Cla97C08G150885 (gene) Watermelon (97103) v2.5

Overview
NameCla97C08G150885
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
DescriptionUnknown protein
LocationCla97Chr08: 19300805 .. 19303251 (+)
RNA-Seq ExpressionCla97C08G150885
SyntenyCla97C08G150885
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATTTTTGGTGCTAGCTACCCTACCCCATGAAACATATTTGCCAAGGTAGAAAACAAATAGATATTTAAAAACATGTAAGGTTATCCAATGGACCATGATACAATATCATATTGATTTGTCCAAAATATCTTGGATGGGTGTTTTCAAATGTCAATATCAATTAGGGCTTTGTTTTATTGTTTATATTCTTGGAAACAATTAATGACAGGCAATGATGAGAATGTTTTAAAAGTTTCCTTTCAATGACAGTATGGCACCACTTGAGTGTTCTCATTAAGCACAAATTCAAATATCCAATTGAGTTTTAAACCTGAAACAATGGGACACCACTTCAATATTCTCACCCCAAAATTAAAATATCCAATTGGGTTAGAAATAAAGACCAACCTGTTTACCAATTTATAATAAAAAATAGTGTAATCGTAATGAAATTTCATTAATAGATCAATCGTAATAGTGTAATCGTAATGAAATTTCATTAATAGATCAATTGTAATAGATCACAATCGCAAATGTATATCACGAATTATGAATCTGTCACATTTACTCTTACCGTTATTGTTATTATTATGTTTTAGGATCAAACAGTAATGGTAATGGTAAATTATTCCTAAGGAAATAAATATTAATAAAATATTTAATTTTATAAGTGACTATGGTAGTGCCTATTTTTCAATTCAAGATTTTTTTTTTTTTTTTTTTTTTTGTCTACATAAATGTTATTATCACCCACTAAACTAAAAGGAGGCGTTTTGAGCACTGAATTAGTTATTATAATCTATGAGTTATATTACTATTTTAGTCTACATAATATCTAATACTTGTATGGACTTGTGCACAATTGCGCAGCCTCAACAATCACAAACTGCAAGTTAGAGCCAATGTTGTTAATGGTGTGGGTTATGATTTGTCAGAGTTGAGCTACTTGGTGGAGGAGATTGTCTCCTTATCTTTGGTCGCTCAGGTGGTCTCCTTCATGTGGTGCTCGAGAGAGGCGAATGGGGTGGCACATCATCTCGCTCGTCTAGTGGTGTCTTTTGGTAATTTTGGCTTTTGTTTTGTAAATATAGCTTCTTCCTTCTCCAAAGAAGTTGTTACAGACTCTTTTGAACTTCCTGTTTGGTTTCCTCTACTATTTTTTAGAAGGCAGGTATATGAGACTCGATTCTAGTTTGGTTTTATAGATCTTAAAAAAAATAAAAATAAAAAAATCACAAACTGATGTTCCCAAGATAAGGACTTGGTATGGACTTATGCTTCCAAACCAAAGAAAACTATTAACTTAAAGCCTTTGTCTCATAGAGCTTATACATAGTGTGGGCGTTTGTATCACAATGGTAACACTTGGTGGGGAGGTTTGTGCGAGAGCACCAAAGTTAGAGATATATCAGGATTGTTGATTGGAAAATAATTAGGGCATAAGGGTAATTAACTAGGTGCATCTTGGTTATAAATAGAGTGTGTTAGGGACCTTCGAGGAGAGAAGATTTTAGAAATAATTTCCATTGTGGGAATTTTGGGAGAGTGTAACTTTCTCGAAAAGCTATGTTATGTTGTAACTTCTTTAGATATTACAATATACATTTCTATCTTTTCGTGTCCCTCGTGTTCTTTATTGTTCTTATTAGGTGGTAATCTAATAGTTTACTGATCAATGGTCGCTAACACTTGCATGTCAAACACGGATCACTTAAGATGCAATCATGTCAACACTAATCCACAGAATCTCGTCAAGACTCTACAACTAAGCACACTAAACTGGATAATCACTTGGAAATTCCTCATGTTGCACTCTTTTTCATATTTTAGTTTCCCTATTTTTTTCGCAACTTGCAAACAACCCCACTAGTATATGCTCATGCACATCGCATTTCTTTTCCTCAGGCATGGGTGCATGGGTCCCACTGACAATTCCAAGCACTTGTGCCTAACCTAAAATGGGTTTAAGCCTCCCAACTGAAACAGCCTCCTATACATTGGAAAATAGACTACTATATATATATATATATAGAAAATGAAGCAATTTACTACAGAATGTTAGGAATTCATGAACTTCTGATGACATTTAAGCAAACACTTGTTTTGAGCTTTTGCTATGAACTAATCCTGAAAAGCCAAACCAAATGAGTGTGGGATTCAAAATATCCAACAGTTTATTTTATGTATAAAAAGTTGAAGATAAACTGATGTCCAGGCAGAACAAGCTCAAACTACAGGACAAATAACAACAATATTACACACTTACAGTATGATACAAGGTCAAACCTCCTTCTAAGGCCAATTTCCTTCCAGCAAGTTTGCAGAAACCAAGAGAATGTAAAATGGTCTTCCAAAGTACATGAGTATCGTTGCAAAAGAAAAACAGCTCTCCTGGAACCTGAAGAATGTATCACATATCTATATACTTATAACTACATAGCTATCTATACATATCTGGCCTAA

mRNA sequence

ATGACATTTTTGGTGCTAGCTACCCTACCCCATGAAACATATTTGCCAAGCCTCAACAATCACAAACTGCAAGTTAGAGCCAATGTTGTTAATGGTGTGGGTTATGATTTGTCAGAGTTGAGCTACTTGGTGGAGGAGATTGTCTCCTTATCTTTGGTCGCTCAGGTGGTCTCCTTCATGTGGTGCTCGAGAGAGGCGAATGGGGTGGCACATCATCTCGCTCGTCTAGTGGTGTCTTTTGCTTCTTCCTTCTCCAAAGAAGTTGTTACAGACTCTTTTGAACTTCCTGTTTGGTTTCCTCTACTATTTTTTAGAAGGCAGTATGATACAAGGTCAAACCTCCTTCTAAGGCCAATTTCCTTCCAGCAAGTTTGCAGAAACCAAGAGAATGTAAAATGGTCTTCCAAAGTACATGAGTATCGTTGCAAAAGAAAAACAGCTCTCCTGGAACCTGAAGAATGTATCACATATCTATATACTTATAACTACATAGCTATCTATACATATCTGGCCTAA

Coding sequence (CDS)

ATGACATTTTTGGTGCTAGCTACCCTACCCCATGAAACATATTTGCCAAGCCTCAACAATCACAAACTGCAAGTTAGAGCCAATGTTGTTAATGGTGTGGGTTATGATTTGTCAGAGTTGAGCTACTTGGTGGAGGAGATTGTCTCCTTATCTTTGGTCGCTCAGGTGGTCTCCTTCATGTGGTGCTCGAGAGAGGCGAATGGGGTGGCACATCATCTCGCTCGTCTAGTGGTGTCTTTTGCTTCTTCCTTCTCCAAAGAAGTTGTTACAGACTCTTTTGAACTTCCTGTTTGGTTTCCTCTACTATTTTTTAGAAGGCAGTATGATACAAGGTCAAACCTCCTTCTAAGGCCAATTTCCTTCCAGCAAGTTTGCAGAAACCAAGAGAATGTAAAATGGTCTTCCAAAGTACATGAGTATCGTTGCAAAAGAAAAACAGCTCTCCTGGAACCTGAAGAATGTATCACATATCTATATACTTATAACTACATAGCTATCTATACATATCTGGCCTAA

Protein sequence

MTFLVLATLPHETYLPSLNNHKLQVRANVVNGVGYDLSELSYLVEEIVSLSLVAQVVSFMWCSREANGVAHHLARLVVSFASSFSKEVVTDSFELPVWFPLLFFRRQYDTRSNLLLRPISFQQVCRNQENVKWSSKVHEYRCKRKTALLEPEECITYLYTYNYIAIYTYLA
Homology
The following BLAST results are available for this feature:
BLAST of Cla97C08G150885 vs.
Match NameE-valueIdentityDescription
BLAST of Cla97C08G150885 vs.
Match NameE-valueIdentityDescription
BLAST of Cla97C08G150885 vs.
Match NameE-valueIdentityDescription
BLAST of Cla97C08G150885 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 29..76
e-value: 3.0E-5
score: 23.8

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C08G150885.1Cla97C08G150885.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity