Cla97C08G150570 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C08G150570
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	glycine-rich RNA-binding protein RZ1C-like
Location	Cla97Chr08: 19012067 .. 19012839 (+)
RNA-Seq Expression	Cla97C08G150570
Synteny	Cla97C08G150570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGCAGAGCCAGGTTTCAGCGGAGGAGGCTATTCATCTGGTAGTAGGGCTAGTTTTGGGAGATGAGGAGATAGATCTGTGGGGCAAGATGAATGCTTCAAGTGTAGACGCCCAGGGCATTGGGCACAAGACTGTCCTTCATTCGGTGGTGGACGTGGTAGGGGCAAAGCTTCATTTTCATCACGTTCTCGATTTGATAGTGATGGCCGTGGGGACCGTTTTGGAGGAGACCGTGACCGATATATTGATGACCGTTATAATGGAGGGCGATATGGTGATAGAGATTGTTTTGATCGTAGAGATGACAAGTATGGAAGTCGAAACCGCTATTTTGACGACAGGTAGGTATACATCTTTTATTTGTTCTAATAACAATTACAATTGTGATGTGATAACAGAAGGGCGAGTAGCTTCTTTCTACTTGTGTTAACACCCATTTCCACATGTCGTATTCGTACATGTCTTTCGAAGTATGATTTGCTTGACAGGTTATTGAAGTAAGTTTGGGCAATTTTATGCAAACTCTGCAGGTACCCATCTTTTGGAGATCGCTTTGTCCGTGGTGATAGGTATGATGTTAGTGATCGTTATCCTCAAAATGGCTATGTCAAAGACATGGCTACGATAGGGATATTGGTCTTAGGAGTGGCAGTGATAGGTATGGGTAGCGGAGGTCCTAGCCATCATGAGGGAAGAAGTTATAGAGACAGAACAGGTCCTTATGACCGTCCAAGCAGGGGAGGGCGACCGTCTTCTTACGACCGTTACTAA

mRNA sequence

ATGATGCAGAGCCAGGTTTCAGCGGAGGAGGCTATTCATCTGGTAGTAGGGCTAGTTTTGGGAGATGAGGAGATAGATCTGTGGGGCAAGATGAATGCTTCAAGTGTAGACGCCCAGGGCATTGGGCACAAGACTGTCCTTCATTCGGTGGTGGACGTGGTAGGGGCAAAGCTTCATTTTCATCACGTTCTCGATTTGATAGTGATGGCCGTGGGGACCGTTTTGGAGGAGACCGTGACCGATATATTGATGACCGTTATAATGGAGGGCGATATGGTGATAGAGATTGTTTTGATCGTAGAGATGACAAGTATGGAAGTCGAAACCGCTATTTTGACGACAGGTAGGTACCCATCTTTTGGAGATCGCTTTGTCCGTGGTGATAGGTATGATGTTAGTGATCGTTATCCTCAAAATGGCTATGTCAAAGACATGGCTACGATAGGGATATTGGTCTTAGGAGTGGCAGTGATAGGTATGGGTAGCGGAGGTCCTAGCCATCATGAGGGAAGAAGTTATAGAGACAGAACAGGTCCTTATGACCGTCCAAGCAGGGGAGGGCGACCGTCTTCTTACGACCGTTACTAA

Coding sequence (CDS)

ATGATGCAGAGCCAGGTTTCAGCGGAGGAGGCTATTCATCTGGTAGTAGGGCTAGTTTTGGGAGATGAGGAGATAGATCTGTGGGGCAAGATGAATGCTTCAAGTGTAGACGCCCAGGGCATTGGGCACAAGACTGTCCTTCATTCGGTGGTGGACGTGGTAGGGGCAAAGCTTCATTTTCATCACGTTCTCGATTTGATAGTGATGGCCGTGGGGACCGTTTTGGAGGAGACCGTGACCGATATATTGATGACCGTTATAATGGAGGGCGATATGGTGATAGAGATTGTTTTGATCGTAGAGATGACAAGTATGGAAGTCGAAACCGCTATTTTGACGACAGGTAGGTACCCATCTTTTGGAGATCGCTTTGTCCGTGGTGATAGGTATGATGTTAGTGATCGTTATCCTCAAAATGGCTATGTCAAAGACATGGCTACGATAGGGATATTGGTCTTAGGAGTGGCAGTGATAGGTATGGGTAGCGGAGGTCCTAGCCATCATGAGGGAAGAAGTTATAGAGACAGAACAGGTCCTTATGACCGTCCAAGCAGGGGAGGGCGACCGTCTTCTTACGACCGTTACTAA

Protein sequence

MMQSQVSAEEAIHLVVGLVLGDEEIDLWGKMNASSVDAQGIGHKTVLHSVVDVVGAKLHFHHVLDLIVMAVGTVLEETVTDILMTVIMEGDMVIEIVLIVEMTSMEVETAILTTGRYPSFGDRFVRGDRYDVSDRYPQNGYVKDMATIGILVLGVAVIGMGSGGPSHHEGRSYRDRTGPYDRPSRGGRPSSYDRY

Homology

[Close]

BLAST of Cla97C08G150570 vs. NCBI nr
Match: KAG7032971.1 (hypothetical protein SDJN02_07022 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 172.9 bits (437), Expect = 2.6e-39
Identity = 108/164 (65.85%), Postives = 122/164 (74.39%), Query Frame = 0


Query: 1   MMQSQVSAEEAIHLVVGLVLGDEEIDLWGKMNASSVDAQGIGHKTVLHSVVDVVGAKLHF 60
           M++SQVS EEAIHLVVGLVLG+EEIDLWGKMNASSVDAQGIGH+TVL   VDVVG ++HF
Sbjct: 1   MIESQVSGEEAIHLVVGLVLGEEEIDLWGKMNASSVDAQGIGHETVLQPEVDVVGVEVHF 60

Query: 61  HHVLDLIVMAVGTVLEETVTDILMTVIMEGDM----VIEIVLIVEMTSMEVETAILTTGR 120
           H VLDL+V+ VG VLEE VT + MTV+MEG+M    VIEIVL V MTSMEVETAILTTG 
Sbjct: 61  HRVLDLMVIVVGIVLEEIVTGMSMTVMMEGEMGGATVIEIVLTVGMTSMEVETAILTTGT 120

Query: 121 YPSFGDRFVRGDRYDVSDRYPQNGYVKDMATIGILVLGVAVIGM 161
           +       V      V D         ++ATIGILV GVAVIGM
Sbjct: 121 HLLEIVLQVVIGMMLVIDILKMATSKTEVATIGILVPGVAVIGM 164

[Close]

BLAST of Cla97C08G150570 vs. NCBI nr
Match: XP_038885256.1 (glycine-rich RNA-binding protein RZ1C isoform X2 [Benincasa hispida])

HSP 1 Score: 120.2 bits (300), Expect = 2.0e-23
Identity = 59/80 (73.75%), Postives = 60/80 (75.00%), Query Frame = 0


Query: 116 RYPSFGDRFVRGDRYDVSDRYPQNGYVKDMATIGILVLGVAVIGMGSGGPSHHEGRSYRD 175
           RYPS GDRF  GDRYDVSDRYPQNGYVKD      +         GSGGP  HEGRSYRD
Sbjct: 165 RYPSAGDRFAGGDRYDVSDRYPQNGYVKDRGYDRDIGPRSGSDRYGSGGPGRHEGRSYRD 224

Query: 176 RTGPYDRPSRGGRPSSYDRY 196
           RTGPYDRPSRGGRPSSYDRY
Sbjct: 225 RTGPYDRPSRGGRPSSYDRY 244

[Close]

BLAST of Cla97C08G150570 vs. NCBI nr
Match: XP_038885252.1 (glycine-rich RNA-binding protein RZ1C isoform X1 [Benincasa hispida] >XP_038885253.1 glycine-rich RNA-binding protein RZ1C isoform X1 [Benincasa hispida] >XP_038885254.1 glycine-rich RNA-binding protein RZ1C isoform X1 [Benincasa hispida] >XP_038885255.1 glycine-rich RNA-binding protein RZ1C isoform X1 [Benincasa hispida])

HSP 1 Score: 120.2 bits (300), Expect = 2.0e-23
Identity = 59/80 (73.75%), Postives = 60/80 (75.00%), Query Frame = 0


Query: 116 RYPSFGDRFVRGDRYDVSDRYPQNGYVKDMATIGILVLGVAVIGMGSGGPSHHEGRSYRD 175
           RYPS GDRF  GDRYDVSDRYPQNGYVKD      +         GSGGP  HEGRSYRD
Sbjct: 203 RYPSAGDRFAGGDRYDVSDRYPQNGYVKDRGYDRDIGPRSGSDRYGSGGPGRHEGRSYRD 262

Query: 176 RTGPYDRPSRGGRPSSYDRY 196
           RTGPYDRPSRGGRPSSYDRY
Sbjct: 263 RTGPYDRPSRGGRPSSYDRY 282

[Close]

BLAST of Cla97C08G150570 vs. NCBI nr
Match: XP_031737122.1 (glycine-rich RNA-binding protein RZ1C isoform X2 [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-21
Identity = 57/80 (71.25%), Postives = 58/80 (72.50%), Query Frame = 0


Query: 116 RYPSFGDRFVRGDRYDVSDRYPQNGYVKDMATIGILVLGVAVIGMGSGGPSHHEGRSYRD 175
           RYPS GDRF   DRYDVSDRYPQNGYVKD      +         GSGGP  HEGRSYRD
Sbjct: 176 RYPSAGDRFTGSDRYDVSDRYPQNGYVKDRVYDRDIGPRSGSDRYGSGGPGRHEGRSYRD 235

Query: 176 RTGPYDRPSRGGRPSSYDRY 196
           RTGPYDRPSR GRPSSYDRY
Sbjct: 236 RTGPYDRPSRVGRPSSYDRY 255

[Close]

BLAST of Cla97C08G150570 vs. NCBI nr
Match: XP_004150370.1 (glycine-rich RNA-binding protein RZ1C isoform X1 [Cucumis sativus] >KGN62191.1 hypothetical protein Csa_006832 [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-21
Identity = 57/80 (71.25%), Postives = 58/80 (72.50%), Query Frame = 0


Query: 116 RYPSFGDRFVRGDRYDVSDRYPQNGYVKDMATIGILVLGVAVIGMGSGGPSHHEGRSYRD 175
           RYPS GDRF   DRYDVSDRYPQNGYVKD      +         GSGGP  HEGRSYRD
Sbjct: 204 RYPSAGDRFTGSDRYDVSDRYPQNGYVKDRVYDRDIGPRSGSDRYGSGGPGRHEGRSYRD 263

Query: 176 RTGPYDRPSRGGRPSSYDRY 196
           RTGPYDRPSR GRPSSYDRY
Sbjct: 264 RTGPYDRPSRVGRPSSYDRY 283

[Close]

BLAST of Cla97C08G150570 vs. ExPASy Swiss-Prot
Match: O22703 (Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana OX=3702 GN=RZ1B PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.6e-07
Identity = 37/82 (45.12%), Postives = 46/82 (56.10%), Query Frame = 0


Query: 116 RYPSFGDRFVRGDRYDVSDRYPQNGY-VKDMATIGILVLGVAVIGMGSGGPSHHEGRSYR 175
           RY   GDRFV  DRY + + + +N Y  ++ +              G  GP   EGR YR
Sbjct: 212 RYAPPGDRFV-SDRYGMPEHHLENEYRGRERSYDRDRYARDTSDRYGDMGPIRDEGRPYR 271

Query: 176 DRTGPYDRPSR-GGRPSSYDRY 196
            R GPYDRPSR GGRPSSY+R+
Sbjct: 272 SRPGPYDRPSRPGGRPSSYERW 292

[Close]

BLAST of Cla97C08G150570 vs. ExPASy TrEMBL
Match: A0A0A0LQB5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G324460 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 5.4e-22
Identity = 57/80 (71.25%), Postives = 58/80 (72.50%), Query Frame = 0


Query: 116 RYPSFGDRFVRGDRYDVSDRYPQNGYVKDMATIGILVLGVAVIGMGSGGPSHHEGRSYRD 175
           RYPS GDRF   DRYDVSDRYPQNGYVKD      +         GSGGP  HEGRSYRD
Sbjct: 204 RYPSAGDRFTGSDRYDVSDRYPQNGYVKDRVYDRDIGPRSGSDRYGSGGPGRHEGRSYRD 263

Query: 176 RTGPYDRPSRGGRPSSYDRY 196
           RTGPYDRPSR GRPSSYDRY
Sbjct: 264 RTGPYDRPSRVGRPSSYDRY 283

[Close]

BLAST of Cla97C08G150570 vs. ExPASy TrEMBL
Match: A0A6J1BW89 (glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111006270 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 4.6e-21
Identity = 58/87 (66.67%), Postives = 60/87 (68.97%), Query Frame = 0


Query: 116 RYPSFGDRFVRGDRYDVSDRYPQNGYVKDMATIGILVLGVAVIG-------MGSGGPSHH 175
           RYPS GDRF  GDRYDVSDRYPQNGYVKD             IG        GSGGP  +
Sbjct: 204 RYPSGGDRFAGGDRYDVSDRYPQNGYVKDRGGYN------RDIGPRSGSDRYGSGGPGRY 263

Query: 176 EGRSYRDRTGPYDRPSRGGRPSSYDRY 196
           EGRSYRDR GPYDRPSRGGRPSSY+RY
Sbjct: 264 EGRSYRDRAGPYDRPSRGGRPSSYERY 284

[Close]

BLAST of Cla97C08G150570 vs. ExPASy TrEMBL
Match: A0A6J1BW59 (glycine-rich RNA-binding protein RZ1C-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111006270 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 4.6e-21
Identity = 58/87 (66.67%), Postives = 60/87 (68.97%), Query Frame = 0


Query: 116 RYPSFGDRFVRGDRYDVSDRYPQNGYVKDMATIGILVLGVAVIG-------MGSGGPSHH 175
           RYPS GDRF  GDRYDVSDRYPQNGYVKD             IG        GSGGP  +
Sbjct: 166 RYPSGGDRFAGGDRYDVSDRYPQNGYVKDRGGYN------RDIGPRSGSDRYGSGGPGRY 225

Query: 176 EGRSYRDRTGPYDRPSRGGRPSSYDRY 196
           EGRSYRDR GPYDRPSRGGRPSSY+RY
Sbjct: 226 EGRSYRDRAGPYDRPSRGGRPSSYERY 246

[Close]

BLAST of Cla97C08G150570 vs. ExPASy TrEMBL
Match: A0A6J1HB93 (glycine-rich RNA-binding protein RZ1C-like OS=Cucurbita moschata OX=3662 GN=LOC111462429 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.3e-20
Identity = 57/83 (68.67%), Postives = 60/83 (72.29%), Query Frame = 0


Query: 116 RYPSFGDRFVRGDRYDVSDRYPQNGYVKDMATIGILV---LGVAVIGMGSGGPSHHEGRS 175
           RYPS GDRF  GDRYDVSDRYPQNGYVKD       +    G    G G GGP  +EGRS
Sbjct: 208 RYPSAGDRFTGGDRYDVSDRYPQNGYVKDRGGYDRDIGPRSGSDRYGTG-GGPGRYEGRS 267

Query: 176 YRDRTGPYDRPSRGGRPSSYDRY 196
           YRDR GPYDRPSRGGRPSSY+RY
Sbjct: 268 YRDRPGPYDRPSRGGRPSSYERY 289

[Close]

BLAST of Cla97C08G150570 vs. ExPASy TrEMBL
Match: A0A6J1JS04 (glycine-rich RNA-binding protein RZ1C OS=Cucurbita maxima OX=3661 GN=LOC111487287 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.0e-20
Identity = 56/83 (67.47%), Postives = 60/83 (72.29%), Query Frame = 0


Query: 116 RYPSFGDRFVRGDRYDVSDRYPQNGYVKDMATIGILV---LGVAVIGMGSGGPSHHEGRS 175
           RYPS GDRF  GDRYDVSDRYPQNGYVKD       +    G    G G GGP  +EGR+
Sbjct: 208 RYPSAGDRFAGGDRYDVSDRYPQNGYVKDRGGYDRDIGPRSGSDRYGTG-GGPGRYEGRN 267

Query: 176 YRDRTGPYDRPSRGGRPSSYDRY 196
           YRDR GPYDRPSRGGRPSSY+RY
Sbjct: 268 YRDRPGPYDRPSRGGRPSSYERY 289

[Close]

BLAST of Cla97C08G150570 vs. TAIR 10
Match: AT1G60650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 56.6 bits (135), Expect = 2.6e-08
Identity = 37/82 (45.12%), Postives = 46/82 (56.10%), Query Frame = 0


Query: 116 RYPSFGDRFVRGDRYDVSDRYPQNGY-VKDMATIGILVLGVAVIGMGSGGPSHHEGRSYR 175
           RY   GDRFV  DRY + + + +N Y  ++ +              G  GP   EGR YR
Sbjct: 212 RYAPPGDRFV-SDRYGMPEHHLENEYRGRERSYDRDRYARDTSDRYGDMGPIRDEGRPYR 271

Query: 176 DRTGPYDRPSR-GGRPSSYDRY 196
            R GPYDRPSR GGRPSSY+R+
Sbjct: 272 SRPGPYDRPSRPGGRPSSYERW 292

[Close]

BLAST of Cla97C08G150570 vs. TAIR 10
Match: AT1G60650.2 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 56.6 bits (135), Expect = 2.6e-08
Identity = 37/82 (45.12%), Postives = 46/82 (56.10%), Query Frame = 0


Query: 116 RYPSFGDRFVRGDRYDVSDRYPQNGY-VKDMATIGILVLGVAVIGMGSGGPSHHEGRSYR 175
           RY   GDRFV  DRY + + + +N Y  ++ +              G  GP   EGR YR
Sbjct: 212 RYAPPGDRFV-SDRYGMPEHHLENEYRGRERSYDRDRYARDTSDRYGDMGPIRDEGRPYR 271

Query: 176 DRTGPYDRPSR-GGRPSSYDRY 196
            R GPYDRPSR GGRPSSY+R+
Sbjct: 272 SRPGPYDRPSRPGGRPSSYERW 292

The following BLAST results are available for this feature:

BLAST of Cla97C08G150570 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7032971.1	2.6e-39	65.85	hypothetical protein SDJN02_07022 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_038885256.1	2.0e-23	73.75	glycine-rich RNA-binding protein RZ1C isoform X2 [Benincasa hispida]	[more]
XP_038885252.1	2.0e-23	73.75	glycine-rich RNA-binding protein RZ1C isoform X1 [Benincasa hispida] >XP_0388852...	[more]
XP_031737122.1	1.1e-21	71.25	glycine-rich RNA-binding protein RZ1C isoform X2 [Cucumis sativus]	[more]
XP_004150370.1	1.1e-21	71.25	glycine-rich RNA-binding protein RZ1C isoform X1 [Cucumis sativus] >KGN62191.1 h...	[more]

BLAST of Cla97C08G150570 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22703	3.6e-07	45.12	Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana OX=3702 GN=RZ1B PE...	[more]

BLAST of Cla97C08G150570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQB5	5.4e-22	71.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G324460 PE=4 SV=1	[more]
A0A6J1BW89	4.6e-21	66.67	glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Momordica charantia OX=...	[more]
A0A6J1BW59	4.6e-21	66.67	glycine-rich RNA-binding protein RZ1C-like isoform X2 OS=Momordica charantia OX=...	[more]
A0A6J1HB93	1.3e-20	68.67	glycine-rich RNA-binding protein RZ1C-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1JS04	3.0e-20	67.47	glycine-rich RNA-binding protein RZ1C OS=Cucurbita maxima OX=3661 GN=LOC11148728...	[more]

BLAST of Cla97C08G150570 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G60650.1	2.6e-08	45.12	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT1G60650.2	2.6e-08	45.12	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 163..195
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..195

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C08G150570.1	Cla97C08G150570.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding