Cla97C09G163715 (gene) Watermelon (97103) v2.5

Overview
NameCla97C09G163715
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionGATA transcription factor 24-like isoform X1
LocationCla97Chr09: 1422623 .. 1423619 (+)
RNA-Seq ExpressionCla97C09G163715
SyntenyCla97C09G163715
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAATGCACCATCAGAATAAAGTTTCATCAAAGAGTATAACTCTCTTCAAGTTATGAAAACTGAAAAGATAAGAACTTCTTTTTAACTTCCTGAAGACTTCGGAGCTGAACCTCCAAGAAGACTCCAAACACTAAAAATTTTATTCAATGTTCAAGAAAAAACATCAGAGGATTATATATTAGAGATTATCCTCACTATTTAATACAAACTCAAAAAATTGAAGTGTCAACTGAGGGCCTTAGGCCTATTAGACAATTAGGGGTCTTTTTCTTCTAAGCAAGCACATGACTCAGAAAATGATATGCTGCATTTAGCTGCTCTGCTTTTCGCCTTAGCAATTCTTTTCTTGAAGGCTGTTAGGCAGTGAACAGCCCAATATGTTTTTGTTTCTATTACCTCTAATTTGTATCGCCGTGGACTGTTAAGGGAACTCTCCGGGACCTCTCTAAAGCTCCAAATCAGGGTGGACAAACTGCAACCTTCAATAGAAATGAGGTGAAGCGTCGATTATTTTGTCTTTTGATTTACTATAGTTTTTGTAGTCGTTAAAATTTCGTGTTCTCACTGCCCGTTACGTCAATAATTCAAAATTTGTTTTAGAATGCTGTGCAGAATGGAGATTCTGAGTCGAACCCAAAAGGTGTTTAGAATTGTGACAGATGTTTATGATTGCTGTTCCGGAATTTAGCAAAAATCATCCATCTCTCCTACAGAGATTAGTTTGAAACGGGTTAGTCAACATTTGACAGATTTAAAATTTCACTGATGGCTATGAATATTCACACCCATCGACAGAGAAATCCTTGTATCTTCTAAGCTGGCCAATGCATCTTGGGATCAAGGGCACCGTGCGCGCGTACTAATTTATTAGCCTTTTCTTTTATCATATTGCGAACCATTTCAAATTGTTAATTCCTAGAATCTTGTATATTATCATTCCTGCTGGTGTACAATGAACGGTTTTTTCTTAATCCAAGTTTCTTTTTGTCTTGC

mRNA sequence

ATGGGAATGCACCATCAGAATAAAGTTTCATCAAAGACCCAATATGTTTTTGTTTCTATTACCTCTAATTTGTATCGCCGTGGACTGTTAAGGGAACTCTCCGGGACCTCTCTAAAGCTCCAAATCAGGGTGGACAAACTGCAACCTTCAATAGAAATGAGAATGCTGTGCAGAATGGAGATTCTGAGTCGAACCCAAAAGGTGTTTAGAATTGTGACAGATGTTTATGATTGCTGTTCCGGAATTTAGCAAAAATCATCCATCTCTCCTACAGAGATTAGTTTGAAACGGGTTAGTCAACATTTGACAGATTTAAAATTTCACTGATGGCTATGAATATTCACACCCATCGACAGAGAAATCCTTGTATCTTCTAAGCTGGCCAATGCATCTTGGGATCAAGGGCACCGTGCGCGCGTACTAATTTATTAGCCTTTTCTTTTATCATATTGCGAACCATTTCAAATTGTTAATTCCTAGAATCTTGTATATTATCATTCCTGCTGGTGTACAATGAACGGTTTTTTCTTAATCCAAGTTTCTTTTTGTCTTGC

Coding sequence (CDS)

ATGGGAATGCACCATCAGAATAAAGTTTCATCAAAGACCCAATATGTTTTTGTTTCTATTACCTCTAATTTGTATCGCCGTGGACTGTTAAGGGAACTCTCCGGGACCTCTCTAAAGCTCCAAATCAGGGTGGACAAACTGCAACCTTCAATAGAAATGAGAATGCTGTGCAGAATGGAGATTCTGAGTCGAACCCAAAAGGTGTTTAGAATTGTGACAGATGTTTATGATTGCTGTTCCGGAATTTAG

Protein sequence

MGMHHQNKVSSKTQYVFVSITSNLYRRGLLRELSGTSLKLQIRVDKLQPSIEMRMLCRMEILSRTQKVFRIVTDVYDCCSGI
Homology
[Close]
BLAST of Cla97C09G163715 vs. NCBI nr
Match: TYK03986.1 (GATA transcription factor 24-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 57.0 bits (136), Expect = 8.9e-05
Identity = 36/55 (65.45%), Postives = 41/55 (74.55%), Query Frame = 0 

Query: 23  NLYRRGLLRELSGTSLKLQIRVDKLQPSIEMRMLCRMEILSRTQKVFRIVTDVYD 78
           NL+ +  +REL GTS KLQIRVDKLQPSIEM    RMEI S T+KVFRIV   Y+
Sbjct: 337 NLFLKA-VRELFGTSQKLQIRVDKLQPSIEM----RMEIPSPTRKVFRIVRYGYE 386

[Close]
BLAST of Cla97C09G163715 vs. NCBI nr
Match: KAG7025946.1 (GATA transcription factor 28, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 55.1 bits (131), Expect = 3.4e-04
Identity = 31/50 (62.00%), Postives = 33/50 (66.00%), Query Frame = 0 

Query: 30  LRELSGTSLKLQIRVDKLQPSIEMRMLCRMEILSRTQKVFRIVTDVYDCC 80
           +REL GTS K Q RVDKLQ S  MRMLCRMEILS  QKV R    +   C
Sbjct: 368 VRELCGTSQKHQTRVDKLQASTGMRMLCRMEILSPIQKVHRNCDRIVSSC 417

[Close]
BLAST of Cla97C09G163715 vs. ExPASy TrEMBL
Match: A0A5D3C0L3 (GATA transcription factor 24-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001840 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.3e-05
Identity = 36/55 (65.45%), Postives = 41/55 (74.55%), Query Frame = 0 

Query: 23  NLYRRGLLRELSGTSLKLQIRVDKLQPSIEMRMLCRMEILSRTQKVFRIVTDVYD 78
           NL+ +  +REL GTS KLQIRVDKLQPSIEM    RMEI S T+KVFRIV   Y+
Sbjct: 337 NLFLKA-VRELFGTSQKLQIRVDKLQPSIEM----RMEIPSPTRKVFRIVRYGYE 386

The following BLAST results are available for this feature:
BLAST of Cla97C09G163715 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK03986.18.9e-0565.45GATA transcription factor 24-like isoform X1 [Cucumis melo var. makuwa][more]
KAG7025946.13.4e-0462.00GATA transcription factor 28, partial [Cucurbita argyrosperma subsp. argyrosperm... [more]
BLAST of Cla97C09G163715 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cla97C09G163715 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3C0L34.3e-0565.45GATA transcription factor 24-like isoform X1 OS=Cucumis melo var. makuwa OX=1194... [more]
BLAST of Cla97C09G163715 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C09G163715.1Cla97C09G163715.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding