Cla97C08G154110 (gene) Watermelon (97103) v2.5

Overview
NameCla97C08G154110
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Descriptionhigh mobility group B protein 6-like
LocationCla97Chr08: 22226594 .. 22233188 (-)
RNA-Seq ExpressionCla97C08G154110
SyntenyCla97C08G154110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCTTCAGAAACATGAGGCTTTGCTGTTACTAAAGAAGAAAGAGAAGACTGAAACTATTATAAAAAAAACAAAGGAAGAGCGCCAGAGTCAATTTTGCATATGCAAAACCGACACGTCGGTCGGTTAGGGTCAGTGAGCCAAATAAGGGCTCAAGCTGACAAAAACGACTAACCTTTGTTAAAAAAAGAAAAAAGCAATACAATACAAAGTTGTAGAAGGTTAACGCTTGTTCTGTTGTGCACATTGGGAAGACCAAAGGTCGATTATACAATAATAAAAATAATAATGGGGCCAACTAACAAGGTGGGGGCAAGGGCAAAGGCGGAGAATGCATTCCCTATTTAGTTCACGAAGATAAAAAGCCTTTTCAATTACAACTTCAACATCTCGTACAAAACCTTAAATAACTTAGAATCACTTGTCGATAAGTAAACCTTAGTTTTCATTATGAAGCTAGGGAGTCATGTCATCACAGATATTGGAGAAGTGGTTTAGGGACTGTTTGTGGCTATGAGTTGGTTATTATAGTTTGTGAATTGTAATAGTCTATAGATTATAATAGCCTATATTTGGCATGTAGACTATTTTAGTTTGGGTTATAATAGTCTATGTTTGGGGTGCAAACCATTATAGTCTGAGTTACCAAATGACAAGAGAGGATGATTACAAAATGTTTAACGCTGGAGATAAGAAAGTTTATCAAATAGTTTTATTGTAGCTAAGTGTGAGTTATAATAATTGGAAACTTCAACTATTATAAGAGAAGACCCAAACATTGAGTGGGCTATAATAGCCCGCTCCACCCAAGCAAGTTGGGGCCCAAACACTAGGGTTAATAACGGGGTCGGGGCAGGGCAGGTGGGGGTTCCCCGTCCCCACCATTTGTAGGCGAGGACAGGGGCGAGGATTCCCCGAGATAGAGCGAAAGCGAGCCAGCAAGAGAGGGTGAGAGCGAGATTGTGAGAGAGAGCGAGAGGTTGTTTGCCTTTGGGTTTGGTTGGGACTTGGTTTGGGCGAGAGAGAGCGAGAGTGTGAGAGAGAGCAAGATAGACAAAGTGATTGTAAGGGAGGAAAGGATGCTAGAGCAAGAGTGAGAGCTGGAGCGCGAGAGTCAACCATAACATCTTTTATATATATAAAATTAATTTTTATATTAAACGGGTTGGTGTCAAGGTTTTGGGATTGAGGTCGGAGCTGGGACACCCTCCCCGTCCCCGGACGGGTACCTGAAAAAGGTCCCCGATTTGACCCCTATCCTAGGTCAAACCGGTGATACTCCGACCTTGCGGGTTTTTTTGCCAACTGTACCAAACACCCCCATATTTCTTATTGGTTTTAAATGGTTATAGGCTTGTTTGTTGGTATATATTTTCGTTTCTTGATTCACGTTTTTTTTTTTATTTCTTATTTTTGGGCAATAGGTTTTTATTGAAAAAAGAAATGATAATTTGTTTGATAACTGTTTTTTGTTCCCTTAGATGTTATATTAAATATTAAATAGCTATTTATAGATTAAAACAAAAAATCCTTTTATTTATGTTTTTCAAATTCAAAAAGAGGAAACAAGAAACTACATGGTCGTCTAGTTATATTTTTGTTTCTCCCAATCATTTCTTATTTCTAATTCTTTTTAGAATTTTGTATGTTTGGTGACTAATTATTATTTCTTTTCCTTTTTAGTTTAACAATATGTGAGTAGGAATTCTAACCTCTAATATTTTGGTTACGGTAAATTGAGGTAAATGTTAGGAGAGTGATCATCGGACGGTCAATGTCGATTTAGCTTGAATTGATGCTCAGACCTAGTTTTTTGTGACATGATGTCGCTGACCGGTTAGTATAGTTAATTTTGTATGAATAATATTTTCTTAATAAAAATAAAATGAAAAGGAAAAGGAAAATGTAGTCAACCACTAGAGATGTCCATGGGGCTGGGGCGGGCATGGCTTCCCTATCCTTGTCCCCGCTCCCCATTTCACTTCCCATCCTCGCGAAATTCCTCATTTAATTTGCAGGGATCGGGGGAAGATTGCCCATGGGTAATTTGAGGGTAGGGAATTTTTTCTCTTTTTTTTTTTTTTTAAATAAAAAAACTAACTTAAATAACTATTATTGAAAAGTTTAAAATTAAGTTAAATTTCTCACTAATTTTTTTTATATGATTAATTTCTTGTAGACAATTTGAATTTAAAGAGAAATTACTCAATTTTTTAGTTGAAGGAAATAGTTACCTATCAAATTATTCTTATATATAATCTAAATTTAAATGTTCAATTTCACCATATCCATTATCTTAGCTATTAAACAATTCAAACTTGAAATTTAAAGATAATATTTATATAATAATAATATAACATAACAATAATTATTATAATAAATAAAAAAAAGTTAAACAGGGCAAGGCGTGGAATACATTCCCCATCCCCATCCCTGTTTAGCTATTAGAATTTTTTTCGGTCGCTCCCGCTCCCATTATTCCTGCTTAGACGGGGAATCCTCATTCCGTTAGAGGTAGGTTCCCACGGGGAAAATGAACATTTTTGGCTTTCTTTGAACACCCTTAGTATATGCCTTCCTTAACAAGTCAAGTTGGCATAATCAATTATTGTGTCTTTTTTTTAATTTTCTTTTATATATGTGAGTGTTCGTACCAGCTTACACAAAACAATTATTGTTTCTCATTTCTTAGTTTTAATAATCATTTTCAAAATTGTATGCAAATTTTGGTTTTTGTTTGTTCTAGTTTTTTTTAAAAACATAAGTAAAAGTATTACTATCAACATAAGTAAAAGTATTACTATCAAGTATTACTCTATCATTTTTTACTTATAAAATGCATAATAAATACTAAAAATTTATATTCAACATTATTACTCGATTGGTTTCTTTTTAAAGAAATATTTGTTATAAACCATCATGAGTTGGCTTAGTGATAAATAGGGGGCATGACCTTGATAAAAGGCTAAAAGGTTAGGTTTAATCCATGGTGGCCACCTACCTAAGATTTAATATCTTATGAGTTTTTTTGATATCCAAATGTTGTAGGGTTAGGCGAGTTGTCTCGTGAGATTAGTTGAGGTGTGCGTAAGCTGGCTCGGACACTCACAAATAGCAAAAGAAATAATAATAATAACAATAATAATAATAAAATAAAGAAATATTTGTTATAGAAAACTTTGATTTTTTAATTTAAAATTTGAGAGAACAAGGAACAAAAAGGGGTTTAAGAAACATCTTTATGTTTCTATTTTCTTTCTCTTTTTTCTTCCTTGAAAAATAATAAACAATTATTAAATGACTTTTCTCATTTTTCTTTCTTTAAAACTAGGGATAAAGAGGTTATACCTTGATGAAAATTTGAGTTATGCAGGGAAAAGGTTCTGGATCTATATAGAGGTTATATACTAATTGGTTGTATTGTTTCTATAAAAGATGGATATGTTATTACTAAGAGGTTCTAGGTACAAGATGGATGCTTCTTACAATTCCTCTTCTTCTTTCCTTTTTCACCCATGGCCGTTCTTTTTAGTTGAATGGACCGGATAAAAGTATATGATGTGATTTATATACCACTACCGAGGACAAATGTTCTAATTGGAAGCTCATATTAGGAAACTTTCAAAAAGAATTCAGGACCTCAGGTTTGCATATTAATCTTTAAGTTCTTTATAGCTCATAACCATCTCGAATGGAATTCCGAGAGGGTTGTTGTACTAGCTCATAAATAAGAAAAGCATCTTCAATTATCTTGGCATATCCCTTTTGATGGACATCCTACTTTGAATTTTGGGAATGTGTTATAGATTGAGTATTTGCCTAATGAACTAAATGGAAGAAGACTTGGATTTCCAAGGTGAGAGAGGATGACCCAATTAGTGTTTGTCAAAACATCCCCTTCTGTTATTTGTCTCTATTCAAAATTATAGCTGGATGAAGTAAGAAGATGGATAAGATTTCTTATTATGACTATTTTGATAACCATGAATGTTTTGGCTAGCATACATTTGCCTTGTTTTGTTCTGCATGCCTGCATGGTAATGTTTGACTCTATAATGGCATCTCAAAACTTATGATATTGTTTGAACTCTTGACCTTCAAAAGCATCTTGGCTTTCAGCTGGACCTCATCCATGGTTATTAGCATTGAGAAGATAATAAGAGACTTCTGTATGGGATGGGGCTAATTTTGGTTACGAAGGCCACTGTTTATTAATAAGAAATGAGCTTCTTTTTCCCTCAAGAGTTTGGGGGATTTACTACTAGCAAATGGATTTAGATGCCCGTGCTACAAAGGGAAACTCTTTAGAGAGATGTTATGAACGCATTTGCAGATAATATCTATGGTGTTCATTGATATCCGAGAAATGATAACTGGGCCCGTTACCAAGTAGTCGGCTACCTCGCTATGCATAAAGAATTAGTTAATGTTAATTGCTCAATTTGATGGATTAATCCTTTTTGTCGCAAGCACTGGCTTACAAAAATGAGTGTTTATGAGACTTGAGTTCTGCTTCCTCTAGGAGACATAATTCCAATCCATTGCATTGATGCGATGGCTTGTTTTTGCACGTACTGTGCGAAGAATGTAAACTTTATTGATATAACTCTATTTTGCATAAACATCTCTTTAATATTATTTAGACACCACTTTTTCTACATTATAAGAATACCTCTACGCATCAAGACACTCGTGATAACTTTTTCCTTCTATCTAGTAGCATTTTAACGAGTTGATTTATTAGTGAATAGGTCGAAAGCACTTCCATAACAGTTATGACAAGCGAAAATCTAGTCACCTAGGATATTATGAACCCATTCACAATTGGGTAAGTTTTTCAGGATACATCGTAATTTATAATGTGGAGGAACGAAGCTGTTCAAGACTCTCTCGTGACAACAGGACCGGTTACTACTAAACCCTATTGTGGAGGAATGAAACTGTTCAAGATTCTCAAGATTTCTGGTGATAAAGGCTTTTTGTGATTATTCGATAGGTCTTATTTTACGTGATGAGAGATTGAGAGTCTCTCTCTTTCGTTGTTGGGCTCTCTTTTATAGGCTTGGTCTGTTCTTTTTACCCTTGTACTCTTTTCATTTTTTTTTCTCAGTTCATTATATATATACACACAAAAAGAGAAAGAAAAGACCAAAAGAAGAAAAAAGAAGAAAAAAAAAAAAAATTCTCTCGTGACAACAGAAATTGATTGTGTTGGCATTCTTCATGATTACCATCCATTCTAAAAGTCCAATTTTAGTCTATACTTCCACCCCCCACGACCTTACTAATGATAACTAAATTGCATTGCAGGATCATAGTTCTTTAGGAGCTTGGGCAGACAGGGGCAGAGATGTAGACTAAGCTGAAGTGTATAGATTTTTTAGACAATTGGTTAATGATTAACCTGGGTGATGAAGGAGAACGATTCAAATCTTTTGCTAGACAGAATCGGTTGGAAACTTTTGCTTTCTCGCTGGAGAGAGACGAGGTTTATTGCACGAGTTGGTGTCGATACTCAAATATCTTTAGTCATGGCTCTTCTTTATACACCTTGCTGCTTATTGGAGTTATTAAGATTACAATTTTGCCACTCAAGTAAGAAAAATACTGTGAATAGTTTGTATCTCATCACAGTCATTTTTAGTTGGACTATCCCTTGGCTCAAACCACTCAAGTGCTAGAGCGAAATTCAACGGTGTAATTGTAACAAGATTTGTACTCGAAATATTACTTTTAGTTGCTTGAATTGATTTCATTGGAAACTAATTTACTTTGCTGCTATTATCCGTTGATTCTGCTGATGATATAATTCTTGAAATGTAGCTGAATCATGAGCCTTCACATCAAAGGTTTCATGTTCTCTCTGCTTGTGTCATAAAAGTTTATTAATAATTTCATATCAATCTTGCCAAGGAGTTGCTCAAGTCTAGATGTTTTCAATTGATAAATTCAAAGAAAATAATTAACTGTAGGTTTGAATTCTTATTTATTTCAATGGTAATGCTCAAAGAAAAGATTATGAACTTGATTTCATGAAAGTGCATGCTTTATTGTTTTCTAATCTTATGGAAGGCTTTTATTATTACCTATTCTTGTGGTGTTCAAGACAGGATATTTACAAGATTTATAGTATGGAGGAAAAGGTTAATATAAATGTGTGTGCGGAGGAGCTTTCAAATTTTGTACTATTCAAGGTTTAAAATGTCAATTTTGATGGGAATGTTGATATGAATTGATATTTCAAGAAAAGTTATAAAAAAAAAAACAGTATTTAAATTAGTAAACAAATATTCTACATTCTTTTAAATAATATATTATATTTACATTAGTAACATTTTGTTGTTGATTTTTACTTTGTGCTTTCTAGATTTTTGGTATGATATAATAGGAATATCGATTAATGTGAAAATATTGATGAAAATGTTTACATGTCAATGAAAATTATGAAGATGTTTTTTTTTTTTGTTTTTCTTTTTTTACATTTAGAATTTTTTTAGTTGTTTTGGATTTGCCGCAATAGAAAATATCCCAAGTCAAAGCACATGAGTAGTACATATTTGGACACTTGGGAAACCTTCCATCACTATTTTTAA

mRNA sequence

ATGAAGCTTCAGAAACATGAGGCTTTGCTGTTACTAAAGAAGAAAGAGAAGACTGAAACTATTATAAAAAAAACAAAGGAAGAGCGCCAGAGTCAATTTTGCATATGCAAAACCGACACGTCGGTCGGTCGAAAGCACTTCCATAACAGTTATGACAAGCGAAAATCTAGTCACCTAGGATATTATGAACCCATTCACAATTGGGTAAGTTTTTCAGGATACATCGTAATTTATAATGTGGAGGAACGAAGCTGTTCAAGACTCTCTCGTGACAACAGGACCGACAATTGGTTAATGATTAACCTGGGTGATGAAGGAGAACGATTCAAATCTTTTGCTAGACAGAATCGGTTGGAAACTTTTGCTTTCTCGCTGGAGAGAGACGAGTTGGACTATCCCTTGGCTCAAACCACTCAAGTGCTAGAGCGAAATTCAACGGATATTTACAAGATTTATAGTATGGAGGAAAAGGTTAATATAAATGTGTGTGCGGAGGAGCTTTCAAATTTTGTACTATTCAAGTTGTTTTGGATTTGCCGCAATAGAAAATATCCCAAGTCAAAGCACATGAGTAGTACATATTTGGACACTTGGGAAACCTTCCATCACTATTTTTAA

Coding sequence (CDS)

ATGAAGCTTCAGAAACATGAGGCTTTGCTGTTACTAAAGAAGAAAGAGAAGACTGAAACTATTATAAAAAAAACAAAGGAAGAGCGCCAGAGTCAATTTTGCATATGCAAAACCGACACGTCGGTCGGTCGAAAGCACTTCCATAACAGTTATGACAAGCGAAAATCTAGTCACCTAGGATATTATGAACCCATTCACAATTGGGTAAGTTTTTCAGGATACATCGTAATTTATAATGTGGAGGAACGAAGCTGTTCAAGACTCTCTCGTGACAACAGGACCGACAATTGGTTAATGATTAACCTGGGTGATGAAGGAGAACGATTCAAATCTTTTGCTAGACAGAATCGGTTGGAAACTTTTGCTTTCTCGCTGGAGAGAGACGAGTTGGACTATCCCTTGGCTCAAACCACTCAAGTGCTAGAGCGAAATTCAACGGATATTTACAAGATTTATAGTATGGAGGAAAAGGTTAATATAAATGTGTGTGCGGAGGAGCTTTCAAATTTTGTACTATTCAAGTTGTTTTGGATTTGCCGCAATAGAAAATATCCCAAGTCAAAGCACATGAGTAGTACATATTTGGACACTTGGGAAACCTTCCATCACTATTTTTAA

Protein sequence

MKLQKHEALLLLKKKEKTETIIKKTKEERQSQFCICKTDTSVGRKHFHNSYDKRKSSHLGYYEPIHNWVSFSGYIVIYNVEERSCSRLSRDNRTDNWLMINLGDEGERFKSFARQNRLETFAFSLERDELDYPLAQTTQVLERNSTDIYKIYSMEEKVNINVCAEELSNFVLFKLFWICRNRKYPKSKHMSSTYLDTWETFHHYF
Homology
[Close]
BLAST of Cla97C08G154110 vs. NCBI nr
Match: XP_022980459.1 (high mobility group B protein 6-like [Cucurbita maxima])

HSP 1 Score: 55.1 bits (131), Expect = 8.4e-04
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 1   MKLQKHEALLLLKKKEKTETIIKKTKEERQSQ 33
           MKLQKHEALLLLKKKEKTETIIKKTKEERQ +
Sbjct: 365 MKLQKHEALLLLKKKEKTETIIKKTKEERQKK 396

[Close]
BLAST of Cla97C08G154110 vs. NCBI nr
Match: KAG7031168.1 (High mobility group B protein 13, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 55.1 bits (131), Expect = 8.4e-04
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 1   MKLQKHEALLLLKKKEKTETIIKKTKEERQSQ 33
           MKLQKHEALLLLKKKEKTETIIKKTKEERQ +
Sbjct: 365 MKLQKHEALLLLKKKEKTETIIKKTKEERQKK 396

[Close]
BLAST of Cla97C08G154110 vs. NCBI nr
Match: XP_022942886.1 (high mobility group B protein 6-like [Cucurbita moschata])

HSP 1 Score: 55.1 bits (131), Expect = 8.4e-04
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 1   MKLQKHEALLLLKKKEKTETIIKKTKEERQSQ 33
           MKLQKHEALLLLKKKEKTETIIKKTKEERQ +
Sbjct: 365 MKLQKHEALLLLKKKEKTETIIKKTKEERQKK 396

[Close]
BLAST of Cla97C08G154110 vs. NCBI nr
Match: KAG6600529.1 (High mobility group B protein 13, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 55.1 bits (131), Expect = 8.4e-04
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 1   MKLQKHEALLLLKKKEKTETIIKKTKEERQSQ 33
           MKLQKHEALLLLKKKEKTETIIKKTKEERQ +
Sbjct: 365 MKLQKHEALLLLKKKEKTETIIKKTKEERQKK 396

[Close]
BLAST of Cla97C08G154110 vs. ExPASy TrEMBL
Match: A0A6J1IZC2 (high mobility group B protein 6-like OS=Cucurbita maxima OX=3661 GN=LOC111479826 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.1e-04
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 1   MKLQKHEALLLLKKKEKTETIIKKTKEERQSQ 33
           MKLQKHEALLLLKKKEKTETIIKKTKEERQ +
Sbjct: 365 MKLQKHEALLLLKKKEKTETIIKKTKEERQKK 396

[Close]
BLAST of Cla97C08G154110 vs. ExPASy TrEMBL
Match: A0A6J1FQ69 (high mobility group B protein 6-like OS=Cucurbita moschata OX=3662 GN=LOC111447782 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.1e-04
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 1   MKLQKHEALLLLKKKEKTETIIKKTKEERQSQ 33
           MKLQKHEALLLLKKKEKTETIIKKTKEERQ +
Sbjct: 365 MKLQKHEALLLLKKKEKTETIIKKTKEERQKK 396

The following BLAST results are available for this feature:
BLAST of Cla97C08G154110 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022980459.18.4e-0493.75high mobility group B protein 6-like [Cucurbita maxima][more]
KAG7031168.18.4e-0493.75High mobility group B protein 13, partial [Cucurbita argyrosperma subsp. argyros... [more]
XP_022942886.18.4e-0493.75high mobility group B protein 6-like [Cucurbita moschata][more]
KAG6600529.18.4e-0493.75High mobility group B protein 13, partial [Cucurbita argyrosperma subsp. sororia... [more]
BLAST of Cla97C08G154110 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cla97C08G154110 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IZC24.1e-0493.75high mobility group B protein 6-like OS=Cucurbita maxima OX=3661 GN=LOC111479826... [more]
A0A6J1FQ694.1e-0493.75high mobility group B protein 6-like OS=Cucurbita moschata OX=3662 GN=LOC1114477... [more]
BLAST of Cla97C08G154110 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C08G154110.1Cla97C08G154110.1mRNA