATATACCGTGAAAGAAACACAGGTTAGCATTAATTCTTCATAAAATACAACATTGTGAGTATGCATCTCAAGATCTATATTGAAATGTGATATGTTCATGTATTCCTGCTACCACTTTGGTTCCCATGTCTGTAGCAGCAAATTAGGCATATGGTGAATCCATCGTTGGACTCGTCCAACCTTATCTCACCTAGCGACTAATAACTCAATTTATTCACTGTTCTATGTTCAAATTGCTCAATCTTATTTAGTGGAATCTTTCTGAGTCCTAGGATTCCATTAAGATGCAAGTCCATGTTTTAGTAGTGTTCAAATTGCTCAATCTTATTTAGTAGCTTGTGTTGTGCTCCATCACATTTTCTTAGCAACAATGAATTCTTGACCATGTTTTCCTTCTTTGCTCTATCTACCCCCCGGAGAATTATTTTAGGTTGCCTTTTGTTTTTTTAAAATAACCTAGGCATGTTGATTCCCCTAGTTTCTAAGGAGGGGCTTCCCCTACCCAAGATTAACTCCACAAGGGAAAAGGAATTTTAAGTTAAAGTTATCAAGGGTTTGTTTGGTAGGCAATCTAGAAAAACAAAATTTTGAAAATAAGGAATGCAATGAAAATAGAGTTGTATATTATATTTTCAAATATGTGTTTGGTAGCAAATTTATAAATTAAATTCTAAATTTTGAACAATTTTTTAAAATGTGTTTGATAATATACTTATGAACCATAAAACTAATTACAATTACTAATATATTAGGTTGAATATAAACTATTACTAATTCATTTATTAACTTGTTTTATGTTAAAAAATTTGTATAATTATTATTTTGTCATATCATATAATATATAATATATTATATAATACATCTTTTAACTTAACAAAAATGATTGAGTTTATAACATGAAATACTATATTTGTAATTGTTTTTATCTTTTCTACTATAATTTCGCATTTTAAAATTTTAAATTCAGAATCTAGATAGATTGAAAATGTAAAATTGTTATTTTTAGAATTTGTATTGTTTAGAGTATAGAATTCGTAAATAGTTTTCGAAAACACAATTAAGACACAGAACATAATTCAAATGGCTTACCTAACTAGTTGTAAATTTTCAACTCTAAAGTTTGAACCTAAAACTTTGGAGGGTATCTCCAAAGTCCAAACATGCTAAGCCAAGATCTCAACACGGGGGTGTCTATCACTATTACTTCACTAATCACAATGCAACCTACAGAGTCATTTGTCGGGTCGTACAGTCTTGTCTTGTCTACGTCTATTCATTAGTGTCTATATGTGTTTGCATTTCTGTTGCAATATGAATAAAATTCTTATATGGTTTTGCATATTTTGTGTTAGCTACCACGCATACAGGTGACTGACCCGGTTGCAAGATATTACGGGCTAAAGCGTGGACAAGTTGTGAAGATCATCAGACCAAGTGAGACTGCAGGAAGATATGTAACTTACAGATATGTTGTCTGAGTATACTTATGATTATGCAATTGAAGATGTGACATATAAATACAGCTTGAAGTTATTTTTTCTAGTCTTAATCAGTGTTAATGGTTGTGATATGATATCTCTGAGGTGAGGTGAGTTGAAGAAGAATTTAGGAATTTTTGTATTTGGGATTTAGTTGTGGTGGTGTACACTAGTAGATTTTTATAAACATGACGACATTGGAAGATTCAATTATTTCCATTTAAGGACTCCTTTAGTTTTTGTAAATTATCCCTATGGAGTGCAAATTTAGAAATAGCCATCTTTAAATCAAAA

mRNA sequence

ATGAAAGGAGGACCTTGGGATTCTCTAAGGCATTCCTTTTGGGAGGGATCGTTGATTCCTTTTGGGGGAGAATTCCACATTTCTTGGGAGACACTTCTTCGGAGGAAGTTCAACCTTGCAAGCTCAGGAAATCAAGTTGGGATATGTAGTAGTCCATCAGAGTGGAGTTTTGATGGAAGGAAAGAGAAAGCCCTAAACCCTTCTTTCATCTTCCTTGCTCCACCATCTTCTTCTTCACGCCGGCTCCTCCTCCTCCCTCTCAGCAGCCCAGTGTCGCCGCCCTCGCCCCACGTAGAAGCTTGCACCGATTTCTTGTTGTTACTGTTAATGAGCATTGAATTGTTTGACAATGAATTAGCCACAAACAAGATGGTGCTATCAGAGGAGGAAATCACCAGGCTTTTCAGAATTCGAAAAACTGTGTTTCAAATGCTAAAAGACCGAGGCTATTTTGTTGGAGACTTTGAGATTGATATGACAAGGGAGCAGTTTAAGCATAAATATGGTGAAAGCATGAAAAGAGAAGATATTGTTATTAATAAAGCCAAGAGAAATGATAGCTCTGACCAGATATACGTGTTCTTTCCAGAAGAACCAAAGGTCGGCGTCAAGACAATTAAAACATATACCCAACGCATGAACTCAGAGAATGTTTATAGAGCAATATTGGTCGTTCAACAGAATTTGACCCCTTTCGCTCGTACCTGTATAAATGAAGTAATATCTACCAAAGTACACTTGGAAGTTTTCCAGGAAGCAGAATTGCTAGTTAATATCAAAGAACACGTTCTTGTTCCTGAGCACCAGTTACTTACCAATGAAGAGAAGAAGACACTACTGGAGAGATATACCGTGAAAGAAACACAGCTACCACGCATACAGGTGACTGACCCGGTTGCAAGATATTACGGGCTAAAGCGTGGACAAGTTGTGAAGATCATCAGACCAAGTGAGACTGCAGGAAGATATGTAACTTACAGATATGTTGTCTGAGTATACTTATGATTATGCAATTGAAGATGTGACATATAAATACAGCTTGAAGTTATTTTTTCTAGTCTTAATCAGTGTTAATGGTTGTGATATGATATCTCTGAGGTGAGGTGAGTTGAAGAAGAATTTAGGAATTTTTGTATTTGGGATTTAGTTGTGGTGGTGTACACTAGTAGATTTTTATAAACATGACGACATTGGAAGATTCAATTATTTCCATTTAAGGACTCCTTTAGTTTTTGTAAATTATCCCTATGGAGTGCAAATTTAGAAATAGCCATCTTTAAATCAAAA

Coding sequence (CDS)

ATGAAAGGAGGACCTTGGGATTCTCTAAGGCATTCCTTTTGGGAGGGATCGTTGATTCCTTTTGGGGGAGAATTCCACATTTCTTGGGAGACACTTCTTCGGAGGAAGTTCAACCTTGCAAGCTCAGGAAATCAAGTTGGGATATGTAGTAGTCCATCAGAGTGGAGTTTTGATGGAAGGAAAGAGAAAGCCCTAAACCCTTCTTTCATCTTCCTTGCTCCACCATCTTCTTCTTCACGCCGGCTCCTCCTCCTCCCTCTCAGCAGCCCAGTGTCGCCGCCCTCGCCCCACGTAGAAGCTTGCACCGATTTCTTGTTGTTACTGTTAATGAGCATTGAATTGTTTGACAATGAATTAGCCACAAACAAGATGGTGCTATCAGAGGAGGAAATCACCAGGCTTTTCAGAATTCGAAAAACTGTGTTTCAAATGCTAAAAGACCGAGGCTATTTTGTTGGAGACTTTGAGATTGATATGACAAGGGAGCAGTTTAAGCATAAATATGGTGAAAGCATGAAAAGAGAAGATATTGTTATTAATAAAGCCAAGAGAAATGATAGCTCTGACCAGATATACGTGTTCTTTCCAGAAGAACCAAAGGTCGGCGTCAAGACAATTAAAACATATACCCAACGCATGAACTCAGAGAATGTTTATAGAGCAATATTGGTCGTTCAACAGAATTTGACCCCTTTCGCTCGTACCTGTATAAATGAAGTAATATCTACCAAAGTACACTTGGAAGTTTTCCAGGAAGCAGAATTGCTAGTTAATATCAAAGAACACGTTCTTGTTCCTGAGCACCAGTTACTTACCAATGAAGAGAAGAAGACACTACTGGAGAGATATACCGTGAAAGAAACACAGCTACCACGCATACAGGTGACTGACCCGGTTGCAAGATATTACGGGCTAAAGCGTGGACAAGTTGTGAAGATCATCAGACCAAGTGAGACTGCAGGAAGATATGTAACTTACAGATATGTTGTCTGA

Protein sequence

MKGGPWDSLRHSFWEGSLIPFGGEFHISWETLLRRKFNLASSGNQVGICSSPSEWSFDGRKEKALNPSFIFLAPPSSSSRRLLLLPLSSPVSPPSPHVEACTDFLLLLLMSIELFDNELATNKMVLSEEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGESMKREDIVINKAKRNDSSDQIYVFFPEEPKVGVKTIKTYTQRMNSENVYRAILVVQQNLTPFARTCINEVISTKVHLEVFQEAELLVNIKEHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV

Homology

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BLAST of Cla97C09G170540 vs. NCBI nr
Match: KAA0059617.1 (DNA-directed RNA polymerases II and IV subunit 5A [Cucumis melo var. makuwa] >TYK08150.1 DNA-directed RNA polymerases II and IV subunit 5A [Cucumis melo var. makuwa])

HSP 1 Score: 387.5 bits (994), Expect = 1.2e-103
Identity = 199/221 (90.05%), Postives = 208/221 (94.12%), Query Frame = 0


Query: 110 MSIELFDNELATNKMVLSEEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYG 169
           M IELFDNELA NKMVLSEEEITRLFRIRKTVFQML+DRGYFVGDFEIDMTREQFK KYG
Sbjct: 1   MRIELFDNELAWNKMVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYG 60

Query: 170 ESMKREDIVINKAKRNDSSDQIYVFFPEEPKVGVKTIKTYTQRMNSENVYRAILVVQQNL 229
           E+MKREDIVINK+KRNDSSDQIYVFFPEE KVG+K +KTYT RM SENV+RAILVVQQNL
Sbjct: 61  ENMKREDIVINKSKRNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNL 120

Query: 230 TPFARTCINEVISTKVHLEVFQEAELLVNIKEHVLVPEHQLLTNEEKKTLLERYTVKETQ 289
           TPFAR C++E  S   HLEVFQEAELLVNIK+HVLVPEHQLLTNEEKKTLLERYTVKETQ
Sbjct: 121 TPFARACMSEATSKSFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQ 180

Query: 290 LPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV 331
           LPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV 221

[Close]

BLAST of Cla97C09G170540 vs. NCBI nr
Match: XP_022991826.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima] >XP_023547519.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 372.9 bits (956), Expect = 2.9e-99
Identity = 193/207 (93.24%), Postives = 201/207 (97.10%), Query Frame = 0


Query: 124 MVLSEEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGESMKREDIVINKAK 183
           MVLSEEEITRLFRIRKTV QMLKDRGYFVGDFEIDM+REQFKHKYGESMKREDIVINKAK
Sbjct: 1   MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAK 60

Query: 184 RNDSSDQIYVFFPEEPKVGVKTIKTYTQRMNSENVYRAILVVQQNLTPFARTCINEVIST 243
           RNDSSDQIYVFFPEE KVGVKT+KTYT RM +ENV+RAILVVQQNLTPFARTCI+E IS+
Sbjct: 61  RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAILVVQQNLTPFARTCISE-ISS 120

Query: 244 KVHLEVFQEAELLVNIKEHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 303
           K HLEVFQEAELLVN+K+HVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY
Sbjct: 121 KFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180

Query: 304 GLKRGQVVKIIRPSETAGRYVTYRYVV 331
           GLKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Cla97C09G170540 vs. NCBI nr
Match: XP_022959553.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata] >XP_022959554.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata] >XP_022959555.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata] >XP_023004795.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima] >XP_023004796.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima] >XP_023004797.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima] >XP_023513561.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita pepo subsp. pepo] >XP_023513563.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 372.5 bits (955), Expect = 3.8e-99
Identity = 191/207 (92.27%), Postives = 202/207 (97.58%), Query Frame = 0


Query: 124 MVLSEEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGESMKREDIVINKAK 183
           MVL+EEEITRLFR+RKTV QMLKDRGYFVGDFE+DM+REQFK+KYGESMKREDIVINKAK
Sbjct: 1   MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAK 60

Query: 184 RNDSSDQIYVFFPEEPKVGVKTIKTYTQRMNSENVYRAILVVQQNLTPFARTCINEVIST 243
           RNDSSDQIY+FFPEEPKVGVKT+KTYT RM SENV+RAILVVQQNLTPFARTCI+E IST
Sbjct: 61  RNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISE-IST 120

Query: 244 KVHLEVFQEAELLVNIKEHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 303
           K HLEVFQEAELLVNIK+HVLVPEHQLL+NEEKKTLLERYTVKETQLPRIQVTDPVARYY
Sbjct: 121 KFHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180

Query: 304 GLKRGQVVKIIRPSETAGRYVTYRYVV 331
           GLKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Cla97C09G170540 vs. NCBI nr
Match: XP_038899369.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Benincasa hispida] >XP_038899370.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Benincasa hispida])

HSP 1 Score: 372.5 bits (955), Expect = 3.8e-99
Identity = 196/207 (94.69%), Postives = 199/207 (96.14%), Query Frame = 0


Query: 124 MVLSEEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGESMKREDIVINKAK 183
           MVLSEEEITRLFRIRKTVFQML+DRGYFVGDFEIDMTREQFKHKYGESMKREDIVINKAK
Sbjct: 1   MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKHKYGESMKREDIVINKAK 60

Query: 184 RNDSSDQIYVFFPEEPKVGVKTIKTYTQRMNSENVYRAILVVQQNLTPFARTCINEVIST 243
           RNDSSDQIYVFFPEE KVGVKT+KTYT RM SENV RAILVVQQNLTPFART I+EV ST
Sbjct: 61  RNDSSDQIYVFFPEEQKVGVKTLKTYTSRMKSENVSRAILVVQQNLTPFARTSISEV-ST 120

Query: 244 KVHLEVFQEAELLVNIKEHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 303
           K HLEVFQEAELLVNIKEHVLVPEHQLL NEEKKTLLERYTVKETQLPRIQVTDPVARYY
Sbjct: 121 KFHLEVFQEAELLVNIKEHVLVPEHQLLANEEKKTLLERYTVKETQLPRIQVTDPVARYY 180

Query: 304 GLKRGQVVKIIRPSETAGRYVTYRYVV 331
           GLKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Cla97C09G170540 vs. NCBI nr
Match: XP_022953770.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata])

HSP 1 Score: 372.5 bits (955), Expect = 3.8e-99
Identity = 192/207 (92.75%), Postives = 201/207 (97.10%), Query Frame = 0


Query: 124 MVLSEEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGESMKREDIVINKAK 183
           MVLSEEEITRLFRIRKTV QMLKDRGYFVGDFEIDM+REQFKHKYGESMKRED+VINKAK
Sbjct: 1   MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDVVINKAK 60

Query: 184 RNDSSDQIYVFFPEEPKVGVKTIKTYTQRMNSENVYRAILVVQQNLTPFARTCINEVIST 243
           RNDSSDQIYVFFPEE KVGVKT+KTYT RM +ENV+RAILVVQQNLTPFARTCI+E IS+
Sbjct: 61  RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAILVVQQNLTPFARTCISE-ISS 120

Query: 244 KVHLEVFQEAELLVNIKEHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 303
           K HLEVFQEAELLVN+K+HVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY
Sbjct: 121 KFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180

Query: 304 GLKRGQVVKIIRPSETAGRYVTYRYVV 331
           GLKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Cla97C09G170540 vs. ExPASy Swiss-Prot
Match: O81098 (DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana OX=3702 GN=NRPB5A PE=1 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 9.2e-88
Identity = 163/206 (79.13%), Postives = 190/206 (92.23%), Query Frame = 0


Query: 125 VLSEEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGESMKREDIVINKAKR 184
           +L+EEE+ RL+RI+KT+ QML+DRGYF+ D E+ MT++QF  K+G++MKRED+V  KAKR
Sbjct: 1   MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKR 60

Query: 185 NDSSDQIYVFFPEEPKVGVKTIKTYTQRMNSENVYRAILVVQQNLTPFARTCINEVISTK 244
           ND+SDQ+Y+FFP+E KVGVKT+K YT RM SENV+RAILVVQQNLTPFARTCI+E IS+K
Sbjct: 61  NDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISE-ISSK 120

Query: 245 VHLEVFQEAELLVNIKEHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 304
            HLEVFQEAE+LVNIKEHVLVPEHQ+LT EEKKTLLERYTVKETQLPRIQVTDP+ARY+G
Sbjct: 121 FHLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFG 180

Query: 305 LKRGQVVKIIRPSETAGRYVTYRYVV 331
           LKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 205

[Close]

BLAST of Cla97C09G170540 vs. ExPASy Swiss-Prot
Match: Q80UW8 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus OX=10090 GN=Polr2e PE=1 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 8.4e-57
Identity = 116/207 (56.04%), Postives = 152/207 (73.43%), Query Frame = 0


Query: 128 EEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGES-----MKREDIVINKA 187
           EEE  RL++IRKT+ Q+  DRGY V   E+D T E+FK ++G+       +R D+ +  A
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 188 KRNDSSDQIYVFFPEEPKVGVKTIKTYTQRMNSENVYRAILVVQQNLTPFARTCINEVIS 247
             +D +DQ++VFFPEEPKVG+KTIK Y QRM  EN+ RA++VVQQ +TP A+  + + ++
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVD-MA 123

Query: 248 TKVHLEVFQEAELLVNIKEHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARY 307
            K  LE F + ELL+NI EH LVPEH ++T EE   LL RY ++E+QLPRIQ  DPVARY
Sbjct: 124 PKYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARY 183

Query: 308 YGLKRGQVVKIIRPSETAGRYVTYRYV 330
           +G+KRGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 FGIKRGQVVKIIRPSETAGRYITYRLV 209

[Close]

BLAST of Cla97C09G170540 vs. ExPASy Swiss-Prot
Match: B0BNE2 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Rattus norvegicus OX=10116 GN=Polr2e PE=2 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 8.4e-57
Identity = 116/207 (56.04%), Postives = 152/207 (73.43%), Query Frame = 0


Query: 128 EEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGES-----MKREDIVINKA 187
           EEE  RL++IRKT+ Q+  DRGY V   E+D T E+FK ++G+       +R D+ +  A
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 188 KRNDSSDQIYVFFPEEPKVGVKTIKTYTQRMNSENVYRAILVVQQNLTPFARTCINEVIS 247
             +D +DQ++VFFPEEPKVG+KTIK Y QRM  EN+ RA++VVQQ +TP A+  + + ++
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVD-MA 123

Query: 248 TKVHLEVFQEAELLVNIKEHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARY 307
            K  LE F + ELL+NI EH LVPEH ++T EE   LL RY ++E+QLPRIQ  DPVARY
Sbjct: 124 PKYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARY 183

Query: 308 YGLKRGQVVKIIRPSETAGRYVTYRYV 330
           +G+KRGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 FGIKRGQVVKIIRPSETAGRYITYRLV 209

[Close]

BLAST of Cla97C09G170540 vs. ExPASy Swiss-Prot
Match: Q5R587 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo abelii OX=9601 GN=POLR2E PE=2 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 2.4e-56
Identity = 115/207 (55.56%), Postives = 151/207 (72.95%), Query Frame = 0


Query: 128 EEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGES-----MKREDIVINKA 187
           EEE  RL++IRKT+ Q+  DRGY V   E+D T E+F+ ++G+       +R D+ +  A
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTVLVA 63

Query: 188 KRNDSSDQIYVFFPEEPKVGVKTIKTYTQRMNSENVYRAILVVQQNLTPFARTCINEVIS 247
             +D +DQ++VFFPEEPKVG+KTIK Y QRM  EN+ RA++VVQQ +TP A+  + + ++
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVD-MA 123

Query: 248 TKVHLEVFQEAELLVNIKEHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARY 307
            K  LE F + ELL+NI EH LVPEH ++T EE   LL RY ++E QLPRIQ  DPVARY
Sbjct: 124 PKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARY 183

Query: 308 YGLKRGQVVKIIRPSETAGRYVTYRYV 330
           +G+KRGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 FGIKRGQVVKIIRPSETAGRYITYRLV 209

[Close]

BLAST of Cla97C09G170540 vs. ExPASy Swiss-Prot
Match: P19388 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Homo sapiens OX=9606 GN=POLR2E PE=1 SV=4)

HSP 1 Score: 219.9 bits (559), Expect = 4.2e-56
Identity = 116/207 (56.04%), Postives = 150/207 (72.46%), Query Frame = 0


Query: 128 EEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGES-----MKREDIVINKA 187
           EEE  RL++IRKT+ Q+  DRGY V   E+D T E+FK + G+       +R D+ +  A
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDLTVLVA 63

Query: 188 KRNDSSDQIYVFFPEEPKVGVKTIKTYTQRMNSENVYRAILVVQQNLTPFARTCINEVIS 247
             +D +DQ++VFFPEEPKVG+KTIK Y QRM  EN+ RA++VVQQ +TP A+  + + ++
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVD-MA 123

Query: 248 TKVHLEVFQEAELLVNIKEHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARY 307
            K  LE F + ELL+NI EH LVPEH ++T EE   LL RY ++E QLPRIQ  DPVARY
Sbjct: 124 PKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARY 183

Query: 308 YGLKRGQVVKIIRPSETAGRYVTYRYV 330
           +G+KRGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 FGIKRGQVVKIIRPSETAGRYITYRLV 209

[Close]

BLAST of Cla97C09G170540 vs. ExPASy TrEMBL
Match: A0A5D3C9X8 (DNA-directed RNA polymerases II and IV subunit 5A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold886G00310 PE=3 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 5.6e-104
Identity = 199/221 (90.05%), Postives = 208/221 (94.12%), Query Frame = 0


Query: 110 MSIELFDNELATNKMVLSEEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYG 169
           M IELFDNELA NKMVLSEEEITRLFRIRKTVFQML+DRGYFVGDFEIDMTREQFK KYG
Sbjct: 1   MRIELFDNELAWNKMVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYG 60

Query: 170 ESMKREDIVINKAKRNDSSDQIYVFFPEEPKVGVKTIKTYTQRMNSENVYRAILVVQQNL 229
           E+MKREDIVINK+KRNDSSDQIYVFFPEE KVG+K +KTYT RM SENV+RAILVVQQNL
Sbjct: 61  ENMKREDIVINKSKRNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNL 120

Query: 230 TPFARTCINEVISTKVHLEVFQEAELLVNIKEHVLVPEHQLLTNEEKKTLLERYTVKETQ 289
           TPFAR C++E  S   HLEVFQEAELLVNIK+HVLVPEHQLLTNEEKKTLLERYTVKETQ
Sbjct: 121 TPFARACMSEATSKSFHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQ 180

Query: 290 LPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV 331
           LPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV 221

[Close]

BLAST of Cla97C09G170540 vs. ExPASy TrEMBL
Match: A0A6J1JRV4 (DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita maxima OX=3661 GN=LOC111488357 PE=3 SV=1)

HSP 1 Score: 372.9 bits (956), Expect = 1.4e-99
Identity = 193/207 (93.24%), Postives = 201/207 (97.10%), Query Frame = 0


Query: 124 MVLSEEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGESMKREDIVINKAK 183
           MVLSEEEITRLFRIRKTV QMLKDRGYFVGDFEIDM+REQFKHKYGESMKREDIVINKAK
Sbjct: 1   MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAK 60

Query: 184 RNDSSDQIYVFFPEEPKVGVKTIKTYTQRMNSENVYRAILVVQQNLTPFARTCINEVIST 243
           RNDSSDQIYVFFPEE KVGVKT+KTYT RM +ENV+RAILVVQQNLTPFARTCI+E IS+
Sbjct: 61  RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAILVVQQNLTPFARTCISE-ISS 120

Query: 244 KVHLEVFQEAELLVNIKEHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 303
           K HLEVFQEAELLVN+K+HVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY
Sbjct: 121 KFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180

Query: 304 GLKRGQVVKIIRPSETAGRYVTYRYVV 331
           GLKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Cla97C09G170540 vs. ExPASy TrEMBL
Match: A0A6J1KT45 (DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita maxima OX=3661 GN=LOC111497988 PE=3 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 1.9e-99
Identity = 191/207 (92.27%), Postives = 202/207 (97.58%), Query Frame = 0


Query: 124 MVLSEEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGESMKREDIVINKAK 183
           MVL+EEEITRLFR+RKTV QMLKDRGYFVGDFE+DM+REQFK+KYGESMKREDIVINKAK
Sbjct: 1   MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAK 60

Query: 184 RNDSSDQIYVFFPEEPKVGVKTIKTYTQRMNSENVYRAILVVQQNLTPFARTCINEVIST 243
           RNDSSDQIY+FFPEEPKVGVKT+KTYT RM SENV+RAILVVQQNLTPFARTCI+E IST
Sbjct: 61  RNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISE-IST 120

Query: 244 KVHLEVFQEAELLVNIKEHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 303
           K HLEVFQEAELLVNIK+HVLVPEHQLL+NEEKKTLLERYTVKETQLPRIQVTDPVARYY
Sbjct: 121 KFHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180

Query: 304 GLKRGQVVKIIRPSETAGRYVTYRYVV 331
           GLKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Cla97C09G170540 vs. ExPASy TrEMBL
Match: A0A6J1H699 (DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita moschata OX=3662 GN=LOC111460591 PE=3 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 1.9e-99
Identity = 191/207 (92.27%), Postives = 202/207 (97.58%), Query Frame = 0


Query: 124 MVLSEEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGESMKREDIVINKAK 183
           MVL+EEEITRLFR+RKTV QMLKDRGYFVGDFE+DM+REQFK+KYGESMKREDIVINKAK
Sbjct: 1   MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAK 60

Query: 184 RNDSSDQIYVFFPEEPKVGVKTIKTYTQRMNSENVYRAILVVQQNLTPFARTCINEVIST 243
           RNDSSDQIY+FFPEEPKVGVKT+KTYT RM SENV+RAILVVQQNLTPFARTCI+E IST
Sbjct: 61  RNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISE-IST 120

Query: 244 KVHLEVFQEAELLVNIKEHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 303
           K HLEVFQEAELLVNIK+HVLVPEHQLL+NEEKKTLLERYTVKETQLPRIQVTDPVARYY
Sbjct: 121 KFHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180

Query: 304 GLKRGQVVKIIRPSETAGRYVTYRYVV 331
           GLKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Cla97C09G170540 vs. ExPASy TrEMBL
Match: A0A6J1GQK9 (DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita moschata OX=3662 GN=LOC111456196 PE=3 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 1.9e-99
Identity = 192/207 (92.75%), Postives = 201/207 (97.10%), Query Frame = 0


Query: 124 MVLSEEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGESMKREDIVINKAK 183
           MVLSEEEITRLFRIRKTV QMLKDRGYFVGDFEIDM+REQFKHKYGESMKRED+VINKAK
Sbjct: 1   MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDVVINKAK 60

Query: 184 RNDSSDQIYVFFPEEPKVGVKTIKTYTQRMNSENVYRAILVVQQNLTPFARTCINEVIST 243
           RNDSSDQIYVFFPEE KVGVKT+KTYT RM +ENV+RAILVVQQNLTPFARTCI+E IS+
Sbjct: 61  RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAILVVQQNLTPFARTCISE-ISS 120

Query: 244 KVHLEVFQEAELLVNIKEHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 303
           K HLEVFQEAELLVN+K+HVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY
Sbjct: 121 KFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180

Query: 304 GLKRGQVVKIIRPSETAGRYVTYRYVV 331
           GLKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Cla97C09G170540 vs. TAIR 10
Match: AT3G22320.1 (Eukaryotic rpb5 RNA polymerase subunit family protein )

HSP 1 Score: 325.1 bits (832), Expect = 6.5e-89
Identity = 163/206 (79.13%), Postives = 190/206 (92.23%), Query Frame = 0


Query: 125 VLSEEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGESMKREDIVINKAKR 184
           +L+EEE+ RL+RI+KT+ QML+DRGYF+ D E+ MT++QF  K+G++MKRED+V  KAKR
Sbjct: 1   MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKR 60

Query: 185 NDSSDQIYVFFPEEPKVGVKTIKTYTQRMNSENVYRAILVVQQNLTPFARTCINEVISTK 244
           ND+SDQ+Y+FFP+E KVGVKT+K YT RM SENV+RAILVVQQNLTPFARTCI+E IS+K
Sbjct: 61  NDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISE-ISSK 120

Query: 245 VHLEVFQEAELLVNIKEHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 304
            HLEVFQEAE+LVNIKEHVLVPEHQ+LT EEKKTLLERYTVKETQLPRIQVTDP+ARY+G
Sbjct: 121 FHLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFG 180

Query: 305 LKRGQVVKIIRPSETAGRYVTYRYVV 331
           LKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 205

[Close]

BLAST of Cla97C09G170540 vs. TAIR 10
Match: AT5G57980.1 (RNA polymerase II fifth largest subunit, C )

HSP 1 Score: 178.3 bits (451), Expect = 9.9e-45
Identity = 97/207 (46.86%), Postives = 146/207 (70.53%), Query Frame = 0


Query: 128 EEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGESM---KREDIVINKAKR 187
           ++EITR+F++R+TV QML+DRGY + + ++++ RE+F  ++ ++M    +E + ++  K 
Sbjct: 5   DDEITRIFKVRRTVLQMLRDRGYTIEESDLNLKREEFVQRFCKTMNKVNKEALFVSANKG 64

Query: 188 NDSSDQIYVFFPEEPKVGVKTIKTYTQ-RMNSENVYRAILVVQQNLTPFARTCINEVIST 247
            + +D+IYVF+PE PKVGV  IK     +M  + V+R I+VV   +T  AR  ++E ++ 
Sbjct: 65  PNPADKIYVFYPEGPKVGVPVIKKEVAIKMRDDKVHRGIVVVPMAITAPARMAVSE-LNK 124

Query: 248 KVHLEVFQEAELLVNIKEHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYY 307
            + +EVF+EAEL+ NI EH LV ++ +L ++ KK LL  YTV++TQLPRI VTDP+ARYY
Sbjct: 125 MLTIEVFEEAELVTNITEHKLVNKYYVLDDQAKKKLLNTYTVQDTQLPRILVTDPLARYY 184

Query: 308 GLKRGQVVKIIRPSETAGRYVTYRYVV 331
           GLKRGQVVKI R   T+  Y TYR+ V
Sbjct: 185 GLKRGQVVKIRRSDATSLDYYTYRFAV 210

[Close]

BLAST of Cla97C09G170540 vs. TAIR 10
Match: AT2G41340.1 (RNA polymerase II fifth largest subunit, D )

HSP 1 Score: 130.6 bits (327), Expect = 2.4e-30
Identity = 79/204 (38.73%), Postives = 128/204 (62.75%), Query Frame = 0


Query: 127 SEEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGESMKREDIVINKAKRND 186
           S  E  + +  R+T  +ML+DRGY V D +I+++ +QF+  YGE    + + I+   R D
Sbjct: 17  SSVECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPDVDLLRISAKHRFD 76

Query: 187 SSDQIYVFFPEEPKVGVKTIKTY-TQRMNSENVYRAILVVQQNLTPFARTCINEVISTKV 246
           SS +I V F     V V  ++      ++ EN+   ILV+Q ++T  A   + E+ S KV
Sbjct: 77  SSKKISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKAV-ELFSFKV 136

Query: 247 HLEVFQEAELLVNIKEHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYGL 306
             E+F+  +LLVN+ +HVL P+HQ+L ++EK++LL++++++E QLPR+   DP+ RYYGL
Sbjct: 137 --ELFEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQLPRLSSKDPIVRYYGL 196

Query: 307 KRGQVVKIIRPSETAGRYVTYRYV 330
           + GQV+K+    E +  +VTYR V
Sbjct: 197 ETGQVMKVTYKDELSESHVTYRCV 217

[Close]

BLAST of Cla97C09G170540 vs. TAIR 10
Match: AT3G57080.1 (Eukaryotic rpb5 RNA polymerase subunit family protein )

HSP 1 Score: 129.0 bits (323), Expect = 6.9e-30
Identity = 81/205 (39.51%), Postives = 124/205 (60.49%), Query Frame = 0


Query: 126 LSEEEITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGESMKREDIVINKAKRN 185
           LS EE  R +  R+   QML+DRGY V D +I+++   F+  YGE    + + I+   R+
Sbjct: 20  LSSEESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLRISALHRS 79

Query: 186 DSSDQIYVFFPEEPKVGVKTIKT-YTQRMNSENVYRAILVVQQNLTPFARTCINEVISTK 245
           DS+ ++ + F     V V  I++     ++ E +   ILV+Q ++T  A   I E+ S K
Sbjct: 80  DSTKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAI-ELFSFK 139

Query: 246 VHLEVFQEAELLVNIKEHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 305
           V  E+FQ  +LLVNI +H L P+HQ+L +EEK TLL++++++E QLPRI   D + RYYG
Sbjct: 140 V--EIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRISKKDAIVRYYG 199

Query: 306 LKRGQVVKIIRPSETAGRYVTYRYV 330
           L++GQVVK+    E    +V +R V
Sbjct: 200 LEKGQVVKVNYRGELTESHVAFRCV 221

[Close]

BLAST of Cla97C09G170540 vs. TAIR 10
Match: AT3G54490.1 (RNA polymerase II fifth largest subunit, E )

HSP 1 Score: 120.2 bits (300), Expect = 3.2e-27
Identity = 72/202 (35.64%), Postives = 115/202 (56.93%), Query Frame = 0


Query: 130 EITRLFRIRKTVFQMLKDRGYFVGDFEIDMTREQFKHKYGESMKREDIVINKAKRNDSSD 189
           E  R +  R T F+ML+DRGY V + E+ +T  +F+  +GE  + E + I    R+D   
Sbjct: 35  ESKRFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGEKPELERLRICVPLRSDPKK 94

Query: 190 QIYVFFPEEPKVGVKTIKT-YTQRMNSENVYRAILVVQQNLTPFARTCINEVISTKVHLE 249
           +I V F     + VK+++  + Q  N+  ++  ILV+Q  +  FA+  +     T   +E
Sbjct: 95  KILVVFMGTEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKALTTFPFT---VE 154

Query: 250 VFQEAELLVNIKEHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRG 309
            F   +LLVNI +H+  P+ ++L  EEK+ LL ++ +++ QLP +Q  D   RYYGLK+ 
Sbjct: 155 TFPIEDLLVNITKHIQQPKIEILNKEEKEQLLRKHALEDKQLPYLQEKDSFVRYYGLKKK 214

Query: 310 QVVKIIRPSETAGRYVTYRYVV 331
           QVVKI    E  G +VTYR ++
Sbjct: 215 QVVKITYSKEPVGDFVTYRCII 233

The following BLAST results are available for this feature:

BLAST of Cla97C09G170540 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0059617.1	1.2e-103	90.05	DNA-directed RNA polymerases II and IV subunit 5A [Cucumis melo var. makuwa] >TY...	[more]
XP_022991826.1	2.9e-99	93.24	DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima] >XP_02...	[more]
XP_022959553.1	3.8e-99	92.27	DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata] >XP_...	[more]
XP_038899369.1	3.8e-99	94.69	DNA-directed RNA polymerases II and IV subunit 5A-like [Benincasa hispida] >XP_0...	[more]
XP_022953770.1	3.8e-99	92.75	DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata]	[more]

BLAST of Cla97C09G170540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O81098	9.2e-88	79.13	DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana OX=370...	[more]
Q80UW8	8.4e-57	56.04	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus OX=10...	[more]
B0BNE2	8.4e-57	56.04	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Rattus norvegicus ...	[more]
Q5R587	2.4e-56	55.56	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo abelii OX=96...	[more]
P19388	4.2e-56	56.04	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Homo sapiens OX=96...	[more]

BLAST of Cla97C09G170540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C9X8	5.6e-104	90.05	DNA-directed RNA polymerases II and IV subunit 5A OS=Cucumis melo var. makuwa OX...	[more]
A0A6J1JRV4	1.4e-99	93.24	DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita maxima OX=36...	[more]
A0A6J1KT45	1.9e-99	92.27	DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita maxima OX=36...	[more]
A0A6J1H699	1.9e-99	92.27	DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita moschata OX=...	[more]
A0A6J1GQK9	1.9e-99	92.75	DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita moschata OX=...	[more]

BLAST of Cla97C09G170540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G22320.1	6.5e-89	79.13	Eukaryotic rpb5 RNA polymerase subunit family protein	[more]
AT5G57980.1	9.9e-45	46.86	RNA polymerase II fifth largest subunit, C	[more]
AT2G41340.1	2.4e-30	38.73	RNA polymerase II fifth largest subunit, D	[more]
AT3G57080.1	6.9e-30	39.51	Eukaryotic rpb5 RNA polymerase subunit family protein	[more]
AT3G54490.1	3.2e-27	35.64	RNA polymerase II fifth largest subunit, E	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036710	RNA polymerase Rpb5, N-terminal domain superfamily	GENE3D	3.40.1340.10		coord: 126..254 e-value: 4.1E-47 score: 161.7
IPR036710	RNA polymerase Rpb5, N-terminal domain superfamily	SUPERFAMILY	53036	Eukaryotic RPB5 N-terminal domain	coord: 128..258
IPR005571	RNA polymerase, Rpb5, N-terminal	PFAM	PF03871	RNA_pol_Rpb5_N	coord: 128..213 e-value: 5.3E-32 score: 110.3
IPR035913	RPB5-like RNA polymerase subunit superfamily	GENE3D	3.90.940.20		coord: 255..330 e-value: 7.7E-35 score: 120.4
IPR035913	RPB5-like RNA polymerase subunit superfamily	SUPERFAMILY	55287	RPB5-like RNA polymerase subunit	coord: 255..330
IPR000783	RNA polymerase, subunit H/Rpb5 C-terminal	PFAM	PF01191	RNA_pol_Rpb5_C	coord: 257..329 e-value: 1.5E-34 score: 117.7
None	No IPR available	PANTHER	PTHR10535:SF17	DNA-DIRECTED RNA POLYMERASES II AND IV SUBUNIT 5A-LIKE	coord: 124..330
IPR039531	DNA-directed RNA polymerase subunit Rpb5-like	PANTHER	PTHR10535	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1	coord: 124..330
IPR020608	RNA polymerase, subunit H/Rpb5, conserved site	PROSITE	PS01110	RNA_POL_H_23KD	coord: 262..275
IPR020609	Archaeal RpoH /eukaryotic RPB5 RNA polymerase subunit	HAMAP	MF_00025	RNApol_RpoH_RPB5	coord: 257..330 score: 22.860451

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C09G170540.2	Cla97C09G170540.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005736	RNA polymerase I complex
cellular_component	GO:0005665	RNA polymerase II, core complex
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity