Cla97C08G160660 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C08G160660
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	Homeobox domain-containing protein
Location	Cla97Chr08: 27418485 .. 27418796 (-)
RNA-Seq Expression	Cla97C08G160660
Synteny	Cla97C08G160660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGCTGAGAAGACCTGGCAGGAACAGGAGTTTCAACAGAGAGAATCCAGATATTTTGATTATGATGATTGCAGTGGATCAGATAATAAGAGGTTGTGAGCAGGACAAAGGAGATGGCACAGAGAGGAAGGGCATGGGCCCTTTAAAGCCTGCAACAAAGAGTAAGTGGTTTCTGCACCCAAGAGCAATGGTCTCTCTCTCTCCACCCCCTGGTTTTCTCTTGTGCGGCTATTTCTTCCTTCTATCTTTATTTAGTGGGTCCATTTCCTCCATCTCCACCTTCATGCAAAGTCCTCCTTTTGCCTCTTGA

mRNA sequence

ATGGTGCTGAGAAGACCTGGCAGGAACAGGAGTTTCAACAGAGAGAATCCAGATATTTTGATTATGATGATTGCAGTGGATCAGATAATAAGAGGTTGTGAGCAGGACAAAGGAGATGGCACAGAGAGGAAGGGCATGGGCCCTTTAAAGCCTGCAACAAAGAGTAAGTGGTTTCTGCACCCAAGAGCAATGGTCTCTCTCTCTCCACCCCCTGGTTTTCTCTTGTGCGGCTATTTCTTCCTTCTATCTTTATTTAGTGGGTCCATTTCCTCCATCTCCACCTTCATGCAAAGTCCTCCTTTTGCCTCTTGA

Coding sequence (CDS)

ATGGTGCTGAGAAGACCTGGCAGGAACAGGAGTTTCAACAGAGAGAATCCAGATATTTTGATTATGATGATTGCAGTGGATCAGATAATAAGAGGTTGTGAGCAGGACAAAGGAGATGGCACAGAGAGGAAGGGCATGGGCCCTTTAAAGCCTGCAACAAAGAGTAAGTGGTTTCTGCACCCAAGAGCAATGGTCTCTCTCTCTCCACCCCCTGGTTTTCTCTTGTGCGGCTATTTCTTCCTTCTATCTTTATTTAGTGGGTCCATTTCCTCCATCTCCACCTTCATGCAAAGTCCTCCTTTTGCCTCTTGA

Protein sequence

MVLRRPGRNRSFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATKSKWFLHPRAMVSLSPPPGFLLCGYFFLLSLFSGSISSISTFMQSPPFAS

Homology

[Close]

BLAST of Cla97C08G160660 vs. NCBI nr
Match: KAA0060995.1 (hypothetical protein E6C27_scaffold501G001300 [Cucumis melo var. makuwa])

HSP 1 Score: 150.2 bits (378), Expect = 9.7e-33
Identity = 71/82 (86.59%), Postives = 75/82 (91.46%), Query Frame = 0


Query: 1  MVLRRPGRNRSFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATKSKWFLH 60
          MVLRRPGRNRSFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATKS+WFLH
Sbjct: 1  MVLRRPGRNRSFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATKSEWFLH 60

Query: 61 PRA-----MVSLSPPPGFLLCG 78
          P++      +S SPPPGFLLCG
Sbjct: 61 PKSYGLSPSLSCSPPPGFLLCG 82

[Close]

BLAST of Cla97C08G160660 vs. NCBI nr
Match: KAG7029268.1 (hypothetical protein SDJN02_07606, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 115.9 bits (289), Expect = 2.0e-22
Identity = 58/69 (84.06%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 1  MVLRRPGRNRSFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATKSKWFLH 60
          MVLRR GRNRSFNRENPDILIMMIAVDQIIRG EQDKGDGTERKGMGPLKP TKS+W L 
Sbjct: 1  MVLRRLGRNRSFNRENPDILIMMIAVDQIIRGHEQDKGDGTERKGMGPLKPVTKSEW-LC 60

Query: 61 PRAMVSLSP 70
           +  +SLSP
Sbjct: 61 TQGQISLSP 68

[Close]

BLAST of Cla97C08G160660 vs. NCBI nr
Match: KGN62652.2 (hypothetical protein Csa_018750 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 7.7e-22
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MVLRRPGRNRSFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATK 55
          MVLRRPGRNR+FNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATK
Sbjct: 1  MVLRRPGRNRNFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATK 54

[Close]

BLAST of Cla97C08G160660 vs. NCBI nr
Match: KAF3447517.1 (hypothetical protein FNV43_RR12703 [Rhamnella rubrinervis])

HSP 1 Score: 81.3 bits (199), Expect = 5.5e-12
Identity = 39/64 (60.94%), Postives = 46/64 (71.88%), Query Frame = 0


Query: 1  MVLRRPGRNRSFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATKSKWFLH 60
          MVLR P  NRS NRENPDILI+MIA +QI+RG E+DKGD  E+ G GP K   ++KW   
Sbjct: 1  MVLRGPASNRSLNRENPDILIVMIAEEQIMRGGEEDKGDQREKGGDGPSKACNRNKWHCA 60

Query: 61 PRAM 65
           RAM
Sbjct: 61 KRAM 64

[Close]

BLAST of Cla97C08G160660 vs. NCBI nr
Match: KAF3975862.1 (hypothetical protein CMV_000902 [Castanea mollissima])

HSP 1 Score: 80.9 bits (198), Expect = 7.2e-12
Identity = 38/54 (70.37%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 1  MVLRRPGRNRSFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATK 55
          MVLRRPG NRS NRENPDILIMM A  QI+RG  +DKG+  E++GMGPLKP T+
Sbjct: 1  MVLRRPGMNRSLNRENPDILIMMNAEQQIMRGGGEDKGEKREKEGMGPLKPVTQ 54

[Close]

BLAST of Cla97C08G160660 vs. ExPASy TrEMBL
Match: A0A5A7V591 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G001300 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.7e-33
Identity = 71/82 (86.59%), Postives = 75/82 (91.46%), Query Frame = 0


Query: 1  MVLRRPGRNRSFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATKSKWFLH 60
          MVLRRPGRNRSFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATKS+WFLH
Sbjct: 1  MVLRRPGRNRSFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATKSEWFLH 60

Query: 61 PRA-----MVSLSPPPGFLLCG 78
          P++      +S SPPPGFLLCG
Sbjct: 61 PKSYGLSPSLSCSPPPGFLLCG 82

[Close]

BLAST of Cla97C08G160660 vs. ExPASy TrEMBL
Match: A0A0A0LN23 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351750 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 3.7e-22
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MVLRRPGRNRSFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATK 55
          MVLRRPGRNR+FNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATK
Sbjct: 1  MVLRRPGRNRNFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATK 54

[Close]

BLAST of Cla97C08G160660 vs. ExPASy TrEMBL
Match: A0A0R0JC99 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_06G051700 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 3.3e-10
Identity = 46/85 (54.12%), Postives = 50/85 (58.82%), Query Frame = 0


Query: 1  MVLRRPGRNRSFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATKSKWFLH 60
          M LR P  NRS NRENPDIL MMIA  QIIRG E DK D  ERK MGP+KPAT+      
Sbjct: 1  MFLRVPAMNRSLNRENPDILNMMIAGKQIIRGVEDDKRDQRERK-MGPVKPATQMS---- 60

Query: 61 PRAMVSLSPPPGFLLCGYFFLLSLF 86
            A    + PP  L C + F L  F
Sbjct: 61 --ATAPNTLPPPLLSCLFVFTLLTF 78

[Close]

BLAST of Cla97C08G160660 vs. ExPASy TrEMBL
Match: A0A6A5PA14 (Homeobox domain-containing protein OS=Lupinus albus OX=3870 GN=Lal_00001993 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.8e-09
Identity = 38/55 (69.09%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 1  MVLRRPGRNRSFNRENPDILIMMIAVDQIIRGCEQDKGDGTER-KGMGPLKPATK 55
          M LR    NRS NRENPDILIMMIA  QIIRG E+DK D  ER K MGP+KPAT+
Sbjct: 1  MFLRHSAMNRSLNRENPDILIMMIAGKQIIRGGEEDKRDQREREKKMGPVKPATE 55

[Close]

BLAST of Cla97C08G160660 vs. ExPASy TrEMBL
Match: A0A6A4PQS0 (Putative transcription factor Homeodomain-TALE-BEL family OS=Lupinus albus OX=3870 GN=Lalb_Chr11g0063111 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.8e-09
Identity = 38/55 (69.09%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 1  MVLRRPGRNRSFNRENPDILIMMIAVDQIIRGCEQDKGDGTER-KGMGPLKPATK 55
          M LR    NRS NRENPDILIMMIA  QIIRG E+DK D  ER K MGP+KPAT+
Sbjct: 1  MFLRHSAMNRSLNRENPDILIMMIAGKQIIRGGEEDKRDQREREKKMGPVKPATE 55

The following BLAST results are available for this feature:

BLAST of Cla97C08G160660 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060995.1	9.7e-33	86.59	hypothetical protein E6C27_scaffold501G001300 [Cucumis melo var. makuwa]	[more]
KAG7029268.1	2.0e-22	84.06	hypothetical protein SDJN02_07606, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KGN62652.2	7.7e-22	98.15	hypothetical protein Csa_018750 [Cucumis sativus]	[more]
KAF3447517.1	5.5e-12	60.94	hypothetical protein FNV43_RR12703 [Rhamnella rubrinervis]	[more]
KAF3975862.1	7.2e-12	70.37	hypothetical protein CMV_000902 [Castanea mollissima]	[more]

BLAST of Cla97C08G160660 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cla97C08G160660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V591	4.7e-33	86.59	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0LN23	3.7e-22	98.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351750 PE=4 SV=1	[more]
A0A0R0JC99	3.3e-10	54.12	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_06G051700 PE=4 SV=1	[more]
A0A6A5PA14	2.8e-09	69.09	Homeobox domain-containing protein OS=Lupinus albus OX=3870 GN=Lal_00001993 PE=3...	[more]
A0A6A4PQS0	2.8e-09	69.09	Putative transcription factor Homeodomain-TALE-BEL family OS=Lupinus albus OX=38...	[more]

BLAST of Cla97C08G160660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C08G160660.1	Cla97C08G160660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009451	RNA modification
cellular_component	GO:0043231	intracellular membrane-bounded organelle
cellular_component	GO:0016020	membrane
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0008270	zinc ion binding